BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139841.13 - phase: 0
(148 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC203388 homologue to UP|H2B_GOSHI (O22582) Histone H2B, complete 270 1e-73
TC203266 homologue to UP|H2B_GOSHI (O22582) Histone H2B, complete 270 1e-73
TC203335 homologue to UP|H2B_GOSHI (O22582) Histone H2B, complete 269 4e-73
TC203675 homologue to UP|H2B_GOSHI (O22582) Histone H2B, complete 269 4e-73
TC203316 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial... 256 4e-69
TC215107 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, complete 239 5e-64
TC203315 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, complete 238 6e-64
TC215108 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, complete 238 1e-63
TC203659 homologue to UP|H2B_ARATH (P40283) Histone H2B, partial... 237 1e-63
TC207384 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, partial (94%) 230 2e-61
TC218707 homologue to UP|O65819 (O65819) Histone H2B-3 (Fragment... 226 2e-60
TC218706 similar to UP|Q9FFC0 (Q9FFC0) Histone H2B like protein,... 226 4e-60
TC207385 homologue to UP|Q9LFF6 (Q9LFF6) Histone H2B-like protei... 209 5e-55
AW164225 184 2e-47
TC203488 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial... 179 4e-46
AW705702 similar to GP|21554180|gb histone H2B-like protein {Ara... 172 4e-44
BE803400 103 3e-23
CD395557 96 6e-21
CD415775 GP|506629|gb|A photosystem II type I chlorophyll a/b-bi... 91 2e-19
CD405159 79 8e-16
>TC203388 homologue to UP|H2B_GOSHI (O22582) Histone H2B, complete
Length = 675
Score = 270 bits (691), Expect = 1e-73
Identities = 138/148 (93%), Positives = 142/148 (95%)
Frame = +2
Query: 1 MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGDKKKKRSKKNVET 60
MAPK EKKPAEKKPAEEKKSTV +KAPAEKKPKAGKKLPKEGG+ KKKKR+KK+VET
Sbjct: 83 MAPKAEKKPAEKKPAEEKKSTVGDKAPAEKKPKAGKKLPKEGGAGGEGKKKKRNKKSVET 262
Query: 61 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 120
YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT
Sbjct: 263 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 442
Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148
AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 443 AVRLVLPGELAKHAVSEGTKAVTKFTSS 526
>TC203266 homologue to UP|H2B_GOSHI (O22582) Histone H2B, complete
Length = 752
Score = 270 bits (691), Expect = 1e-73
Identities = 138/148 (93%), Positives = 142/148 (95%)
Frame = +1
Query: 1 MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGDKKKKRSKKNVET 60
MAPK EKKPAEKKPAEEKKSTV +KAPAEKKPKAGKKLPKEGG+ KKKKR+KK+VET
Sbjct: 118 MAPKAEKKPAEKKPAEEKKSTVGDKAPAEKKPKAGKKLPKEGGAGGEGKKKKRNKKSVET 297
Query: 61 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 120
YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT
Sbjct: 298 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 477
Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148
AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 478 AVRLVLPGELAKHAVSEGTKAVTKFTSS 561
>TC203335 homologue to UP|H2B_GOSHI (O22582) Histone H2B, complete
Length = 710
Score = 269 bits (687), Expect = 4e-73
Identities = 139/149 (93%), Positives = 143/149 (95%), Gaps = 1/149 (0%)
Frame = +3
Query: 1 MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAA-GDKKKKRSKKNVE 59
MAPK EKKPAEKKPAEEKKSTV +KAPAEKKPKAGKKLPKEGG+ G KKKKR+KK+VE
Sbjct: 75 MAPKAEKKPAEKKPAEEKKSTVGDKAPAEKKPKAGKKLPKEGGAGGEGGKKKKRNKKSVE 254
Query: 60 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ 119
TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ
Sbjct: 255 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ 434
Query: 120 TAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
TAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 435 TAVRLVLPGELAKHAVSEGTKAVTKFTSS 521
>TC203675 homologue to UP|H2B_GOSHI (O22582) Histone H2B, complete
Length = 744
Score = 269 bits (687), Expect = 4e-73
Identities = 139/149 (93%), Positives = 143/149 (95%), Gaps = 1/149 (0%)
Frame = +3
Query: 1 MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAA-GDKKKKRSKKNVE 59
MAPK EKKPAEKKPAEEKKSTV +KAPAEKKPKAGKKLPKEGG+ G KKKKR+KK+VE
Sbjct: 30 MAPKAEKKPAEKKPAEEKKSTVGDKAPAEKKPKAGKKLPKEGGAGGEGGKKKKRNKKSVE 209
Query: 60 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ 119
TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ
Sbjct: 210 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ 389
Query: 120 TAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
TAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 390 TAVRLVLPGELAKHAVSEGTKAVTKFTSS 476
>TC203316 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial (97%)
Length = 734
Score = 256 bits (653), Expect = 4e-69
Identities = 134/148 (90%), Positives = 138/148 (92%)
Frame = +3
Query: 1 MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGDKKKKRSKKNVET 60
MAPK AEKKPAEEKKSTV +KAPAEKKPKAGKKLPKEGG+ KKKKR+KK+VET
Sbjct: 78 MAPK-----AEKKPAEEKKSTVGDKAPAEKKPKAGKKLPKEGGAGGEGKKKKRNKKSVET 242
Query: 61 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 120
YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT
Sbjct: 243 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 422
Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148
AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 423 AVRLVLPGELAKHAVSEGTKAVTKFTSS 506
>TC215107 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, complete
Length = 667
Score = 239 bits (609), Expect = 5e-64
Identities = 128/146 (87%), Positives = 132/146 (89%)
Frame = +3
Query: 3 PKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGDKKKKRSKKNVETYK 62
PK EKKPAEKKPAE KAPAEKKPKA KK+ KEGGS +KKKKR+KK+VETYK
Sbjct: 99 PKAEKKPAEKKPAE--------KAPAEKKPKAEKKISKEGGS---EKKKKRTKKSVETYK 245
Query: 63 IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAV 122
IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAV
Sbjct: 246 IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAV 425
Query: 123 RLVLPGELAKHAVSEGTKAVTKFTSS 148
RLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 426 RLVLPGELAKHAVSEGTKAVTKFTSS 503
>TC203315 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, complete
Length = 778
Score = 238 bits (608), Expect = 6e-64
Identities = 130/149 (87%), Positives = 135/149 (90%), Gaps = 1/149 (0%)
Frame = +3
Query: 1 MAP-KGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGDKKKKRSKKNVE 59
MAP K EKKPAEKKPA AEKAPAEKKPKA KK+ KEGGS +KKKKR+KK+VE
Sbjct: 87 MAPAKAEKKPAEKKPA-------AEKAPAEKKPKAEKKISKEGGS---EKKKKRTKKSVE 236
Query: 60 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ 119
TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQ
Sbjct: 237 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQ 416
Query: 120 TAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
TAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 417 TAVRLVLPGELAKHAVSEGTKAVTKFTSS 503
>TC215108 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, complete
Length = 712
Score = 238 bits (606), Expect = 1e-63
Identities = 130/149 (87%), Positives = 134/149 (89%), Gaps = 1/149 (0%)
Frame = +3
Query: 1 MAP-KGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGDKKKKRSKKNVE 59
MAP K EKKPAEKKPAE KAPAEKKPKA KK+ KEGGS +KKKKR+KK+VE
Sbjct: 84 MAPAKAEKKPAEKKPAE--------KAPAEKKPKAEKKISKEGGS---EKKKKRTKKSVE 230
Query: 60 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ 119
TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ
Sbjct: 231 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ 410
Query: 120 TAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
TAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 411 TAVRLVLPGELAKHAVSEGTKAVTKFTSS 497
>TC203659 homologue to UP|H2B_ARATH (P40283) Histone H2B, partial (82%)
Length = 752
Score = 237 bits (605), Expect = 1e-63
Identities = 122/134 (91%), Positives = 126/134 (93%)
Frame = +3
Query: 15 AEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGDKKKKRSKKNVETYKIYIFKVLKQVHP 74
AEE TV +KAPAEKKPKAGKKLPKEGG+ KKKKR+KK+VETYKIYIFKVLKQVHP
Sbjct: 21 AEEMGETVGDKAPAEKKPKAGKKLPKEGGAGGEGKKKKRNKKSVETYKIYIFKVLKQVHP 200
Query: 75 DIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHA 134
DIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHA
Sbjct: 201 DIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHA 380
Query: 135 VSEGTKAVTKFTSS 148
VSEGTKAVTKFTSS
Sbjct: 381 VSEGTKAVTKFTSS 422
>TC207384 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, partial (94%)
Length = 592
Score = 230 bits (586), Expect = 2e-61
Identities = 123/141 (87%), Positives = 129/141 (91%)
Frame = +3
Query: 8 KPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGDKKKKRSKKNVETYKIYIFK 67
K AEKKPA AEKAPAEKKPKA KK+PKEG + G+KKKKRSKK+VETYKIYIFK
Sbjct: 66 KAAEKKPA-------AEKAPAEKKPKAEKKVPKEG--SGGEKKKKRSKKSVETYKIYIFK 218
Query: 68 VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 127
VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE++RLARYNKKPTITSREIQTAVRLVLP
Sbjct: 219 VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTAVRLVLP 398
Query: 128 GELAKHAVSEGTKAVTKFTSS 148
GELAKHAVSEGTKAVTKFTSS
Sbjct: 399 GELAKHAVSEGTKAVTKFTSS 461
>TC218707 homologue to UP|O65819 (O65819) Histone H2B-3 (Fragment), partial
(97%)
Length = 509
Score = 226 bits (577), Expect = 2e-60
Identities = 123/145 (84%), Positives = 131/145 (89%)
Frame = +1
Query: 4 KGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGDKKKKRSKKNVETYKI 63
KGEKKPAEKKPA AEKAPAEK KA KK+PK+ +A+G+KKKKR+KK+VETYKI
Sbjct: 64 KGEKKPAEKKPA-------AEKAPAEKT-KAEKKIPKD--AASGEKKKKRTKKSVETYKI 213
Query: 64 YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVR 123
YIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVR
Sbjct: 214 YIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVR 393
Query: 124 LVLPGELAKHAVSEGTKAVTKFTSS 148
LVLPGEL KH VSEGTKAVTKFTSS
Sbjct: 394 LVLPGELPKHPVSEGTKAVTKFTSS 468
>TC218706 similar to UP|Q9FFC0 (Q9FFC0) Histone H2B like protein, partial
(94%)
Length = 583
Score = 226 bits (575), Expect = 4e-60
Identities = 125/145 (86%), Positives = 128/145 (88%)
Frame = +1
Query: 4 KGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGDKKKKRSKKNVETYKI 63
KGEKKPAEKKPAE KAPAEK KA KK+PKE S KKKKR+KK+VETYKI
Sbjct: 64 KGEKKPAEKKPAE--------KAPAEKT-KAEKKIPKEPASGE-KKKKKRNKKSVETYKI 213
Query: 64 YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVR 123
YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVR
Sbjct: 214 YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVR 393
Query: 124 LVLPGELAKHAVSEGTKAVTKFTSS 148
LVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 394 LVLPGELAKHAVSEGTKAVTKFTSS 468
>TC207385 homologue to UP|Q9LFF6 (Q9LFF6) Histone H2B-like protein, partial
(83%)
Length = 512
Score = 209 bits (531), Expect = 5e-55
Identities = 108/117 (92%), Positives = 113/117 (96%)
Frame = +3
Query: 32 PKAGKKLPKEGGSAAGDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIN 91
PKA KK+PKEGG G+KKKKRSKK+VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIN
Sbjct: 3 PKAEKKIPKEGG---GEKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIN 173
Query: 92 DIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
DIFEKLAQE++RLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 174 DIFEKLAQEAARLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 344
>AW164225
Length = 388
Score = 184 bits (466), Expect = 2e-47
Identities = 103/138 (74%), Positives = 111/138 (79%)
Frame = +2
Query: 11 EKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGDKKKKRSKKNVETYKIYIFKVLK 70
EKKP EK + KKPKA K+ KEG + G+ KKK SKK+VETYKIYIFKVLK
Sbjct: 2 EKKPETEKDTE-------GKKPKAENKVSKEG--SGGENKKKMSKKSVETYKIYIFKVLK 154
Query: 71 QVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGEL 130
QVHP I ISSKAMGIMNSFIN IF+KLAQE+ RLARYNKK TITS EIQTAV+LVLPGEL
Sbjct: 155 QVHPYIRISSKAMGIMNSFINYIFKKLAQEAPRLARYNKKRTITSTEIQTAVKLVLPGEL 334
Query: 131 AKHAVSEGTKAVTKFTSS 148
AKH VSEGTKAVTKFTSS
Sbjct: 335 AKHPVSEGTKAVTKFTSS 388
>TC203488 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial (63%)
Length = 541
Score = 179 bits (454), Expect = 4e-46
Identities = 92/93 (98%), Positives = 93/93 (99%)
Frame = +2
Query: 56 KNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITS 115
K+VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITS
Sbjct: 38 KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITS 217
Query: 116 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
REIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 218 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 316
>AW705702 similar to GP|21554180|gb histone H2B-like protein {Arabidopsis
thaliana}, partial (80%)
Length = 370
Score = 172 bits (437), Expect = 4e-44
Identities = 89/124 (71%), Positives = 106/124 (84%), Gaps = 2/124 (1%)
Frame = +2
Query: 27 PAEKKPKAGKKLPKEGGSAAGD--KKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMG 84
PAEKKPKA KKLPKEG A G+ KKKK++KK+VETYKIYI KVLKQVHP+I ISSKAMG
Sbjct: 2 PAEKKPKAKKKLPKEG-RAGGERGKKKKKNKKSVETYKIYICKVLKQVHPNINISSKAMG 178
Query: 85 IMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 144
I+NSFIN+IFE L QES RLA YNK PTITS+EIQT ++L+LPG+L KH +S+ T+ +TK
Sbjct: 179 IINSFINNIFEXLTQESCRLAHYNKXPTITSKEIQTTIKLMLPGKLTKHXMSKDTETITK 358
Query: 145 FTSS 148
+TSS
Sbjct: 359 WTSS 370
>BE803400
Length = 355
Score = 103 bits (257), Expect = 3e-23
Identities = 63/121 (52%), Positives = 78/121 (64%)
Frame = +2
Query: 28 AEKKPKAGKKLPKEGGSAAGDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMN 87
A+ KP A + +G S R++K+V TYKIYIF V QV P + I +AM IM
Sbjct: 2 ADMKPVADNTISMDGRSYM---ISMRTEKSVPTYKIYIFNV*NQVLPYMSIFGQAMVIMI 172
Query: 88 SFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 147
SF+++IF+KLAQESSRLARY+ K +ITS EI A RLVLPG LA HA S G V F+
Sbjct: 173 SFVSNIFKKLAQESSRLARYHMKLSITSMEIHAAARLVLPG*LAMHAASGGALVVAIFSI 352
Query: 148 S 148
S
Sbjct: 353 S 355
>CD395557
Length = 680
Score = 95.9 bits (237), Expect = 6e-21
Identities = 57/98 (58%), Positives = 67/98 (68%), Gaps = 7/98 (7%)
Frame = -3
Query: 58 VETYKIYIFKVLKQVHPD----IGISSKAMG---IMNSFINDIFEKLAQESSRLARYNKK 110
V T+K++I V+ VH + + S G +S I + + +RLARYNKK
Sbjct: 576 VHTWKLHIGGVISNVHESGIHHLVVHSVLCGSTKTTSSCIKIVASCRIRHEARLARYNKK 397
Query: 111 PTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
PTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 396 PTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 283
>CD415775 GP|506629|gb|A photosystem II type I chlorophyll a/b-binding
protein {Glycine max}, partial (34%)
Length = 625
Score = 90.9 bits (224), Expect = 2e-19
Identities = 46/46 (100%), Positives = 46/46 (100%)
Frame = -3
Query: 103 RLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
RLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 329 RLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 192
>CD405159
Length = 694
Score = 79.0 bits (193), Expect = 8e-16
Identities = 40/40 (100%), Positives = 40/40 (100%)
Frame = +1
Query: 109 KKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
KKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 397 KKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 516
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.306 0.125 0.327
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,269,702
Number of Sequences: 63676
Number of extensions: 43124
Number of successful extensions: 835
Number of sequences better than 10.0: 233
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of query: 148
length of database: 12,639,632
effective HSP length: 88
effective length of query: 60
effective length of database: 7,036,144
effective search space: 422168640
effective search space used: 422168640
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 54 (25.4 bits)
Medicago: description of AC139841.13