BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139841.7 - phase: 0
(46 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC220753 36 0.005
TC220322 29 0.61
TC210254 similar to GB|AAM26637.1|20855902|AY101516 AT3g06940/F1... 27 3.0
TC206016 similar to UP|Q6T1C8 (Q6T1C8) Peroxidase precursor, par... 27 3.0
TC226961 27 3.0
TC226962 weakly similar to UP|Q9Y616 (Q9Y616) IL-1 receptor-asso... 27 3.0
TC226831 similar to PIR|T52285|T52285 serine/threonine-specific ... 26 3.9
TC232022 homologue to UP|Q9LU46 (Q9LU46) DEAD-box protein abstra... 26 3.9
TC206968 similar to UP|Q9LDF0 (Q9LDF0) ESTs AU086027(S2303), par... 26 3.9
TC215912 similar to GB|AAS09986.1|41618940|AY519516 MYB transcri... 25 8.8
TC220476 weakly similar to UP|ACD9_HUMAN (Q9H845) Acyl-CoA dehyd... 25 8.8
>TC220753
Length = 1312
Score = 35.8 bits (81), Expect = 0.005
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 2 RRAKKGRPPITRIRTEMDDVETER--RCGVCRMSDHSRKDC 40
RR GRP TRI EMD+ R +C +C+ H++ +C
Sbjct: 449 RRQISGRPATTRIHNEMDESIPNRLKKCSLCKTEGHNQSNC 571
>TC220322
Length = 1264
Score = 28.9 bits (63), Expect = 0.61
Identities = 16/51 (31%), Positives = 25/51 (48%), Gaps = 9/51 (17%)
Frame = +1
Query: 2 RRAKKGRPPITRIRTEMDDVET---------ERRCGVCRMSDHSRKDCTNI 43
+R ++GRP R R+ +D T E CG C ++H+ + C NI
Sbjct: 655 KRVQRGRPKKNRKRSVDEDNVTGHKLKRKLAEFTCGRCGQTNHNIRSCKNI 807
>TC210254 similar to GB|AAM26637.1|20855902|AY101516 AT3g06940/F17A9_9
{Arabidopsis thaliana;} , partial (6%)
Length = 814
Score = 26.6 bits (57), Expect = 3.0
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +1
Query: 7 GRPPITRIRTEMDDVETERRCGVCRMSDHSRKDC 40
GRP + ++ + +D ++ + +C C+ H+RK C
Sbjct: 322 GRPKMKQVES-IDIIKRQLQCSKCKGLGHNRKTC 420
>TC206016 similar to UP|Q6T1C8 (Q6T1C8) Peroxidase precursor, partial (95%)
Length = 1214
Score = 26.6 bits (57), Expect = 3.0
Identities = 12/28 (42%), Positives = 16/28 (56%)
Frame = -1
Query: 10 PITRIRTEMDDVETERRCGVCRMSDHSR 37
PIT + + + ET RC R SD+SR
Sbjct: 266 PITALNKAVMEEETNNRCPNARFSDNSR 183
>TC226961
Length = 721
Score = 26.6 bits (57), Expect = 3.0
Identities = 10/32 (31%), Positives = 17/32 (52%)
Frame = +1
Query: 6 KGRPPITRIRTEMDDVETERRCGVCRMSDHSR 37
K RPP+T + ++ +E + G S+H R
Sbjct: 184 KARPPMTEVLATLEQIEAPKTAGRNSHSEHHR 279
>TC226962 weakly similar to UP|Q9Y616 (Q9Y616) IL-1
receptor-associated-kinase-M (Interleukin-1
receptor-associated kinase 3), partial (8%)
Length = 1084
Score = 26.6 bits (57), Expect = 3.0
Identities = 10/32 (31%), Positives = 17/32 (52%)
Frame = +1
Query: 6 KGRPPITRIRTEMDDVETERRCGVCRMSDHSR 37
K RPP+T + ++ +E + G S+H R
Sbjct: 541 KARPPMTEVLATLEQIEAPKTAGRNSHSEHHR 636
>TC226831 similar to PIR|T52285|T52285 serine/threonine-specific protein kinase
APK2a [imported] - Arabidopsis thaliana {Arabidopsis
thaliana;} , partial (82%)
Length = 1693
Score = 26.2 bits (56), Expect = 3.9
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +1
Query: 1 MRRAKKGRPPITRIRTEMDDVETERRCG 28
+ R KGRPPIT + ++ + + G
Sbjct: 1264 LNREAKGRPPITEVLQTLEQIAASKTAG 1347
>TC232022 homologue to UP|Q9LU46 (Q9LU46) DEAD-box protein abstrakt, partial
(39%)
Length = 829
Score = 26.2 bits (56), Expect = 3.9
Identities = 13/53 (24%), Positives = 22/53 (40%), Gaps = 7/53 (13%)
Frame = +2
Query: 1 MRRAKKGRPPIT-------RIRTEMDDVETERRCGVCRMSDHSRKDCTNIRHQ 46
++ AK+ PP+ E+ D+ + C C H +DC + HQ
Sbjct: 476 LQEAKQRIPPVLAELNDPMEDNEEITDISGVKGCAYCGGLGHRIRDCPKLEHQ 634
>TC206968 similar to UP|Q9LDF0 (Q9LDF0) ESTs AU086027(S2303), partial (9%)
Length = 1045
Score = 26.2 bits (56), Expect = 3.9
Identities = 15/34 (44%), Positives = 17/34 (49%)
Frame = +2
Query: 1 MRRAKKGRPPITRIRTEMDDVETERRCGVCRMSD 34
M+R K PPI+ DDV E CG R SD
Sbjct: 146 MKRKSKRYPPISASMENDDDVSPEMDCG--RRSD 241
>TC215912 similar to GB|AAS09986.1|41618940|AY519516 MYB transcription factor
{Arabidopsis thaliana;} , partial (34%)
Length = 633
Score = 25.0 bits (53), Expect = 8.8
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +2
Query: 18 MDDVETERRCGVCRMSDHSRKDCTN 42
+D V RRC C + H+ + C N
Sbjct: 203 LDPVPMTRRCSHCSHNGHNSRTCPN 277
>TC220476 weakly similar to UP|ACD9_HUMAN (Q9H845) Acyl-CoA dehydrogenase
family member 9, mitochondrial precursor (ACAD-9) ,
partial (3%)
Length = 885
Score = 25.0 bits (53), Expect = 8.8
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 6 KGRPPITRIRTEMDDVETERRCGVCRMS 33
+GRPP TE ++ +R C CR S
Sbjct: 237 RGRPPTALHLTEDTELSVQRSCC*CRRS 154
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.325 0.135 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,175,833
Number of Sequences: 63676
Number of extensions: 18296
Number of successful extensions: 177
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of query: 46
length of database: 12,639,632
effective HSP length: 22
effective length of query: 24
effective length of database: 11,238,760
effective search space: 269730240
effective search space used: 269730240
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)
Medicago: description of AC139841.7