TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139854.1 - phase: 0 /pseudo
         (406 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC207626                                                               31  0.88

>TC207626 
          Length = 1824

 Score = 31.2 bits (69), Expect = 0.88
 Identities = 13/28 (46%), Positives = 18/28 (63%)
 Frame = +3

Query: 262 LMHFREKLHSARADIHRSPQ*AASLASR 289
           + HFR  +HS  ++ HR PQ AA+ A R
Sbjct: 120 IFHFRHHVHSFHSERHRHPQNAATFADR 203


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.369    0.170    0.610 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,502,383
Number of Sequences: 63676
Number of extensions: 213442
Number of successful extensions: 2744
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1524
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 1209
Number of HSP's gapped (non-prelim): 1642
length of query: 406
length of database: 12,639,632
effective HSP length: 99
effective length of query: 307
effective length of database: 6,335,708
effective search space: 1945062356
effective search space used: 1945062356
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 60 (27.7 bits)