BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139841.15 - phase: 0
(147 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC203266 homologue to UP|H2B_GOSHI (O22582) Histone H2B, complete 267 2e-72
TC203388 homologue to UP|H2B_GOSHI (O22582) Histone H2B, complete 267 2e-72
TC203675 homologue to UP|H2B_GOSHI (O22582) Histone H2B, complete 266 2e-72
TC203335 homologue to UP|H2B_GOSHI (O22582) Histone H2B, complete 266 2e-72
TC203316 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial... 252 4e-68
TC215107 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, complete 236 4e-63
TC203315 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, complete 235 5e-63
TC215108 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, complete 234 9e-63
TC203659 homologue to UP|H2B_ARATH (P40283) Histone H2B, partial... 234 1e-62
TC218706 similar to UP|Q9FFC0 (Q9FFC0) Histone H2B like protein,... 228 1e-60
TC207384 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, partial (94%) 225 5e-60
TC218707 homologue to UP|O65819 (O65819) Histone H2B-3 (Fragment... 220 2e-58
TC207385 homologue to UP|Q9LFF6 (Q9LFF6) Histone H2B-like protei... 203 2e-53
AW164225 182 7e-47
TC203488 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial... 179 4e-46
AW705702 similar to GP|21554180|gb histone H2B-like protein {Ara... 174 1e-44
BE803400 103 2e-23
CD395557 96 6e-21
CD415775 GP|506629|gb|A photosystem II type I chlorophyll a/b-bi... 91 2e-19
CD405159 79 8e-16
>TC203266 homologue to UP|H2B_GOSHI (O22582) Histone H2B, complete
Length = 752
Score = 267 bits (682), Expect = 2e-72
Identities = 138/148 (93%), Positives = 142/148 (95%), Gaps = 1/148 (0%)
Frame = +1
Query: 1 MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAA-GDKKKRSKKNVET 59
MAPK EKKPAEKKPAEEKKSTV +KAPAEKKPKAGKKLPKEGG+ G KKKR+KK+VET
Sbjct: 118 MAPKAEKKPAEKKPAEEKKSTVGDKAPAEKKPKAGKKLPKEGGAGGEGKKKKRNKKSVET 297
Query: 60 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 119
YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT
Sbjct: 298 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 477
Query: 120 AVRLVLPGELAKHAVSEGTKAVTKFTSS 147
AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 478 AVRLVLPGELAKHAVSEGTKAVTKFTSS 561
>TC203388 homologue to UP|H2B_GOSHI (O22582) Histone H2B, complete
Length = 675
Score = 267 bits (682), Expect = 2e-72
Identities = 138/148 (93%), Positives = 142/148 (95%), Gaps = 1/148 (0%)
Frame = +2
Query: 1 MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAA-GDKKKRSKKNVET 59
MAPK EKKPAEKKPAEEKKSTV +KAPAEKKPKAGKKLPKEGG+ G KKKR+KK+VET
Sbjct: 83 MAPKAEKKPAEKKPAEEKKSTVGDKAPAEKKPKAGKKLPKEGGAGGEGKKKKRNKKSVET 262
Query: 60 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 119
YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT
Sbjct: 263 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 442
Query: 120 AVRLVLPGELAKHAVSEGTKAVTKFTSS 147
AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 443 AVRLVLPGELAKHAVSEGTKAVTKFTSS 526
>TC203675 homologue to UP|H2B_GOSHI (O22582) Histone H2B, complete
Length = 744
Score = 266 bits (681), Expect = 2e-72
Identities = 138/149 (92%), Positives = 142/149 (94%), Gaps = 2/149 (1%)
Frame = +3
Query: 1 MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAA--GDKKKRSKKNVE 58
MAPK EKKPAEKKPAEEKKSTV +KAPAEKKPKAGKKLPKEGG+ G KKKR+KK+VE
Sbjct: 30 MAPKAEKKPAEKKPAEEKKSTVGDKAPAEKKPKAGKKLPKEGGAGGEGGKKKKRNKKSVE 209
Query: 59 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ 118
TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ
Sbjct: 210 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ 389
Query: 119 TAVRLVLPGELAKHAVSEGTKAVTKFTSS 147
TAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 390 TAVRLVLPGELAKHAVSEGTKAVTKFTSS 476
>TC203335 homologue to UP|H2B_GOSHI (O22582) Histone H2B, complete
Length = 710
Score = 266 bits (681), Expect = 2e-72
Identities = 138/149 (92%), Positives = 142/149 (94%), Gaps = 2/149 (1%)
Frame = +3
Query: 1 MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAA--GDKKKRSKKNVE 58
MAPK EKKPAEKKPAEEKKSTV +KAPAEKKPKAGKKLPKEGG+ G KKKR+KK+VE
Sbjct: 75 MAPKAEKKPAEKKPAEEKKSTVGDKAPAEKKPKAGKKLPKEGGAGGEGGKKKKRNKKSVE 254
Query: 59 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ 118
TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ
Sbjct: 255 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ 434
Query: 119 TAVRLVLPGELAKHAVSEGTKAVTKFTSS 147
TAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 435 TAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
>TC203316 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial (97%)
Length = 734
Score = 252 bits (644), Expect = 4e-68
Identities = 134/148 (90%), Positives = 138/148 (92%), Gaps = 1/148 (0%)
Frame = +3
Query: 1 MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAA-GDKKKRSKKNVET 59
MAPK AEKKPAEEKKSTV +KAPAEKKPKAGKKLPKEGG+ G KKKR+KK+VET
Sbjct: 78 MAPK-----AEKKPAEEKKSTVGDKAPAEKKPKAGKKLPKEGGAGGEGKKKKRNKKSVET 242
Query: 60 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 119
YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT
Sbjct: 243 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 422
Query: 120 AVRLVLPGELAKHAVSEGTKAVTKFTSS 147
AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 423 AVRLVLPGELAKHAVSEGTKAVTKFTSS 506
>TC215107 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, complete
Length = 667
Score = 236 bits (601), Expect = 4e-63
Identities = 127/145 (87%), Positives = 130/145 (89%)
Frame = +3
Query: 3 PKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGDKKKRSKKNVETYKI 62
PK EKKPAEKKPAE KAPAEKKPKA KK+ KEGGS KKKR+KK+VETYKI
Sbjct: 99 PKAEKKPAEKKPAE--------KAPAEKKPKAEKKISKEGGSEK--KKKRTKKSVETYKI 248
Query: 63 YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVR 122
YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVR
Sbjct: 249 YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVR 428
Query: 123 LVLPGELAKHAVSEGTKAVTKFTSS 147
LVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 429 LVLPGELAKHAVSEGTKAVTKFTSS 503
>TC203315 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, complete
Length = 778
Score = 235 bits (600), Expect = 5e-63
Identities = 129/148 (87%), Positives = 133/148 (89%), Gaps = 1/148 (0%)
Frame = +3
Query: 1 MAP-KGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGDKKKRSKKNVET 59
MAP K EKKPAEKKPA AEKAPAEKKPKA KK+ KEGGS KKKR+KK+VET
Sbjct: 87 MAPAKAEKKPAEKKPA-------AEKAPAEKKPKAEKKISKEGGSEK--KKKRTKKSVET 239
Query: 60 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 119
YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQT
Sbjct: 240 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQT 419
Query: 120 AVRLVLPGELAKHAVSEGTKAVTKFTSS 147
AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 420 AVRLVLPGELAKHAVSEGTKAVTKFTSS 503
>TC215108 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, complete
Length = 712
Score = 234 bits (598), Expect = 9e-63
Identities = 129/148 (87%), Positives = 132/148 (89%), Gaps = 1/148 (0%)
Frame = +3
Query: 1 MAP-KGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGDKKKRSKKNVET 59
MAP K EKKPAEKKPAE KAPAEKKPKA KK+ KEGGS KKKR+KK+VET
Sbjct: 84 MAPAKAEKKPAEKKPAE--------KAPAEKKPKAEKKISKEGGSEK--KKKRTKKSVET 233
Query: 60 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 119
YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT
Sbjct: 234 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 413
Query: 120 AVRLVLPGELAKHAVSEGTKAVTKFTSS 147
AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 414 AVRLVLPGELAKHAVSEGTKAVTKFTSS 497
>TC203659 homologue to UP|H2B_ARATH (P40283) Histone H2B, partial (82%)
Length = 752
Score = 234 bits (596), Expect = 1e-62
Identities = 122/134 (91%), Positives = 126/134 (93%), Gaps = 1/134 (0%)
Frame = +3
Query: 15 AEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAA-GDKKKRSKKNVETYKIYIFKVLKQVHP 73
AEE TV +KAPAEKKPKAGKKLPKEGG+ G KKKR+KK+VETYKIYIFKVLKQVHP
Sbjct: 21 AEEMGETVGDKAPAEKKPKAGKKLPKEGGAGGEGKKKKRNKKSVETYKIYIFKVLKQVHP 200
Query: 74 DIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHA 133
DIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHA
Sbjct: 201 DIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHA 380
Query: 134 VSEGTKAVTKFTSS 147
VSEGTKAVTKFTSS
Sbjct: 381 VSEGTKAVTKFTSS 422
>TC218706 similar to UP|Q9FFC0 (Q9FFC0) Histone H2B like protein, partial
(94%)
Length = 583
Score = 228 bits (580), Expect = 1e-60
Identities = 124/144 (86%), Positives = 127/144 (88%)
Frame = +1
Query: 4 KGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGDKKKRSKKNVETYKIY 63
KGEKKPAEKKPAE KAPAEK KA KK+PKE S KKKR+KK+VETYKIY
Sbjct: 64 KGEKKPAEKKPAE--------KAPAEKT-KAEKKIPKEPASGEKKKKKRNKKSVETYKIY 216
Query: 64 IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 123
IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL
Sbjct: 217 IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 396
Query: 124 VLPGELAKHAVSEGTKAVTKFTSS 147
VLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 397 VLPGELAKHAVSEGTKAVTKFTSS 468
>TC207384 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, partial (94%)
Length = 592
Score = 225 bits (574), Expect = 5e-60
Identities = 122/140 (87%), Positives = 126/140 (89%)
Frame = +3
Query: 8 KPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGDKKKRSKKNVETYKIYIFKV 67
K AEKKPA AEKAPAEKKPKA KK+PKEG S KKKRSKK+VETYKIYIFKV
Sbjct: 66 KAAEKKPA-------AEKAPAEKKPKAEKKVPKEG-SGGEKKKKRSKKSVETYKIYIFKV 221
Query: 68 LKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG 127
LKQVHPDIGISSKAMGIMNSFINDIFEKLAQE++RLARYNKKPTITSREIQTAVRLVLPG
Sbjct: 222 LKQVHPDIGISSKAMGIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTAVRLVLPG 401
Query: 128 ELAKHAVSEGTKAVTKFTSS 147
ELAKHAVSEGTKAVTKFTSS
Sbjct: 402 ELAKHAVSEGTKAVTKFTSS 461
>TC218707 homologue to UP|O65819 (O65819) Histone H2B-3 (Fragment), partial
(97%)
Length = 509
Score = 220 bits (561), Expect = 2e-58
Identities = 121/144 (84%), Positives = 126/144 (87%)
Frame = +1
Query: 4 KGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGDKKKRSKKNVETYKIY 63
KGEKKPAEKKPA AEKAPAEK KA KK+PK+ S KKKR+KK+VETYKIY
Sbjct: 64 KGEKKPAEKKPA-------AEKAPAEKT-KAEKKIPKDAASGE-KKKKRTKKSVETYKIY 216
Query: 64 IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 123
IFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL
Sbjct: 217 IFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 396
Query: 124 VLPGELAKHAVSEGTKAVTKFTSS 147
VLPGEL KH VSEGTKAVTKFTSS
Sbjct: 397 VLPGELPKHPVSEGTKAVTKFTSS 468
>TC207385 homologue to UP|Q9LFF6 (Q9LFF6) Histone H2B-like protein, partial
(83%)
Length = 512
Score = 203 bits (517), Expect = 2e-53
Identities = 106/116 (91%), Positives = 110/116 (94%)
Frame = +3
Query: 32 PKAGKKLPKEGGSAAGDKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIND 91
PKA KK+PKEGG KKKRSKK+VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIND
Sbjct: 3 PKAEKKIPKEGGGEK--KKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIND 176
Query: 92 IFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 147
IFEKLAQE++RLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 177 IFEKLAQEAARLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 344
>AW164225
Length = 388
Score = 182 bits (461), Expect = 7e-47
Identities = 103/137 (75%), Positives = 110/137 (80%)
Frame = +2
Query: 11 EKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGDKKKRSKKNVETYKIYIFKVLKQ 70
EKKP EK + KKPKA K+ KEG S +KKK SKK+VETYKIYIFKVLKQ
Sbjct: 2 EKKPETEKDTE-------GKKPKAENKVSKEG-SGGENKKKMSKKSVETYKIYIFKVLKQ 157
Query: 71 VHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELA 130
VHP I ISSKAMGIMNSFIN IF+KLAQE+ RLARYNKK TITS EIQTAV+LVLPGELA
Sbjct: 158 VHPYIRISSKAMGIMNSFINYIFKKLAQEAPRLARYNKKRTITSTEIQTAVKLVLPGELA 337
Query: 131 KHAVSEGTKAVTKFTSS 147
KH VSEGTKAVTKFTSS
Sbjct: 338 KHPVSEGTKAVTKFTSS 388
>TC203488 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial (63%)
Length = 541
Score = 179 bits (454), Expect = 4e-46
Identities = 92/93 (98%), Positives = 93/93 (99%)
Frame = +2
Query: 55 KNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITS 114
K+VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITS
Sbjct: 38 KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITS 217
Query: 115 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 147
REIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 218 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 316
>AW705702 similar to GP|21554180|gb histone H2B-like protein {Arabidopsis
thaliana}, partial (80%)
Length = 370
Score = 174 bits (442), Expect = 1e-44
Identities = 88/123 (71%), Positives = 104/123 (84%), Gaps = 2/123 (1%)
Frame = +2
Query: 27 PAEKKPKAGKKLPKEG--GSAAGDKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGI 84
PAEKKPKA KKLPKEG G G KKK++KK+VETYKIYI KVLKQVHP+I ISSKAMGI
Sbjct: 2 PAEKKPKAKKKLPKEGRAGGERGKKKKKNKKSVETYKIYICKVLKQVHPNINISSKAMGI 181
Query: 85 MNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKF 144
+NSFIN+IFE L QES RLA YNK PTITS+EIQT ++L+LPG+L KH +S+ T+ +TK+
Sbjct: 182 INSFINNIFEXLTQESCRLAHYNKXPTITSKEIQTTIKLMLPGKLTKHXMSKDTETITKW 361
Query: 145 TSS 147
TSS
Sbjct: 362 TSS 370
>BE803400
Length = 355
Score = 103 bits (258), Expect = 2e-23
Identities = 63/120 (52%), Positives = 78/120 (64%)
Frame = +2
Query: 28 AEKKPKAGKKLPKEGGSAAGDKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNS 87
A+ KP A + +G S R++K+V TYKIYIF V QV P + I +AM IM S
Sbjct: 2 ADMKPVADNTISMDGRSYM--ISMRTEKSVPTYKIYIFNV*NQVLPYMSIFGQAMVIMIS 175
Query: 88 FINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 147
F+++IF+KLAQESSRLARY+ K +ITS EI A RLVLPG LA HA S G V F+ S
Sbjct: 176 FVSNIFKKLAQESSRLARYHMKLSITSMEIHAAARLVLPG*LAMHAASGGALVVAIFSIS 355
>CD395557
Length = 680
Score = 95.9 bits (237), Expect = 6e-21
Identities = 57/98 (58%), Positives = 67/98 (68%), Gaps = 7/98 (7%)
Frame = -3
Query: 57 VETYKIYIFKVLKQVHPD----IGISSKAMG---IMNSFINDIFEKLAQESSRLARYNKK 109
V T+K++I V+ VH + + S G +S I + + +RLARYNKK
Sbjct: 576 VHTWKLHIGGVISNVHESGIHHLVVHSVLCGSTKTTSSCIKIVASCRIRHEARLARYNKK 397
Query: 110 PTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 147
PTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 396 PTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 283
>CD415775 GP|506629|gb|A photosystem II type I chlorophyll a/b-binding
protein {Glycine max}, partial (34%)
Length = 625
Score = 90.9 bits (224), Expect = 2e-19
Identities = 46/46 (100%), Positives = 46/46 (100%)
Frame = -3
Query: 102 RLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 147
RLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 329 RLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 192
>CD405159
Length = 694
Score = 79.0 bits (193), Expect = 8e-16
Identities = 40/40 (100%), Positives = 40/40 (100%)
Frame = +1
Query: 108 KKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 147
KKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 397 KKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 516
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.306 0.125 0.328
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,205,484
Number of Sequences: 63676
Number of extensions: 42092
Number of successful extensions: 709
Number of sequences better than 10.0: 212
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of query: 147
length of database: 12,639,632
effective HSP length: 88
effective length of query: 59
effective length of database: 7,036,144
effective search space: 415132496
effective search space used: 415132496
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 54 (25.4 bits)
Medicago: description of AC139841.15