BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139841.14 + phase: 0 /pseudo
(99 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC215070 similar to UP|Q40336 (Q40336) Proline-rich cell wall pr... 30 0.15
TC215069 similar to UP|O24300 (O24300) PtxA protein precursor, p... 29 0.43
TC227797 similar to UP|Q8H1N8 (Q8H1N8) At1g20880/F9H16_14, parti... 29 0.43
BI974540 28 0.73
TC231231 weakly similar to UP|Q88TJ4 (Q88TJ4) Cell surface prote... 28 0.73
BI892752 similar to GP|22208478|gb| receptor-like kinase {Sorghu... 28 0.95
BM953713 28 0.95
BI785222 27 1.2
TC206183 weakly similar to UP|Q9LSN7 (Q9LSN7) Gb|AAC24081.1 (AT3... 27 1.2
TC210695 similar to GB|AAL91289.1|19699359|AY090445 At1g79720/F1... 27 1.6
TC218853 27 1.6
NP005117 51 kDa seed maturation protein 27 1.6
TC221300 similar to UP|Q9LDT3 (Q9LDT3) F26F24.29 (F28C11.6), par... 27 1.6
TC226136 similar to UP|O48847 (O48847) Expressed protein (At2g32... 27 2.1
TC207072 similar to UP|Q8RXD3 (Q8RXD3) ABI3-interacting protein ... 27 2.1
CN472325 27 2.1
TC222379 homologue to UP|Q9HGV7 (Q9HGV7) Gbeta like protein, par... 27 2.1
TC208443 similar to UP|Q7R3L6 (Q7R3L6) GLP_39_87477_88058, parti... 26 2.8
TC207624 26 2.8
TC234022 26 3.6
>TC215070 similar to UP|Q40336 (Q40336) Proline-rich cell wall protein,
partial (82%)
Length = 1597
Score = 30.4 bits (67), Expect = 0.15
Identities = 21/73 (28%), Positives = 36/73 (48%), Gaps = 2/73 (2%)
Frame = +3
Query: 21 SLTLLILFLQIPNTRVPSEAPSKP--HLRFPKSTCDFTSTHLHLPSHKKNNRLWSSRDWN 78
+L + L + I T +PS S P + RF H+H PSH +N+ +++ +
Sbjct: 84 ALCSMFLLVPIALTLLPSLQKSLPL*NHRFTNH-----QNHVHHPSHLQNHPMYTLPMFQ 248
Query: 79 NKLHSFSRLFLHI 91
N L + + F+HI
Sbjct: 249 NLLTTLNHQFIHI 287
>TC215069 similar to UP|O24300 (O24300) PtxA protein precursor, partial (83%)
Length = 1405
Score = 28.9 bits (63), Expect = 0.43
Identities = 21/76 (27%), Positives = 35/76 (45%), Gaps = 2/76 (2%)
Frame = +3
Query: 18 AIASLTLLILFLQIPNTRVPSEAPSKPHLRFPKSTCDFTST--HLHLPSHKKNNRLWSSR 75
A+ S+ LL+L + PS P FT+ H+H PSH +N+ +++
Sbjct: 78 ALCSMFLLVLIAL-------AHLPSLLQKSLPL*NHQFTNNQNHVHHPSHLQNHPMYTHP 236
Query: 76 DWNNKLHSFSRLFLHI 91
N L + + F+HI
Sbjct: 237 MSQNLLTTLNHQFIHI 284
>TC227797 similar to UP|Q8H1N8 (Q8H1N8) At1g20880/F9H16_14, partial (59%)
Length = 1737
Score = 28.9 bits (63), Expect = 0.43
Identities = 18/58 (31%), Positives = 29/58 (49%), Gaps = 1/58 (1%)
Frame = -3
Query: 21 SLTLLILFLQIPNTRVPSEAPSKPHLRFPKSTCDFTSTHLH-LPSHKKNNRLWSSRDW 77
++ LL++ LQ +T L P +C +T LH L +NN+LW +R+W
Sbjct: 1174 AVPLLLVLLQTMDT-----------LFAPSPSCLVRTTTLHKLRRRSRNNKLWLARNW 1034
>BI974540
Length = 422
Score = 28.1 bits (61), Expect = 0.73
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 65 HKKNNRLWSSRDWNNKLHSFSRLF 88
H NRLWS NNK+H S +F
Sbjct: 315 HNHRNRLWSML*NNNKMHQNSSIF 244
>TC231231 weakly similar to UP|Q88TJ4 (Q88TJ4) Cell surface protein, partial
(10%)
Length = 1077
Score = 28.1 bits (61), Expect = 0.73
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -1
Query: 58 THLHLPSHKKNNRLWSSRDWNNKLHSFSRLFL--HIRNLGLL 97
T+ H +H N W++R W N+ HS +R + H+ N +L
Sbjct: 663 TNRHSMNHHSKNLHWTNRHWMNR-HSTNRHLMNRHLMNYSIL 541
>BI892752 similar to GP|22208478|gb| receptor-like kinase {Sorghum bicolor},
partial (7%)
Length = 306
Score = 27.7 bits (60), Expect = 0.95
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = +3
Query: 60 LHLPSHKKNNRLWSSRDWNNKL--HSFS 85
L + S KKNNRL+ D+NN L H++S
Sbjct: 108 LEIVSGKKNNRLFYPNDYNNNLIGHAWS 191
>BM953713
Length = 395
Score = 27.7 bits (60), Expect = 0.95
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 42 SKPHLRFPKSTCDFTSTHLHLPSH 65
S P+L FP F STH H+PS+
Sbjct: 131 SIPYLLFPSFFFPFNSTHPHVPSY 202
>BI785222
Length = 458
Score = 27.3 bits (59), Expect = 1.2
Identities = 15/41 (36%), Positives = 24/41 (57%)
Frame = +3
Query: 50 KSTCDFTSTHLHLPSHKKNNRLWSSRDWNNKLHSFSRLFLH 90
K + DF+ ++ L K NNR W+ +D + K SF L++H
Sbjct: 102 KKSRDFSKVNMILTL*KANNR*WTRKDISFK-SSFK*LYMH 221
>TC206183 weakly similar to UP|Q9LSN7 (Q9LSN7) Gb|AAC24081.1
(AT3g17100/K14A17_22_), partial (30%)
Length = 895
Score = 27.3 bits (59), Expect = 1.2
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = +1
Query: 28 FLQIPNTRV--PSEAPSKPHLRFPKSTCDFTSTHLHLPSHKKNNRLWSSRDWNNKLHSFS 85
F+ P T + P P L F T F H HL H++ RLWS + + +
Sbjct: 49 FISFPLTLILYPQSISKFPILIFKN*T--FFKWHRHLHHHRRRRRLWSQIQFRTRTGHVT 222
Query: 86 R 86
R
Sbjct: 223 R 225
>TC210695 similar to GB|AAL91289.1|19699359|AY090445 At1g79720/F19K16_30
{Arabidopsis thaliana;} , partial (37%)
Length = 1041
Score = 26.9 bits (58), Expect = 1.6
Identities = 11/24 (45%), Positives = 15/24 (61%)
Frame = -3
Query: 26 ILFLQIPNTRVPSEAPSKPHLRFP 49
+LFL PNT++ +E P KP P
Sbjct: 76 LLFLPQPNTKLLTEMPPKPSFSIP 5
>TC218853
Length = 1062
Score = 26.9 bits (58), Expect = 1.6
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 38 SEAPSKPHLRFPKSTCDFTSTHLHLPSHKKNNRLWSSRDWNNKLHSFSRL 87
S +PSKP + S H + + ++ L+SS +NKL SRL
Sbjct: 191 SYSPSKPPKKPCMSPIKVLENHRSIKMKESDDELFSSSGLDNKLEGSSRL 340
>NP005117 51 kDa seed maturation protein
Length = 1422
Score = 26.9 bits (58), Expect = 1.6
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = -3
Query: 59 HLHLPSHKKNNRLWSS--RDWNNKLHS 83
HLH P + + LWSS R W+N L S
Sbjct: 619 HLHSPWSSE*HNLWSSVLRQWHNPLSS 539
>TC221300 similar to UP|Q9LDT3 (Q9LDT3) F26F24.29 (F28C11.6), partial (20%)
Length = 759
Score = 26.9 bits (58), Expect = 1.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2
Query: 56 TSTHLHLPSHKKNNRLWSSR 75
TST+ HL KK N LWS R
Sbjct: 725 TSTNKHLREPKKKNPLWSRR 666
>TC226136 similar to UP|O48847 (O48847) Expressed protein
(At2g32700/F24L7.16), partial (42%)
Length = 1463
Score = 26.6 bits (57), Expect = 2.1
Identities = 15/43 (34%), Positives = 20/43 (45%)
Frame = +3
Query: 57 STHLHLPSHKKNNRLWSSRDWNNKLHSFSRLFLHIRNLGLLPK 99
ST L S RLW + D LH++S H+ +L PK
Sbjct: 393 STQLATSSFDTTVRLWDAADPTFPLHTYSGHTSHVVSLDFHPK 521
>TC207072 similar to UP|Q8RXD3 (Q8RXD3) ABI3-interacting protein 2, partial
(79%)
Length = 1208
Score = 26.6 bits (57), Expect = 2.1
Identities = 9/21 (42%), Positives = 15/21 (70%)
Frame = +3
Query: 66 KKNNRLWSSRDWNNKLHSFSR 86
K N R+WS+R+W N +++ R
Sbjct: 126 KWNRRIWSNRNWRNCRNNWGR 188
>CN472325
Length = 444
Score = 26.6 bits (57), Expect = 2.1
Identities = 17/58 (29%), Positives = 28/58 (47%), Gaps = 1/58 (1%)
Frame = -2
Query: 21 SLTLLILFLQIPNTRVPSEAPSKPHLRFPKSTCDFTSTHLH-LPSHKKNNRLWSSRDW 77
++ LL++ LQ +T L P +C + LH L +NN+LW +R+W
Sbjct: 284 AVPLLLVLLQTMDT-----------LFAPSPSCLIRTATLHKLRRMSRNNKLWLARNW 144
>TC222379 homologue to UP|Q9HGV7 (Q9HGV7) Gbeta like protein, partial (84%)
Length = 950
Score = 26.6 bits (57), Expect = 2.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 69 NRLWSSRDWNNKLHSFSRLFL 89
NR+W S D ++HS SR FL
Sbjct: 743 NRVWPSADQAREMHSGSRAFL 681
>TC208443 similar to UP|Q7R3L6 (Q7R3L6) GLP_39_87477_88058, partial (9%)
Length = 651
Score = 26.2 bits (56), Expect = 2.8
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 53 CDFTSTHLHLPSHKKNNRLWSSRDWNNKLHS 83
C +S+H + S + + W +RDW N + S
Sbjct: 335 CSISSSHFSILSRTRCWK*WEARDWLNCVRS 427
>TC207624
Length = 660
Score = 26.2 bits (56), Expect = 2.8
Identities = 12/27 (44%), Positives = 13/27 (47%)
Frame = +1
Query: 45 HLRFPKSTCDFTSTHLHLPSHKKNNRL 71
HLR STC TH PSH R+
Sbjct: 127 HLRMASSTCLLPPTHDRHPSHSPVTRI 207
>TC234022
Length = 475
Score = 25.8 bits (55), Expect = 3.6
Identities = 15/40 (37%), Positives = 18/40 (44%)
Frame = -1
Query: 24 LLILFLQIPNTRVPSEAPSKPHLRFPKSTCDFTSTHLHLP 63
LLILFL + N PS+ KP P F+ L P
Sbjct: 214 LLILFLTLYNCNQPSQKKIKPSSVLPTKLFPFSFNFLFPP 95
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.323 0.136 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,622,024
Number of Sequences: 63676
Number of extensions: 96689
Number of successful extensions: 815
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of query: 99
length of database: 12,639,632
effective HSP length: 75
effective length of query: 24
effective length of database: 7,863,932
effective search space: 188734368
effective search space used: 188734368
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)
Medicago: description of AC139841.14