BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139841.2 - phase: 0 /pseudo
(285 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI973641 similar to GP|9758839|dbj UDP-galactose transporter rel... 196 8e-51
CO985910 70 4e-24
TC216446 weakly similar to UP|Q8NBK6 (Q8NBK6) Homo sapiens cDNA ... 72 2e-13
TC217345 similar to GB|AAL31174.1|16974529|AY060543 AT5g11750/T2... 30 0.96
TC227123 28 4.7
AW184885 28 4.7
BM108238 28 4.7
TC203673 homologue to UP|Q8GV31 (Q8GV31) Plastidic aldolase (Fra... 28 4.7
TC210882 similar to UP|P93167 (P93167) Asparagine synthetase 2 ... 28 6.2
TC225430 similar to GB|AAD03446.1|4115936|T4B21 coded for by A. ... 28 6.2
TC203874 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin ... 28 6.2
BE806843 27 8.1
TC227172 weakly similar to UP|Q8GT67 (Q8GT67) Xyloglucan-specifi... 27 8.1
BM885836 27 8.1
>BI973641 similar to GP|9758839|dbj UDP-galactose transporter related
protein-like {Arabidopsis thaliana}, partial (29%)
Length = 444
Score = 196 bits (499), Expect = 8e-51
Identities = 103/122 (84%), Positives = 107/122 (87%)
Frame = +3
Query: 3 MAETTTSSSSSSSLDDSNVTRNKLWKVAFAVSGIMLTLVTYGVLQEKIMRVPYGVNKDYF 62
MAETT S+S SS DSN NKLWK FAV+GIMLTL TYGVLQEKIMRVPYGVNKDYF
Sbjct: 81 MAETT-SASVSSPAGDSNWRENKLWKGTFAVAGIMLTLFTYGVLQEKIMRVPYGVNKDYF 257
Query: 63 KYSLFLVFCNRITTSAVSAAALVARDKALLPVAPIYKYCLVSVSNILTTTCQYEALKYVS 122
KYSLFLVFCNRITTSAVSA AL+A KAL PVAPIYKYCLVSVSNILTT+CQYEALKYVS
Sbjct: 258 KYSLFLVFCNRITTSAVSAGALLASKKALDPVAPIYKYCLVSVSNILTTSCQYEALKYVS 437
Query: 123 FP 124
FP
Sbjct: 438 FP 443
>CO985910
Length = 811
Score = 69.7 bits (169), Expect(2) = 4e-24
Identities = 37/48 (77%), Positives = 40/48 (83%)
Frame = -2
Query: 238 QVLSYKDI*YQL*SLFITIMIVSLTYYCFQPLQQLVNFLFPTQFAILV 285
QVLSYKDI YQL*S FI+I I LT +CFQ L+QLVNFLFPTQFA LV
Sbjct: 621 QVLSYKDIYYQL*SSFISIKIAFLTLHCFQLLRQLVNFLFPTQFAHLV 478
Score = 59.3 bits (142), Expect(2) = 4e-24
Identities = 24/27 (88%), Positives = 27/27 (99%)
Frame = -1
Query: 172 AGTDISPYGRGRENTIWGILLMIGYLG 198
AGTDISPYGRGRENT+WG+LLM+GYLG
Sbjct: 811 AGTDISPYGRGRENTVWGVLLMLGYLG 731
>TC216446 weakly similar to UP|Q8NBK6 (Q8NBK6) Homo sapiens cDNA PSEC0149
fis, clone PLACE1007338, partial (12%)
Length = 1397
Score = 72.4 bits (176), Expect = 2e-13
Identities = 46/141 (32%), Positives = 67/141 (46%)
Frame = +2
Query: 29 VAFAVSGIMLTLVTYGVLQEKIMRVPYGVNKDYFKYSLFLVFCNRITTSAVSAAALVARD 88
+AF V+GI + GVLQE + + N + F++ FL + S +
Sbjct: 110 LAFCVAGIWSAYIYQGVLQENVSTKRF--NGERFEHLAFLNLAQNVVCLIWSFIMIKMWA 283
Query: 89 KALLPVAPIYKYCLVSVSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWSALIMQKK 148
AP + Y ++N + EALKY+S+P Q LAK +KMIPVM+ L+ +
Sbjct: 284 SGNSGGAPWWSYWSAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIR 463
Query: 149 YQGTDYLLAFSVTLGCSIFIL 169
Y +YL F V G S F L
Sbjct: 464 YTFPEYLCTFLVAGGVSTFAL 526
>TC217345 similar to GB|AAL31174.1|16974529|AY060543 AT5g11750/T22P22_140
{Arabidopsis thaliana;} , partial (55%)
Length = 1049
Score = 30.4 bits (67), Expect = 0.96
Identities = 18/51 (35%), Positives = 24/51 (46%)
Frame = +2
Query: 169 LYPAGTDISPYGRGRENTIWGILLMIGYLGYHYKTQSLFAFRLFSLAYFVS 219
LY ++P ++ WG MI L Y T LFAF + S +FVS
Sbjct: 701 LYYLRERMNPLKN*HRSSSWGTFFMIHDLSYLVSTVYLFAFVVSSTRFFVS 853
>TC227123
Length = 1078
Score = 28.1 bits (61), Expect = 4.7
Identities = 22/60 (36%), Positives = 30/60 (49%), Gaps = 2/60 (3%)
Frame = +2
Query: 47 QEKIMRVPYGVNK--DYFKYSLFLVFCNRITTSAVSAAALVARDKALLPVAPIYKYCLVS 104
Q I+ VPY + + F +S+ F N ITT V A L + K LL A ++ LVS
Sbjct: 308 QRSIIPVPYLQTQMMERFYHSMGS*FGNYITTKNVPPAILKEQSKPLLKTAMYKQHMLVS 487
>AW184885
Length = 453
Score = 28.1 bits (61), Expect = 4.7
Identities = 14/23 (60%), Positives = 19/23 (81%)
Frame = +2
Query: 211 LFSLAYFVSFLSSLLESHSFHI* 233
+FS+++F SFLSS LES +F I*
Sbjct: 299 MFSVSFFFSFLSSHLESVNFGI* 367
>BM108238
Length = 413
Score = 28.1 bits (61), Expect = 4.7
Identities = 13/43 (30%), Positives = 25/43 (57%)
Frame = -3
Query: 70 FCNRITTSAVSAAALVARDKALLPVAPIYKYCLVSVSNILTTT 112
F +RI+ + +A L+AR + +LP + + L + N+L T+
Sbjct: 174 FRSRISKTDATAVELLARSEVMLPASAMTLPVLTNTKNVLNTS 46
>TC203673 homologue to UP|Q8GV31 (Q8GV31) Plastidic aldolase (Fragment),
partial (91%)
Length = 705
Score = 28.1 bits (61), Expect = 4.7
Identities = 15/40 (37%), Positives = 22/40 (54%)
Frame = +3
Query: 202 KTQSLFAFRLFSLAYFVSFLSSLLESHSFHI*LLFIQVLS 241
KT +F F+LFS +Y LSS E + +F Q+L+
Sbjct: 459 KTFGVFGFQLFSFSYLSFLLSSEFEGDLDVLYFIFFQLLA 578
>TC210882 similar to UP|P93167 (P93167) Asparagine synthetase 2 , partial
(30%)
Length = 873
Score = 27.7 bits (60), Expect = 6.2
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = +2
Query: 205 SLFAFRLFSLAYFVSFLS----SLLESHSFHI*LLFIQVLSYKDI 245
S F F FS+ +F FL SLL +HS HI I V+SY ++
Sbjct: 83 SFFIFSFFSIQFFSFFLKFCYFSLL-NHSSHIISSHIIVISYHNV 214
>TC225430 similar to GB|AAD03446.1|4115936|T4B21 coded for by A. thaliana
cDNA R89964 {Arabidopsis thaliana;} , complete
Length = 1178
Score = 27.7 bits (60), Expect = 6.2
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +2
Query: 154 YLLAFSVT-LGCSIFILYPAGTDISPYGRGRENTIWGILLMIGYLGYHYKTQSLFAFRLF 212
YL A VT +GCS+ I+ P ++P ++ W L+ +L Y K F F +F
Sbjct: 206 YLTAAVVTTIGCSLDIISPYHLYLNPRLVVKQYQFW--RLVTNFL-YFRKMDLDFLFHMF 376
Query: 213 SLAYFVSFLSSLLESHSF 230
LA + LLE +SF
Sbjct: 377 FLARY----CKLLEENSF 418
>TC203874 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (42%)
Length = 482
Score = 27.7 bits (60), Expect = 6.2
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 154 YLLAFSVTLGCSIFILYPAGTDISPYGRGRENTIWGILLMIGYLGYH 200
+LL ++ G SIF L P G+ + +WG L+I LG+H
Sbjct: 294 FLLDVIISKGSSIFKLLP--------GKDKPLLVWGNTLLILNLGFH 178
>BE806843
Length = 136
Score = 27.3 bits (59), Expect = 8.1
Identities = 14/30 (46%), Positives = 18/30 (59%)
Frame = +2
Query: 196 YLGYHYKTQSLFAFRLFSLAYFVSFLSSLL 225
Y H + S+F F FSL +F F+SSLL
Sbjct: 26 YFFPHSLSLSVFLFLTFSLYFFFLFISSLL 115
>TC227172 weakly similar to UP|Q8GT67 (Q8GT67) Xyloglucan-specific fungal
endoglucanase inhibitor protein, partial (68%)
Length = 1521
Score = 27.3 bits (59), Expect = 8.1
Identities = 33/125 (26%), Positives = 50/125 (39%)
Frame = +3
Query: 66 LFLVFCNRITTSAVSAAALVARDKALLPVAPIYKYCLVSVSNILTTTCQYEALKYVSFPV 125
LFL F + + +++ + R KAL V P+ K SV +T Q L V V
Sbjct: 60 LFLSFLSLFISFSIAQTSF--RPKAL--VLPVTKDVSASVPQYVTQIKQRTPLVAVKLTV 227
Query: 126 QTLAKCAKMIPVMIWSALIMQKKYQGTDYLLAFSVTLGCSIFILYPAGTDISPYGRGREN 185
+W + +K Y + A + CS+F LY T+ GR N
Sbjct: 228 DLGGG-------YLW--VNCEKGYVSSTSRPARCGSAQCSLFGLYGCSTEDKICGRSPSN 380
Query: 186 TIWGI 190
T+ G+
Sbjct: 381 TVTGV 395
>BM885836
Length = 422
Score = 27.3 bits (59), Expect = 8.1
Identities = 15/45 (33%), Positives = 23/45 (50%), Gaps = 6/45 (13%)
Frame = +1
Query: 192 LMIGYLG------YHYKTQSLFAFRLFSLAYFVSFLSSLLESHSF 230
L+IG +G YH+ TQ + L F+ F SS + +HS+
Sbjct: 220 LIIGSIGLF*TRSYHFDTQ*VVGSHSHKLVLFIYFFSSKMLAHSY 354
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.334 0.143 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,848,099
Number of Sequences: 63676
Number of extensions: 201924
Number of successful extensions: 1951
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1937
length of query: 285
length of database: 12,639,632
effective HSP length: 96
effective length of query: 189
effective length of database: 6,526,736
effective search space: 1233553104
effective search space used: 1233553104
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 58 (26.9 bits)
Medicago: description of AC139841.2