BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139841.10 - phase: 0
(213 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC203376 homologue to UP|Q41023 (Q41023) Small GTP-binding prote... 360 e-100
TC215024 homologue to GB|BAB08351.1|9757904|AB015475 Rab-type sm... 360 e-100
TC203292 homologue to UP|Q8W3J4 (Q8W3J4) Ras-related protein RAB... 359 e-100
TC215026 homologue to UP|Q40219 (Q40219) RAB8E, partial (92%) 349 5e-97
TC215025 homologue to GB|BAB08351.1|9757904|AB015475 Rab-type sm... 233 5e-62
TC227973 UP|Q39845 (Q39845) Small GTP-binding protein, complete 229 7e-61
TC225644 UP|Q40203 (Q40203) RAB1C, complete 221 2e-58
TC206346 homologue to UP|Q08154 (Q08154) GTP-binding protein, co... 219 7e-58
TC221792 UP|Q39861 (Q39861) GTP binding protein, complete 213 7e-56
TC216317 UP|Q43462 (Q43462) Rab7p protein, complete 211 3e-55
TC203411 UP|Q41023 (Q41023) Small GTP-binding protein, partial (... 209 8e-55
TC216318 homologue to UP|Q43462 (Q43462) Rab7p protein, complete 208 1e-54
TC205442 UP|Q40208 (Q40208) RAB2A, complete 169 1e-42
TC206349 UP|P92963 (P92963) Rab2-like protein (GTP-binding RAB2A... 164 2e-41
TC218982 homologue to UP|Q38922 (Q38922) ATGB2 (GTP-binding prot... 161 2e-40
TC214158 homologue to UP|R11C_LOTJA (Q40193) Ras-related protein... 160 4e-40
TC214200 homologue to UP|R11C_LOTJA (Q40193) Ras-related protein... 159 7e-40
TC206925 homologue to UP|Q39844 (Q39844) Small GTP-binding prote... 157 3e-39
TC207438 homologue to UP|Q08145 (Q08145) GTP-binding protein, pa... 156 8e-39
TC216386 homologue to UP|RB1C_ARATH (O04486) Ras-related protein... 155 2e-38
>TC203376 homologue to UP|Q41023 (Q41023) Small GTP-binding protein, complete
Length = 1011
Score = 360 bits (925), Expect = e-100
Identities = 183/198 (92%), Positives = 189/198 (95%), Gaps = 1/198 (0%)
Frame = +2
Query: 17 ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
+LL+ +GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD KRIKLQIWDTAGQERF
Sbjct: 161 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDSKRIKLQIWDTAGQERF 340
Query: 77 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR
Sbjct: 341 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 520
Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDNKAEPTTIKINQ 196
AVPTSKGQALADEYGIKFFETSAKTN+NVEEVFFSIARDIKQRLADTD++AEP TIKINQ
Sbjct: 521 AVPTSKGQALADEYGIKFFETSAKTNMNVEEVFFSIARDIKQRLADTDSRAEPQTIKINQ 700
Query: 197 -DSATGSGQAAQKSACCG 213
D AT GQ AQKSACCG
Sbjct: 701 PDQATSGGQPAQKSACCG 754
>TC215024 homologue to GB|BAB08351.1|9757904|AB015475 Rab-type small
GTP-binding protein-like {Arabidopsis thaliana;} ,
partial (87%)
Length = 895
Score = 360 bits (925), Expect = e-100
Identities = 180/188 (95%), Positives = 184/188 (97%)
Frame = +2
Query: 26 GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 85
GKSCL RFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR
Sbjct: 44 GKSCLXXRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR 223
Query: 86 GAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQA 145
GAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQA
Sbjct: 224 GAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQA 403
Query: 146 LADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDNKAEPTTIKINQDSATGSGQA 205
LADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTD+KAEP+TIKINQD + G+GQA
Sbjct: 404 LADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEPSTIKINQDQSGGAGQA 583
Query: 206 AQKSACCG 213
AQKSACCG
Sbjct: 584 AQKSACCG 607
>TC203292 homologue to UP|Q8W3J4 (Q8W3J4) Ras-related protein RAB8-1,
complete
Length = 1129
Score = 359 bits (921), Expect = e-100
Identities = 183/198 (92%), Positives = 188/198 (94%), Gaps = 1/198 (0%)
Frame = +1
Query: 17 ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
+LL+ +GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF
Sbjct: 196 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 375
Query: 77 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR
Sbjct: 376 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 555
Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDNKAEPTTIKINQ 196
AVPTSKGQALADEYGIKFFETSAKTN+NVEEVFFSIARDIKQRLADTD+KAEP TIKINQ
Sbjct: 556 AVPTSKGQALADEYGIKFFETSAKTNMNVEEVFFSIARDIKQRLADTDSKAEPQTIKINQ 735
Query: 197 -DSATGSGQAAQKSACCG 213
D G AAQKSACCG
Sbjct: 736 PDQTATGGLAAQKSACCG 789
>TC215026 homologue to UP|Q40219 (Q40219) RAB8E, partial (92%)
Length = 1071
Score = 349 bits (896), Expect = 5e-97
Identities = 179/199 (89%), Positives = 187/199 (93%), Gaps = 2/199 (1%)
Frame = +2
Query: 17 ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
+LL+ +GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIE DGKRIKLQIWDTAGQERF
Sbjct: 200 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEQDGKRIKLQIWDTAGQERF 379
Query: 77 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
RTITTAYYRGAMGILLVYDVTDE+SFNNIRNWIRNIEQHASDNVNK+LVGNKADMDESKR
Sbjct: 380 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 559
Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDNKAEPTTIKINQ 196
VPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTD+KAEP IKIN
Sbjct: 560 VVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEPAGIKINN 739
Query: 197 --DSATGSGQAAQKSACCG 213
D AT +G+ AQKSACCG
Sbjct: 740 QLDHAT-AGEVAQKSACCG 793
>TC215025 homologue to GB|BAB08351.1|9757904|AB015475 Rab-type small
GTP-binding protein-like {Arabidopsis thaliana;} ,
partial (71%)
Length = 903
Score = 233 bits (594), Expect = 5e-62
Identities = 129/167 (77%), Positives = 137/167 (81%)
Frame = +1
Query: 17 ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
+LL+ +GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF
Sbjct: 355 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 534
Query: 77 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
RTITTAYYRGAMGILLVYD TDEASFNNIRNWIRNIEQHASDNVNKIL G K ++K
Sbjct: 535 RTITTAYYRGAMGILLVYDGTDEASFNNIRNWIRNIEQHASDNVNKILGGTKLIWMKAK- 711
Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADT 183
AVPTSK + IKFFET A+ EVFFS AR + QRL T
Sbjct: 712 AVPTSKASPGWMGW-IKFFETRARQI*TWREVFFSKARKLNQRLG*T 849
Score = 31.2 bits (69), Expect = 0.37
Identities = 27/78 (34%), Positives = 39/78 (49%)
Frame = +3
Query: 126 GNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDN 185
G+KADMDESK +GQ D + KTNLNVE F +++IK + N
Sbjct: 681 GDKADMDESKGRAYV-QGQPWLDGMD-QIL*N*GKTNLNVEGGFLFKSKEIKPKAG--LN 848
Query: 186 KAEPTTIKINQDSATGSG 203
A ++ ++ + TG G
Sbjct: 849 LAPRGDLQHSKSTRTGGG 902
>TC227973 UP|Q39845 (Q39845) Small GTP-binding protein, complete
Length = 932
Score = 229 bits (584), Expect = 7e-61
Identities = 119/198 (60%), Positives = 147/198 (74%), Gaps = 2/198 (1%)
Frame = +1
Query: 17 ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
+LL+ +GVGKSCLLLRFSD S+ S+I+TIG+DFKIRT+E DGK IKLQIWDTAGQERF
Sbjct: 172 LLLIGDSGVGKSCLLLRFSDDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 351
Query: 77 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
RTIT++YYRGA GI++VYDVTDE SFNN++ W+ I+++ASDNVNK+LVGNK D+ E+ R
Sbjct: 352 RTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKCDL-EANR 528
Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTD-NKAEPTTIKIN 195
AV +A ADE GI F ETSAK NVE+ F ++A IK R+A N A P T++I
Sbjct: 529 AVSYETAKAFADEIGIPFMETSAKDATNVEQAFMAMAASIKDRMASQPANNARPPTVQIR 708
Query: 196 QDSATGSGQ-AAQKSACC 212
GQ AQK CC
Sbjct: 709 -------GQPVAQKGGCC 741
>TC225644 UP|Q40203 (Q40203) RAB1C, complete
Length = 1161
Score = 221 bits (562), Expect = 2e-58
Identities = 111/197 (56%), Positives = 144/197 (72%), Gaps = 1/197 (0%)
Frame = +1
Query: 17 ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
+LL+ +GVGKSCLLLRF+D S+ S+I+TIG+DFKIRT+E DGK IKLQIWDTAGQERF
Sbjct: 205 LLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 384
Query: 77 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
RTIT++YYRGA GI++VYDVTD+ SFNN++ W+ I+++AS+NVNK+LVGNK D+ +K
Sbjct: 385 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANK- 561
Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTD-NKAEPTTIKIN 195
V +A ADE GI F ETSAK NVE+ F ++A +IK R+A N A P T++I
Sbjct: 562 VVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRMASQPVNNARPPTVQIR 741
Query: 196 QDSATGSGQAAQKSACC 212
QK+ CC
Sbjct: 742 GQPVN------QKAGCC 774
>TC206346 homologue to UP|Q08154 (Q08154) GTP-binding protein, complete
Length = 1106
Score = 219 bits (558), Expect = 7e-58
Identities = 113/199 (56%), Positives = 146/199 (72%), Gaps = 3/199 (1%)
Frame = +1
Query: 17 ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
+LL+ +GVGKSCLLLRF+D S+ S+I+TIG+DFKIRT+E DGK IKLQIWDTAGQERF
Sbjct: 163 LLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 342
Query: 77 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
RTIT++YYRGA GI++VYDVTDE SFNN++ W+ I+++ASDNVNK+LVGNK+D+ + R
Sbjct: 343 RTITSSYYRGAHGIIIVYDVTDEDSFNNVKQWLSEIDRYASDNVNKLLVGNKSDL-TANR 519
Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDNKAEPTTIKI 194
V + AD+ GI F ETSAK NVE+ F +++ IK R+A + N A P T++I
Sbjct: 520 VVSYDTAKEFADQIGIPFMETSAKDATNVEDAFMAMSAAIKNRMASQPSANNARPPTVQI 699
Query: 195 NQDSATGSGQ-AAQKSACC 212
GQ QKS CC
Sbjct: 700 R-------GQPVGQKSGCC 735
>TC221792 UP|Q39861 (Q39861) GTP binding protein, complete
Length = 1005
Score = 213 bits (541), Expect = 7e-56
Identities = 117/213 (54%), Positives = 146/213 (67%), Gaps = 17/213 (7%)
Frame = +1
Query: 17 ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
+LL+ +GVGKSCLLLRFSD S+ S+I+TIG+DFKIRT+E DGK IKLQIWDTAGQERF
Sbjct: 157 LLLIGDSGVGKSCLLLRFSDDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERF 336
Query: 77 RTITTAYYRGAMGILLVYDVTD-EASFNNIRNWIRNIEQHASDNVNKILVGNKADMD--- 132
RTIT++YYRGA GI++VYDVTD E SFNN++ W+ I+++ASDNVNK+LVGNK D++
Sbjct: 337 RTITSSYYRGAHGIIIVYDVTDGEESFNNVKQWLSEIDRYASDNVNKLLVGNKCDLEANR 516
Query: 133 ----------ESKRAVPT-SKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA 181
E+ RAV +A AD GI F ETSAK NVE+ F ++ IK R+A
Sbjct: 517 AVSNIETADLEANRAVSNIETAKAFADGIGIPFMETSAKDATNVEQAFMAMTASIKDRMA 696
Query: 182 DTD-NKAEPTTIKINQDSATGSGQ-AAQKSACC 212
N A P T++I GQ AQK CC
Sbjct: 697 SQPANNARPPTVQIR-------GQPVAQKGGCC 774
>TC216317 UP|Q43462 (Q43462) Rab7p protein, complete
Length = 1090
Score = 211 bits (536), Expect = 3e-55
Identities = 106/198 (53%), Positives = 147/198 (73%), Gaps = 1/198 (0%)
Frame = +3
Query: 17 ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
+LL+ + VGKSCLLLRF+D S+ S+I+TIG+DFKIRT+EL+GK +KLQIWDTAGQERF
Sbjct: 66 LLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELEGKTVKLQIWDTAGQERF 245
Query: 77 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
RTIT++YYRGA GI++VYDVT+ SFNN++ W+ I+++A+D V K+LVGNK+D+ ++K
Sbjct: 246 RTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDTVCKLLVGNKSDLVDNK- 422
Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDNKAEPTTIKINQ 196
V + +A ADE GI F ETSAK ++NVE+ F ++A +IK+++ TT +
Sbjct: 423 VVDSLTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKKKM------GSQTTTGKSA 584
Query: 197 DSATGSGQ-AAQKSACCG 213
+S GQ QKS CCG
Sbjct: 585 ESVQMKGQPIPQKSNCCG 638
>TC203411 UP|Q41023 (Q41023) Small GTP-binding protein, partial (59%)
Length = 538
Score = 209 bits (532), Expect = 8e-55
Identities = 104/109 (95%), Positives = 107/109 (97%)
Frame = +3
Query: 17 ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
+LL+ +GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF
Sbjct: 210 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 389
Query: 77 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILV 125
RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILV
Sbjct: 390 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILV 536
>TC216318 homologue to UP|Q43462 (Q43462) Rab7p protein, complete
Length = 860
Score = 208 bits (530), Expect = 1e-54
Identities = 104/198 (52%), Positives = 147/198 (73%), Gaps = 1/198 (0%)
Frame = +3
Query: 17 ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
+LL+ + VGKSCLLLRF+D S+ S+I+TIG+DFKIRT+EL+GK +KLQIWDTAGQERF
Sbjct: 111 LLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELEGKTVKLQIWDTAGQERF 290
Query: 77 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
RTIT++YYRGA GI++VYDVT+ SFNN++ W+ I+++A+D+V K+LVGNK+D+ ++K
Sbjct: 291 RTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKSDLVDNK- 467
Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDNKAEPTTIKINQ 196
V + +A ADE GI F ETSAK ++NVE+ F ++ +IK+++ TT +
Sbjct: 468 VVDSLTAKAFADELGIPFLETSAKDSINVEQAFLTMTAEIKKKM------GSQTTAGKSA 629
Query: 197 DSATGSGQ-AAQKSACCG 213
++ GQ QKS CCG
Sbjct: 630 ETVQMKGQPIPQKSNCCG 683
>TC205442 UP|Q40208 (Q40208) RAB2A, complete
Length = 1159
Score = 169 bits (427), Expect = 1e-42
Identities = 91/196 (46%), Positives = 120/196 (60%), Gaps = 7/196 (3%)
Frame = +2
Query: 24 GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 83
GVGKSCLLL+F+D F TIG++F R I +D K IKLQIWDTAGQE FR+IT +Y
Sbjct: 143 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSY 322
Query: 84 YRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKG 143
YRGA G LLVYD+T +FN++ +W+ + QHA+ N+ +L+GNK D+ +RAV T +G
Sbjct: 323 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL-AHRRAVSTEEG 499
Query: 144 QALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDNKAEPTTIKINQDSATG 201
+ A E+G+ F E SAKT NVEE F A I +++ D D E IK+ G
Sbjct: 500 EQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKVGYGGIPG 679
Query: 202 -----SGQAAQKSACC 212
G +A CC
Sbjct: 680 PSGGRDGPSASAGGCC 727
>TC206349 UP|P92963 (P92963) Rab2-like protein (GTP-binding RAB2A like
protein) (At4g17170), partial (90%)
Length = 728
Score = 164 bits (416), Expect = 2e-41
Identities = 82/159 (51%), Positives = 109/159 (67%)
Frame = +1
Query: 24 GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 83
GVGKSCLLL+F+D F TIG++F R I +D K IKLQIWDTAGQE FR+IT +Y
Sbjct: 205 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSY 384
Query: 84 YRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKG 143
YRGA G LLVYD+T +FN++ +W+ + QHA+ N+ +L+GNK D+ +RAV T +G
Sbjct: 385 YRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL-AHRRAVSTEEG 561
Query: 144 QALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD 182
+ A E+G+ F E SAKT NVEE F A I +++ D
Sbjct: 562 EQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 678
>TC218982 homologue to UP|Q38922 (Q38922) ATGB2 (GTP-binding protein GB2),
complete
Length = 939
Score = 161 bits (408), Expect = 2e-40
Identities = 87/198 (43%), Positives = 120/198 (59%), Gaps = 9/198 (4%)
Frame = +3
Query: 24 GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 83
GVGKSCLLL+F+D F TIG++F R + +D + IKLQIWDTAGQE FR+IT +Y
Sbjct: 174 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDSRPIKLQIWDTAGQESFRSITRSY 353
Query: 84 YRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKG 143
YRGA G LLVYD+T +FN++ +W+ + QHA+ N+ +L+GNK D+ +RAV +G
Sbjct: 354 YRGAAGALLVYDITRRDTFNHLASWLEDARQHANPNMTIMLIGNKCDLSH-RRAVSKEEG 530
Query: 144 QALADEYGIKFFETSAKTNLNVEEVFF----SIARDIKQRLADTDNKAEPTTIKINQ--- 196
+ A E G+ F E SA+T NVEE F I ++IK+ + D N E IK+
Sbjct: 531 EQFAKENGLLFLEASARTAQNVEEAFIRTAGKILQNIKEGVFDVSN--ESFGIKVGYGRP 704
Query: 197 --DSATGSGQAAQKSACC 212
S G + + CC
Sbjct: 705 QGQSGARDGTVSARGGCC 758
>TC214158 homologue to UP|R11C_LOTJA (Q40193) Ras-related protein Rab11C,
complete
Length = 1243
Score = 160 bits (405), Expect = 4e-40
Identities = 86/201 (42%), Positives = 124/201 (60%), Gaps = 5/201 (2%)
Frame = +3
Query: 17 ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
I+L+ +GVGKS +L RF+ F +TIG++F RT++++GK +K QIWDTAGQER+
Sbjct: 282 IVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERY 461
Query: 77 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
R IT+AYYRGA+G LLVYD+T +F+N++ W+R + HA N+ ++ GNK+D+ R
Sbjct: 462 RAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLSH-LR 638
Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARD---IKQRLADTDNKAEPTTIK 193
AV GQALA+ G+ F ETSA N+E+ F +I + I + A +A TI
Sbjct: 639 AVSEDDGQALAEREGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEAAVGTIL 818
Query: 194 INQDSATGSGQAA--QKSACC 212
Q + G A+ K CC
Sbjct: 819 PGQGTTINVGDASGNTKRGCC 881
>TC214200 homologue to UP|R11C_LOTJA (Q40193) Ras-related protein Rab11C,
complete
Length = 1240
Score = 159 bits (403), Expect = 7e-40
Identities = 84/201 (41%), Positives = 120/201 (58%), Gaps = 5/201 (2%)
Frame = +3
Query: 17 ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
I+L+ +GVGKS +L RF+ F +TIG++F RT++++GK +K QIWDTAGQER+
Sbjct: 303 IVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERY 482
Query: 77 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
R IT+AYYRGA+G LLVYD+T +F+N++ W+R + HA N+ ++ GNK+D+ R
Sbjct: 483 RAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLSH-LR 659
Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI-----KQRLADTDNKAEPTT 191
AV GQALA+ G+ F ETSA N+E+ F +I +I K+ LA + T
Sbjct: 660 AVSEDDGQALAEREGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEAAVGTTL 839
Query: 192 IKINQDSATGSGQAAQKSACC 212
G K CC
Sbjct: 840 PGQGTTINVGDASGNTKRGCC 902
>TC206925 homologue to UP|Q39844 (Q39844) Small GTP-binding protein
(Fragment), partial (95%)
Length = 1111
Score = 157 bits (398), Expect = 3e-39
Identities = 82/204 (40%), Positives = 125/204 (61%), Gaps = 8/204 (3%)
Frame = +1
Query: 17 ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
++L+ + VGKS +L RF+ F+ TIG++F+ RT+ + K IK QIWDTAGQER+
Sbjct: 310 VVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSIKAQIWDTAGQERY 489
Query: 77 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
R +T+AYYRGA+G +LVYD+T SF++I W+ + HA N+ IL+GNK+D+ E++R
Sbjct: 490 RAVTSAYYRGAVGAMLVYDITKRQSFDHIPRWLEELRNHADKNIVIILIGNKSDL-ENQR 666
Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI-----KQRLADTDNKAEPTT 191
VPT + A++ G+ F ETSA NVE F ++ +I K+ LA +DN+ +
Sbjct: 667 QVPTEDAKEFAEKEGLFFLETSALEATNVETAFMTVLTEIFNIINKKNLAASDNQGNDNS 846
Query: 192 IKINQDSATGSGQAAQ---KSACC 212
++ G A + +S CC
Sbjct: 847 ASLSGKKIIVPGPAQEIPKRSMCC 918
>TC207438 homologue to UP|Q08145 (Q08145) GTP-binding protein, partial (95%)
Length = 853
Score = 156 bits (394), Expect = 8e-39
Identities = 83/201 (41%), Positives = 131/201 (64%), Gaps = 5/201 (2%)
Frame = +2
Query: 17 ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
I+L+ + VGKS LL RF+ F ++ TIG++F+ + +E+DGK IK QIWDTAGQERF
Sbjct: 158 IVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQLVEIDGKEIKAQIWDTAGQERF 337
Query: 77 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
R +T+AYYRGA+G L+VYD++ +F++I+ W++ + V ++LVGNK D+ E+ R
Sbjct: 338 RAVTSAYYRGAVGALVVYDISRRGTFDSIKRWLQELTTQNDSTVARMLVGNKCDL-ENIR 514
Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARD----IKQRLADTDN-KAEPTT 191
V T +G++LA+E G+ F ETSA NV+ F + R+ I +++ ++D+ KAE
Sbjct: 515 EVSTEEGKSLAEEEGLFFMETSALDATNVQTAFEIVIREIYNNISRKVLNSDSYKAE--- 685
Query: 192 IKINQDSATGSGQAAQKSACC 212
+ +N+ S + Q +CC
Sbjct: 686 LSVNRVSLVNGAGSKQGPSCC 748
>TC216386 homologue to UP|RB1C_ARATH (O04486) Ras-related protein Rab11C,
partial (85%)
Length = 967
Score = 155 bits (391), Expect = 2e-38
Identities = 85/203 (41%), Positives = 121/203 (58%), Gaps = 7/203 (3%)
Frame = +2
Query: 17 ILLLFFAGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 76
++L+ +GVGKS LL RF+ F +TIG++F RT++++G+ +K QIWDTAGQER+
Sbjct: 221 VVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERY 400
Query: 77 RTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKR 136
R IT+AYYRGA+G LLVYDVT +F N+ W++ + HA N+ +L+GNK D+ + R
Sbjct: 401 RAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADANIVIMLIGNKTDL-KHLR 577
Query: 137 AVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI-----KQRLADTDNKAEPTT 191
AV T Q A++ G+ F ETSA NVE F +I +I K+ L+ D A
Sbjct: 578 AVATEDAQGYAEKEGLSFIETSALEATNVENAFQTILAEIYRIISKKSLSSNDPAA--NI 751
Query: 192 IKINQDSATGSGQA--AQKSACC 212
IK + G K +CC
Sbjct: 752 IKEGKTITVGGAPEPNTNKPSCC 820
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.321 0.136 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,081,163
Number of Sequences: 63676
Number of extensions: 88956
Number of successful extensions: 745
Number of sequences better than 10.0: 177
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of query: 213
length of database: 12,639,632
effective HSP length: 93
effective length of query: 120
effective length of database: 6,717,764
effective search space: 806131680
effective search space used: 806131680
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Medicago: description of AC139841.10