BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139841.3 + phase: 0
(154 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC203419 homologue to UP|RL2B_FRIAG (O22644) 60S ribosomal prote... 263 3e-71
TC203648 similar to UP|Q9LWB3 (Q9LWB3) Ribosomal protein L23, co... 263 3e-71
TC203334 homologue to UP|RL2B_FRIAG (O22644) 60S ribosomal prote... 262 4e-71
TC205850 homologue to UP|Q9LWB3 (Q9LWB3) Ribosomal protein L23, ... 261 7e-71
TC203710 homologue to UP|RL2B_FRIAG (O22644) 60S ribosomal prote... 260 2e-70
TC205849 similar to UP|RL2B_DAUCA (Q9AT35) 60S ribosomal protein... 256 3e-69
BE555903 similar to GP|13560777|gb ribosome protein L23a {Daucus... 186 3e-48
AW830393 similar to GP|21592339|gb 60S ribosomal protein L23A {A... 185 7e-48
CK605747 160 3e-40
AW423796 similar to GP|13560777|gb| ribosome protein L23a {Daucu... 88 1e-18
BI699528 GP|7340791|emb ribosomal protein L23 {Spinacia oleracea... 84 3e-17
BE475005 similar to PIR|S34285|S34 polyubiquitin - tomato, parti... 32 0.16
AW568901 similar to GP|3603456|gb| polyubiquitin {Capsicum chine... 31 0.21
TC220299 similar to UP|Q84P17 (Q84P17) Acyl-activating enzyme 18... 29 1.0
TC217369 similar to UP|Q42601 (Q42601) Carbamoyl phosphate synth... 28 1.3
BM567994 28 1.7
TC207437 similar to UP|O81922 (O81922) Proline-rich protein, par... 28 2.3
BG509785 27 3.0
TC228931 similar to UP|Q9FXI5 (Q9FXI5) F6F9.8 protein, partial (4%) 27 3.0
TC229419 UP|Q6PIN8 (Q6PIN8) TAO1 protein (Fragment), partial (5%) 27 3.9
>TC203419 homologue to UP|RL2B_FRIAG (O22644) 60S ribosomal protein L23A,
partial (94%)
Length = 779
Score = 263 bits (671), Expect = 3e-71
Identities = 135/150 (90%), Positives = 138/150 (92%), Gaps = 1/150 (0%)
Frame = +2
Query: 6 AGDVSKKTDPKAQALKAAKAVKSGTAIKK-AKKIRTTVTFHRPKTQTKDRNPKYPRISAT 64
A V KK DPKAQALK AKAVKSG KK AKKIRT+VTFHRP+T KDRNPKYPRISA
Sbjct: 47 APKVDKKNDPKAQALKTAKAVKSGATFKKKAKKIRTSVTFHRPRTLKKDRNPKYPRISAP 226
Query: 65 PRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNT 124
PRNKLDHYQILK+PLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNT
Sbjct: 227 PRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNT 406
Query: 125 LIRPDGTKKAYVRLTPDYDALDVANKIGII 154
LIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 407 LIRPDGTKKAYVRLTPDYDALDVANKIGII 496
>TC203648 similar to UP|Q9LWB3 (Q9LWB3) Ribosomal protein L23, complete
Length = 808
Score = 263 bits (671), Expect = 3e-71
Identities = 135/148 (91%), Positives = 137/148 (92%), Gaps = 1/148 (0%)
Frame = +1
Query: 8 DVSKKTDPKAQALKAAKAVKSGTAIKK-AKKIRTTVTFHRPKTQTKDRNPKYPRISATPR 66
D SKK DPKAQALK AKAVKSG KK KKIRT+VTFHRP+T KDRNPKYPRISA PR
Sbjct: 166 DSSKKADPKAQALKTAKAVKSGANFKKKTKKIRTSVTFHRPRTLKKDRNPKYPRISAPPR 345
Query: 67 NKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLI 126
NKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLI
Sbjct: 346 NKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLI 525
Query: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154
RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 526 RPDGTKKAYVRLTPDYDALDVANKIGII 609
>TC203334 homologue to UP|RL2B_FRIAG (O22644) 60S ribosomal protein L23A,
partial (94%)
Length = 733
Score = 262 bits (670), Expect = 4e-71
Identities = 135/150 (90%), Positives = 137/150 (91%), Gaps = 1/150 (0%)
Frame = +3
Query: 6 AGDVSKKTDPKAQALKAAKAVKSGTAIKK-AKKIRTTVTFHRPKTQTKDRNPKYPRISAT 64
A V KK DPKAQALK AKAVKSG KK KKIRT+VTFHRPKT KDRNPKYPRISA
Sbjct: 57 APKVDKKNDPKAQALKTAKAVKSGATFKKKVKKIRTSVTFHRPKTLKKDRNPKYPRISAP 236
Query: 65 PRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNT 124
PRNKLDHYQILK+PLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNT
Sbjct: 237 PRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNT 416
Query: 125 LIRPDGTKKAYVRLTPDYDALDVANKIGII 154
LIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 417 LIRPDGTKKAYVRLTPDYDALDVANKIGII 506
>TC205850 homologue to UP|Q9LWB3 (Q9LWB3) Ribosomal protein L23, partial
(94%)
Length = 679
Score = 261 bits (668), Expect = 7e-71
Identities = 134/149 (89%), Positives = 139/149 (92%), Gaps = 2/149 (1%)
Frame = +1
Query: 8 DVSKKTDPKAQALKAAKAVKSGTAI--KKAKKIRTTVTFHRPKTQTKDRNPKYPRISATP 65
D +KK DPKAQALK AKAVKSG + KKAKKIRT+VTFHRP+T K+RNPKYPRISA P
Sbjct: 76 DNAKKADPKAQALKTAKAVKSGGQVFKKKAKKIRTSVTFHRPRTLKKERNPKYPRISAPP 255
Query: 66 RNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTL 125
RNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTL
Sbjct: 256 RNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTL 435
Query: 126 IRPDGTKKAYVRLTPDYDALDVANKIGII 154
IRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 436 IRPDGTKKAYVRLTPDYDALDVANKIGII 522
>TC203710 homologue to UP|RL2B_FRIAG (O22644) 60S ribosomal protein L23A,
complete
Length = 768
Score = 260 bits (665), Expect = 2e-70
Identities = 133/148 (89%), Positives = 136/148 (91%), Gaps = 1/148 (0%)
Frame = +3
Query: 8 DVSKKTDPKAQALKAAKAVKSGTAIKK-AKKIRTTVTFHRPKTQTKDRNPKYPRISATPR 66
D KK DPKAQALK AKAVKSG +KK KKIRT+VTFHRPKT KDRNPKYPRISA PR
Sbjct: 81 DSLKKADPKAQALKTAKAVKSGATLKKKTKKIRTSVTFHRPKTLKKDRNPKYPRISAPPR 260
Query: 67 NKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLI 126
NKLDHYQILK+PLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQ KKVNTLI
Sbjct: 261 NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQTKKVNTLI 440
Query: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154
RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 441 RPDGTKKAYVRLTPDYDALDVANKIGII 524
>TC205849 similar to UP|RL2B_DAUCA (Q9AT35) 60S ribosomal protein L23a,
partial (97%)
Length = 750
Score = 256 bits (654), Expect = 3e-69
Identities = 131/149 (87%), Positives = 138/149 (91%), Gaps = 2/149 (1%)
Frame = +1
Query: 8 DVSKKTDPKAQALKAAKAVKSGTAI--KKAKKIRTTVTFHRPKTQTKDRNPKYPRISATP 65
D +K+ DPKAQALK AKAVKS + KKAKKIRT+VTFHRP+T K+RNPKYPRISA P
Sbjct: 70 DNAKRADPKAQALKTAKAVKSSGQVFRKKAKKIRTSVTFHRPRTLKKERNPKYPRISAPP 249
Query: 66 RNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTL 125
RNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRA+KKKIKDAVKKMYDIQAKKVNTL
Sbjct: 250 RNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRANKKKIKDAVKKMYDIQAKKVNTL 429
Query: 126 IRPDGTKKAYVRLTPDYDALDVANKIGII 154
IRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 430 IRPDGTKKAYVRLTPDYDALDVANKIGII 516
>BE555903 similar to GP|13560777|gb ribosome protein L23a {Daucus carota},
partial (91%)
Length = 445
Score = 186 bits (473), Expect = 3e-48
Identities = 98/143 (68%), Positives = 115/143 (79%), Gaps = 2/143 (1%)
Frame = +2
Query: 8 DVSKKTDPKAQALKAAKAVKSGTAI--KKAKKIRTTVTFHRPKTQTKDRNPKYPRISATP 65
D +K+ DPKAQALK AKAV+S + KKA IRT+VTF+RP+T K+RNPKYPRISA P
Sbjct: 17 DNAKRADPKAQALKTAKAVRSSGQVFRKKA*TIRTSVTFYRPRTLKKERNPKYPRISAPP 196
Query: 66 RNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTL 125
RNKLDHYQILKFPLTT+SAMKKI+DN TLV I DL A++ +I DAVKKMYDI+A +V +L
Sbjct: 197 RNKLDHYQILKFPLTTDSAMKKIDDNTTLVLIDDLSANETEIVDAVKKMYDIEANRVTSL 376
Query: 126 IRPDGTKKAYVRLTPDYDALDVA 148
I PDGT KAY +T D DA DVA
Sbjct: 377 IMPDGT*KAYC*MTSDDDASDVA 445
>AW830393 similar to GP|21592339|gb 60S ribosomal protein L23A {Arabidopsis
thaliana}, partial (86%)
Length = 457
Score = 185 bits (470), Expect = 7e-48
Identities = 99/143 (69%), Positives = 111/143 (77%), Gaps = 2/143 (1%)
Frame = +2
Query: 12 KTDPKAQALKAAKAVKSGTAI--KKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPRNKL 69
+ DPKA ALK AKAV S + KKAKKI T+ TFH+P T K+RNP YPRISA P NKL
Sbjct: 29 RADPKAHALKTAKAV*SSGQLFTKKAKKIMTSATFHKPWTLKKERNPNYPRISAQPINKL 208
Query: 70 DHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPD 129
DHYQILK+ LTTESAM KIED+NTLVFI DLRA+KK+IKDAVKKMYDI A++VNTLIRPD
Sbjct: 209 DHYQILKYALTTESAMNKIEDDNTLVFIDDLRANKKEIKDAVKKMYDIHAQQVNTLIRPD 388
Query: 130 GTKKAYVRLTPDYDALDVANKIG 152
GTKK Y + D DV KIG
Sbjct: 389 GTKKDYCTMR*QCDDYDVDYKIG 457
>CK605747
Length = 689
Score = 160 bits (404), Expect = 3e-40
Identities = 80/133 (60%), Positives = 99/133 (74%)
Frame = +1
Query: 16 KAQALKAAKAVKSGTAIKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPRNKLDHYQIL 75
K A AAKA G +K K+RT+ TF +PKT + RNPKYPR + +LD ++I+
Sbjct: 115 KTAAKNAAKATLKGVHAQKKLKVRTSTTFRQPKTLSLARNPKYPRKAIHHAPRLDEHKII 294
Query: 76 KFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAY 135
PL TESAMKKIE+NNTLVFIVD++A+K +IKDA+KK+YDI K+NTLIRPDG KKAY
Sbjct: 295 VHPLNTESAMKKIEENNTLVFIVDVKANKAQIKDALKKLYDIDTVKINTLIRPDGQKKAY 474
Query: 136 VRLTPDYDALDVA 148
RLTPD DALD+A
Sbjct: 475 ARLTPDVDALDIA 513
>AW423796 similar to GP|13560777|gb| ribosome protein L23a {Daucus carota},
partial (37%)
Length = 259
Score = 88.2 bits (217), Expect = 1e-18
Identities = 47/82 (57%), Positives = 56/82 (67%), Gaps = 1/82 (1%)
Frame = +2
Query: 8 DVSKKTDPKAQALKAAKAVKSGTAIKK-AKKIRTTVTFHRPKTQTKDRNPKYPRISATPR 66
D SKK DPKAQALK AKAVK G K+ K+IRT+VTF RP+T KDRN +YPRI A P
Sbjct: 14 DSSKKADPKAQALKTAKAVKCGANFKEETKRIRTSVTFRRPRTLKKDRNREYPRIRAPPT 193
Query: 67 NKLDHYQILKFPLTTESAMKKI 88
NKL HY ++ T+ S K+
Sbjct: 194NKL*HYHNVELAFTSGSGGGKV 259
>BI699528 GP|7340791|emb ribosomal protein L23 {Spinacia oleracea}, partial
(25%)
Length = 366
Score = 84.0 bits (206), Expect = 3e-17
Identities = 40/41 (97%), Positives = 41/41 (99%)
Frame = -3
Query: 114 MYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
MYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI+
Sbjct: 310 MYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGIM 188
>BE475005 similar to PIR|S34285|S34 polyubiquitin - tomato, partial (31%)
Length = 529
Score = 31.6 bits (70), Expect = 0.16
Identities = 19/66 (28%), Positives = 32/66 (47%), Gaps = 6/66 (9%)
Frame = +3
Query: 10 SKKTDPKAQALKAAKAVKSGTAIKKAK------KIRTTVTFHRPKTQTKDRNPKYPRISA 63
S+K P + + +S + + AK K T +T PK++TK +P+ IS+
Sbjct: 180 SRKXQPFTLSFISIITYRSSSKLSLAKP*P*KSKALTPLTTSEPKSKTKKESPQTSNISS 359
Query: 64 TPRNKL 69
+P N L
Sbjct: 360 SPENNL 377
>AW568901 similar to GP|3603456|gb| polyubiquitin {Capsicum chinense},
partial (45%)
Length = 364
Score = 31.2 bits (69), Expect = 0.21
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 37 KIRTTVTFHRPKTQTKDRNPKYPRISATPRNKL 69
K T +T RP+++TK +P+ IS++P+N L
Sbjct: 51 KALTPLTTSRPRSRTKKESPQTSNISSSPKNNL 149
>TC220299 similar to UP|Q84P17 (Q84P17) Acyl-activating enzyme 18, partial
(17%)
Length = 759
Score = 28.9 bits (63), Expect = 1.0
Identities = 23/97 (23%), Positives = 42/97 (42%), Gaps = 7/97 (7%)
Frame = -1
Query: 18 QALKAAKAVKSGTAIKKAKKIRTTVTFHRPK-------TQTKDRNPKYPRISATPRNKLD 70
+ L AA + +A+ + + I T + F P+ T R P I + +
Sbjct: 420 ETLIAAVSKMPSSALSQTRSISTELVFIPPRFIVSSARPCTTKRPPTVLLIISPCLLRTC 241
Query: 71 HYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKI 107
Y + + L ++K+ DNN +V++ A KKK+
Sbjct: 240 LYHVRQDKLWINKPVEKVYDNNNRTRVVNISATKKKV 130
>TC217369 similar to UP|Q42601 (Q42601) Carbamoyl phosphate synthetase large
chain (CarB) (At1g29900/F1N18_6) , partial (32%)
Length = 1915
Score = 28.5 bits (62), Expect = 1.3
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -3
Query: 57 KYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIK 108
K+P+ P L I + +S K I+DNNT +F+V+ ++ K+ K
Sbjct: 1505 KHPKAILPPLPNLATCAISR*AAIAQSIYKTIDDNNTYIFLVE-ESNPKRFK 1353
>BM567994
Length = 157
Score = 28.1 bits (61), Expect = 1.7
Identities = 12/22 (54%), Positives = 17/22 (76%)
Frame = +3
Query: 133 KAYVRLTPDYDALDVANKIGII 154
K V++ D +A+D+ANKIGII
Sbjct: 3 KEDVKIPKDVEAVDIANKIGII 68
>TC207437 similar to UP|O81922 (O81922) Proline-rich protein, partial (65%)
Length = 1179
Score = 27.7 bits (60), Expect = 2.3
Identities = 13/56 (23%), Positives = 29/56 (51%)
Frame = +1
Query: 10 SKKTDPKAQALKAAKAVKSGTAIKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATP 65
S+K+ ++ ++ + +K+ + K +R+ + PK+ RNP+ PR +P
Sbjct: 388 SRKSQRNRRSHRSLRNLKNQRNQRSPKSLRSPRSQRSPKSPRSPRNPRSPRSPRSP 555
>BG509785
Length = 315
Score = 27.3 bits (59), Expect = 3.0
Identities = 12/22 (54%), Positives = 15/22 (67%)
Frame = +3
Query: 100 LRADKKKIKDAVKKMYDIQAKK 121
L ADK ++ D V KMYDI +K
Sbjct: 105 LAADKDRVDDIVCKMYDISKEK 170
>TC228931 similar to UP|Q9FXI5 (Q9FXI5) F6F9.8 protein, partial (4%)
Length = 728
Score = 27.3 bits (59), Expect = 3.0
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 53 DRNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNT 93
D + PR ++T N L H F L TESA K+ NN+
Sbjct: 97 DHIDQEPRDNSTNNNSLPH-----FMLATESARAKVNANNS 204
>TC229419 UP|Q6PIN8 (Q6PIN8) TAO1 protein (Fragment), partial (5%)
Length = 895
Score = 26.9 bits (58), Expect = 3.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 88 IEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKK 121
++D+N + +VD R KKK K KK + KK
Sbjct: 622 VDDDNKIQILVDFRKKKKKKKKKKKKKKKKKKKK 723
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.132 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,184,677
Number of Sequences: 63676
Number of extensions: 47511
Number of successful extensions: 372
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of query: 154
length of database: 12,639,632
effective HSP length: 89
effective length of query: 65
effective length of database: 6,972,468
effective search space: 453210420
effective search space used: 453210420
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Medicago: description of AC139841.3