BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139854.7 + phase: 0 /pseudo
(672 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC224081 49 7e-06
BI786825 39 0.006
TC208963 39 0.007
TC218819 similar to UP|O03160 (O03160) NADH dehydrogenase subuni... 34 0.24
TC210472 similar to UP|Q9FHZ1 (Q9FHZ1) SCARECROW gene regulator-... 32 0.70
BI942951 GP|14599161|em urease {Glycine max}, partial (10%) 32 0.91
TC226825 similar to UP|Q9ZW85 (Q9ZW85) 3-isopropylmalate dehydra... 31 1.6
TC204823 similar to UP|Q8SMH8 (Q8SMH8) RNA-binding protein, part... 30 4.5
BM525744 29 5.9
TC225579 similar to UP|Q84KS7 (Q84KS7) AP2/ERF-domain protein, p... 29 5.9
TC225668 similar to UP|Q9FVE9 (Q9FVE9) Cytosolic aconitase, part... 29 7.7
TC207981 similar to UP|PTI6_LYCES (O04682) Pathogenesis-related ... 29 7.7
AI941414 weakly similar to PIR|T01729|T01 mitochondrial solute c... 29 7.7
>TC224081
Length = 512
Score = 48.9 bits (115), Expect = 7e-06
Identities = 30/74 (40%), Positives = 41/74 (54%)
Frame = +1
Query: 574 ELKAIVERLKKLPFQMKLEVKEGLRQLAFPETTLMSPPPRKVPTKGAKKKFDIARSKGKI 633
E + I++R ++L KL +K L ++A+P M PPP KV TKGA KK + K
Sbjct: 106 EKETILKRFEQLDVCGKLHLKSKL*EIAYPNMNSMCPPPEKVKTKGASKKPLTKQQK--- 276
Query: 634 TSTSRIPSSGEVVD 647
ST R PS + VD
Sbjct: 277 -STKRYPSYWKYVD 315
>BI786825
Length = 421
Score = 39.3 bits (90), Expect = 0.006
Identities = 30/77 (38%), Positives = 40/77 (50%), Gaps = 4/77 (5%)
Frame = +1
Query: 593 VKEGLRQLAFPETTLMSPPPRKVPTKGAKKKFDIARSKGKITSTSRIPSSGEVVDS---- 648
+K LR++A+P+ M PP KV TKGA KK ST R PS + VD+
Sbjct: 1 LKSKLREIAYPDQNSMCHPPAKVNTKGAPKK----SMNRNPRSTKRDPSYWKYVDAFHSV 168
Query: 649 QNPDSQWSPSPTTSSYK 665
QN +S S +SSY+
Sbjct: 169 QNSNSSVRHS-VSSSYQ 216
>TC208963
Length = 1163
Score = 38.9 bits (89), Expect = 0.007
Identities = 18/47 (38%), Positives = 30/47 (63%)
Frame = +1
Query: 574 ELKAIVERLKKLPFQMKLEVKEGLRQLAFPETTLMSPPPRKVPTKGA 620
E+ A+ +R ++L + K+ + L ++AFP+T L PP +V TKGA
Sbjct: 943 EVDALYKRFQELDYAGKIILMAKLHEMAFPDTALKCLPPEEVGTKGA 1083
>TC218819 similar to UP|O03160 (O03160) NADH dehydrogenase subunit 2, partial
(5%)
Length = 732
Score = 33.9 bits (76), Expect = 0.24
Identities = 15/39 (38%), Positives = 25/39 (63%)
Frame = +1
Query: 574 ELKAIVERLKKLPFQMKLEVKEGLRQLAFPETTLMSPPP 612
E+ A+ + ++L + K+ +K LR+LAFP+ LM P P
Sbjct: 220 EVDALHNQFQELDYAGKITLKAKLRELAFPDAILMCPSP 336
>TC210472 similar to UP|Q9FHZ1 (Q9FHZ1) SCARECROW gene regulator-like
protein, partial (44%)
Length = 751
Score = 32.3 bits (72), Expect = 0.70
Identities = 31/84 (36%), Positives = 41/84 (47%), Gaps = 11/84 (13%)
Frame = +2
Query: 599 QLAFPETTLMSPPPRKVPTKGA-----KKKFDIARSKGKITS-TSRIPS-SGEVVDSQNP 651
+L+ P T PPP +P+ G K + + RSK I S T+ IP S V S N
Sbjct: 38 KLSAPLTPEAIPPPTNLPSSGPTSPARKLRPKLRRSKPSIPSLTAAIPPVSNSSVCSSNA 217
Query: 652 DSQ--W--SPSPTTSSYKRKKGVR 671
S W S SPTTSS + + +R
Sbjct: 218 RSASPWTTSTSPTTSSRRSRNSLR 289
>BI942951 GP|14599161|em urease {Glycine max}, partial (10%)
Length = 415
Score = 32.0 bits (71), Expect = 0.91
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Frame = +1
Query: 244 ILITQEHNLKVILLKIFFGLIQHPLSCLTIFQRFWLWTPR-----TKPTCIGCQCLR 295
+L+ QE LK +LLKIF+ + + L+ + R W+ R ++P CI C R
Sbjct: 142 LLLNQE*ELKQLLLKIFY-MTRGQLALYHLIHRLWVELERSFLNPSQPICIRLNCAR 309
>TC226825 similar to UP|Q9ZW85 (Q9ZW85) 3-isopropylmalate dehydratase, small
subunit, partial (71%)
Length = 1121
Score = 31.2 bits (69), Expect = 1.6
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = +3
Query: 603 PETTLMSPPPRKVPTKGAKKKFDIARSKGKITSTSRIPSSGEVVDSQNPDSQWSPSPTTS 662
P + SPPP + + ARSK S+S +P+S + P S+W+P P
Sbjct: 327 PTPSSASPPPTP------RVSSNPARSKPSTPSSSAVPTSVAAPPASTPPSRWAP-PAPP 485
Query: 663 SYKRKKGVRS 672
+ R + + S
Sbjct: 486 QWSRSRTLGS 515
>TC204823 similar to UP|Q8SMH8 (Q8SMH8) RNA-binding protein, partial (66%)
Length = 1596
Score = 29.6 bits (65), Expect = 4.5
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = -3
Query: 217 NVNKYGRQIGVTRSRCNI*SRSWRSTTILITQEHNLKVILLKIFFGLI 264
N++ GR GVTR R S SWRS ++ +Q+ ++K++ + G++
Sbjct: 718 NID**GRLKGVTRRRAFRPSSSWRS--LINSQQSSIKIVTTEFLHGVL 581
>BM525744
Length = 411
Score = 29.3 bits (64), Expect = 5.9
Identities = 20/69 (28%), Positives = 29/69 (41%)
Frame = +1
Query: 227 VTRSRCNI*SRSWRSTTILITQEHNLKVILLKIFFGLIQHPLSCLTIFQRFWLWTPRTKP 286
V +CN W + + E ++L +I+FG IQ P + + T K
Sbjct: 136 VLGQKCNTY*SYWNMINMCVGVERWTILMLSEIYFGHIQMPSNF*VLSTLSCSLTILIKS 315
Query: 287 TCIGCQCLR 295
T I C CLR
Sbjct: 316 TGINCHCLR 342
>TC225579 similar to UP|Q84KS7 (Q84KS7) AP2/ERF-domain protein, partial (31%)
Length = 1156
Score = 29.3 bits (64), Expect = 5.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 486 WVIWVLVGRKYMTCCCFSSPL 506
W WVL G +MTC C+++ L
Sbjct: 720 WTTWVLSGTTWMTCGCWTTSL 782
>TC225668 similar to UP|Q9FVE9 (Q9FVE9) Cytosolic aconitase, partial (29%)
Length = 783
Score = 28.9 bits (63), Expect = 7.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -1
Query: 494 RKYMTCCCFSSPLYKHHLVTVFPCWNI 520
R +++CCC V +FPCWN+
Sbjct: 750 RSHVSCCCIIH-------VEIFPCWNV 691
>TC207981 similar to UP|PTI6_LYCES (O04682) Pathogenesis-related genes
transcriptional activator PTI6, partial (25%)
Length = 925
Score = 28.9 bits (63), Expect = 7.7
Identities = 11/32 (34%), Positives = 18/32 (55%)
Frame = -1
Query: 473 RPMLC*RNTWTIVWVIWVLVGRKYMTCCCFSS 504
+ +LC R + ++WVI + + CCC SS
Sbjct: 106 KELLCDRGSCMLIWVISLFTLLVFCCCCCCSS 11
>AI941414 weakly similar to PIR|T01729|T01 mitochondrial solute carrier
protein homolog - Arabidopsis thaliana, partial (28%)
Length = 304
Score = 28.9 bits (63), Expect = 7.7
Identities = 21/58 (36%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Frame = +1
Query: 498 TCCCFSSPLYKHHLVTVFPCWNIDSKMSPCTRG*VVMCLDMLWTTLLWKRH-VVGKHC 554
T CC S Y P N D +M PC C W LWKRH G HC
Sbjct: 25 TNCCLPS*RY--------PSKNADGRMEPC-------CFCSNW---LWKRHSSTGLHC 144
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.351 0.154 0.553
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,343,259
Number of Sequences: 63676
Number of extensions: 569901
Number of successful extensions: 6349
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 4724
Number of HSP's successfully gapped in prelim test: 238
Number of HSP's that attempted gapping in prelim test: 1507
Number of HSP's gapped (non-prelim): 5143
length of query: 672
length of database: 12,639,632
effective HSP length: 104
effective length of query: 568
effective length of database: 6,017,328
effective search space: 3417842304
effective search space used: 3417842304
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (22.0 bits)
S2: 62 (28.5 bits)
Medicago: description of AC139854.7