BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139748.7 + phase: 0 /pseudo
(144 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BM187569 34 0.021
TC211018 weakly similar to UP|KSS1_YEAST (P14681) Mitogen-activa... 32 0.080
TC206928 similar to UP|Q9LNC6 (Q9LNC6) F9P14.7 protein (At1g0621... 30 0.40
TC230763 30 0.52
CD487721 GP|4689382|gb| chlorophyll a/b binding protein CP29 {Vi... 28 1.2
TC234600 similar to UP|Q8LFQ7 (Q8LFQ7) Protein phosphatase 2C-li... 28 1.5
TC208449 homologue to UP|BCCP_SOYBN (Q42783) Biotin carboxyl car... 28 1.5
TC203349 similar to UP|RL31_NICGU (P46290) 60S ribosomal protein... 28 1.5
TC215057 similar to UP|Q9SJM6 (Q9SJM6) Expressed protein (Zinc f... 28 1.5
TC214631 weakly similar to GB|AAL31248.1|16974489|AY061921 At2g2... 28 2.0
TC216311 UP|Q7XA52 (Q7XA52) Monosaccharide transporter, complete 27 2.6
TC214664 weakly similar to GB|AAL31248.1|16974489|AY061921 At2g2... 27 2.6
BU965053 similar to SP|Q9FPQ6|GP1_C Vegetative cell wall protein... 27 3.4
BQ612873 27 3.4
TC234849 similar to UP|Q9C583 (Q9C583) Somatic embryogenesis rec... 27 3.4
TC230893 similar to GB|AAB60858.1|1839240|ATU86663 aVps41p {Arab... 27 3.4
BE661161 27 4.4
TC213917 similar to UP|Q9M1V5 (Q9M1V5) Heat shock transcription ... 27 4.4
TC217948 similar to UP|Q8LDQ9 (Q8LDQ9) VirE2-interacting protein... 27 4.4
TC208867 similar to UP|Q9LXT2 (Q9LXT2) Serine/threonine-specific... 27 4.4
>BM187569
Length = 437
Score = 34.3 bits (77), Expect = 0.021
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 46 HERRRPR-WWTRPRVPLSCASGIKFREKQQRNEPRHRCGQSSNICI*QSL 94
+++ RP WW R R+ L CA ++F + + HR +S+N+ + Q+L
Sbjct: 52 NDQTRPLDWWARMRIALDCARALEFLHEHAVSPVIHRDFKSNNVLLDQNL 201
>TC211018 weakly similar to UP|KSS1_YEAST (P14681) Mitogen-activated protein
kinase KSS1 (MAP kinase KSS1) (Kinase suppressor of
SST2) , partial (7%)
Length = 786
Score = 32.3 bits (72), Expect = 0.080
Identities = 13/41 (31%), Positives = 23/41 (55%)
Frame = +2
Query: 53 WWTRPRVPLSCASGIKFREKQQRNEPRHRCGQSSNICI*QS 93
WW R R+ L CA ++F + + HR +S+N+ + Q+
Sbjct: 362 WWARMRIALDCARALEFLHEHAVSPVIHRDFKSNNVLLDQN 484
>TC206928 similar to UP|Q9LNC6 (Q9LNC6) F9P14.7 protein (At1g06210/F9P14_4),
partial (58%)
Length = 1459
Score = 30.0 bits (66), Expect = 0.40
Identities = 12/16 (75%), Positives = 12/16 (75%), Gaps = 2/16 (12%)
Frame = +2
Query: 45 CHERRR--PRWWTRPR 58
C RRR PRWWTRPR
Sbjct: 146 CFRRRRRSPRWWTRPR 193
>TC230763
Length = 1058
Score = 29.6 bits (65), Expect = 0.52
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 39 VRYRSPCHERRRPRWWTRPRVPLSCASGIKFREKQQR 75
VR S CH + P W + PR P S + R+++ R
Sbjct: 244 VRVCSDCHTTKTPLWRSGPRGPKSLCNACGIRQRKAR 354
>CD487721 GP|4689382|gb| chlorophyll a/b binding protein CP29 {Vigna
radiata}, partial (16%)
Length = 638
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = -3
Query: 37 VKVRYRSPCHERRRPRWWTR---PRVPLSCASGIKFREKQQRNEP 78
+++ +R+P H RR PR R PR P A + + ++QRN P
Sbjct: 558 LQLAHRNPLHSRRFPRHRRRRPLPRFPSRGAEILHRKHRRQRN*P 424
>TC234600 similar to UP|Q8LFQ7 (Q8LFQ7) Protein phosphatase 2C-like, partial
(22%)
Length = 515
Score = 28.1 bits (61), Expect = 1.5
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 32 RKL*RVKVRYRSPCHERRRPRWWTRPRVPLSCA 64
R++ R V +R P R R RWWTR R C+
Sbjct: 414 RRIRRTSV-FRGPSPTRARRRWWTRHRHHHPCS 319
>TC208449 homologue to UP|BCCP_SOYBN (Q42783) Biotin carboxyl carrier
protein of acetyl-CoA carboxylase, chloroplast
precursor (BCCP) , complete
Length = 1099
Score = 28.1 bits (61), Expect = 1.5
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 43 SPCHERRRPRWWTRPRVPLSCAS 65
S C E PRW P+ PL CAS
Sbjct: 30 SLCFETWHPRWHQLPKPPLICAS 98
>TC203349 similar to UP|RL31_NICGU (P46290) 60S ribosomal protein L31,
partial (98%)
Length = 573
Score = 28.1 bits (61), Expect = 1.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 38 KVRYRSPCHERRRPRWWTRPRV 59
+VR R P + R+ +WW RPRV
Sbjct: 5 RVRLRFPNRKVRK*QWWRRPRV 70
>TC215057 similar to UP|Q9SJM6 (Q9SJM6) Expressed protein (Zinc finger-like
protein), partial (63%)
Length = 973
Score = 28.1 bits (61), Expect = 1.5
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
Frame = +2
Query: 47 ERRRPRWWTRPRVPLSCA-SGIKFREKQQRNEPRHRCGQSS----------NICI*QSLW 95
ERRR R W V +SCA GI+ + ++ + RHR + IC S
Sbjct: 161 ERRRKRIWNFRFVGVSCACGGIEGKIWRKNTDARHRASAPTIAVSLAALPRRICA-PSAT 337
Query: 96 LIGKS*SNNFTHSRW 110
I S S+N RW
Sbjct: 338 AISSSRSSNLPTPRW 382
>TC214631 weakly similar to GB|AAL31248.1|16974489|AY061921
At2g27080/T20P8.13 {Arabidopsis thaliana;} , partial
(22%)
Length = 1068
Score = 27.7 bits (60), Expect = 2.0
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +2
Query: 41 YRSPCHERRRPRWWTR---PRVPLSCASGIKFREKQQRNEP 78
+R+P H RR PR R PR P A + + ++QRN P
Sbjct: 98 HRNPLHSRRFPRHRRRRPLPRFPSRGAEILHRKHRRQRN*P 220
>TC216311 UP|Q7XA52 (Q7XA52) Monosaccharide transporter, complete
Length = 1925
Score = 27.3 bits (59), Expect = 2.6
Identities = 23/76 (30%), Positives = 28/76 (36%), Gaps = 11/76 (14%)
Frame = -2
Query: 45 CHERRRPRWWTRPRVPLSCASGIK-----FREKQQR------NEPRHRCGQSSNICI*QS 93
CH PR WTR VP A ++ FR ++ R R R G S C
Sbjct: 1621 CHNHHAPRIWTRRGVPAKPAPFLQLECPLFRARRSRRRMS*STRRRQRRGTSRTSC---- 1454
Query: 94 LWLIGKS*SNNFTHSR 109
GK+ S SR
Sbjct: 1453 ----GKALSRRLVQSR 1418
>TC214664 weakly similar to GB|AAL31248.1|16974489|AY061921
At2g27080/T20P8.13 {Arabidopsis thaliana;} , partial
(56%)
Length = 1097
Score = 27.3 bits (59), Expect = 2.6
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +2
Query: 41 YRSPCHERRRPRWWTR---PRVPLSCASGIKFREKQQRNEP 78
+R+P H RR PR R PR P A + + +QRN P
Sbjct: 347 HRNPLHSRRAPRHRRRRPLPRFPSRGAEILHRKHHRQRN*P 469
>BU965053 similar to SP|Q9FPQ6|GP1_C Vegetative cell wall protein gp1
precursor (Hydroxyproline-rich glycoprotein 1)., partial
(3%)
Length = 450
Score = 26.9 bits (58), Expect = 3.4
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +2
Query: 45 CHERRRPRWWTR 56
C ERRR RWW R
Sbjct: 134 CRERRRRRWWRR 169
>BQ612873
Length = 416
Score = 26.9 bits (58), Expect = 3.4
Identities = 14/47 (29%), Positives = 24/47 (50%), Gaps = 2/47 (4%)
Frame = +2
Query: 46 HERRRPR--WWTRPRVPLSCASGIKFREKQQRNEPRHRCGQSSNICI 90
H+ + P W TR ++ + A G+ + K + HR +SSNI +
Sbjct: 26 HDEKLPPLDWKTRHKIAIGTARGLHYLHKDCKRRIIHRDIKSSNILL 166
>TC234849 similar to UP|Q9C583 (Q9C583) Somatic embryogenesis receptor-like
kinase-like protein, partial (21%)
Length = 688
Score = 26.9 bits (58), Expect = 3.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 43 SPCHERRRPRWWTRPRVPLSCASGI 67
SP RRR R W R + P +C G+
Sbjct: 257 SPNKRRRRLRTWQRTQKPRNCCKGL 183
>TC230893 similar to GB|AAB60858.1|1839240|ATU86663 aVps41p {Arabidopsis
thaliana;} , partial (42%)
Length = 459
Score = 26.9 bits (58), Expect = 3.4
Identities = 15/37 (40%), Positives = 23/37 (61%), Gaps = 1/37 (2%)
Frame = +3
Query: 98 GKS*SNN-FTHSRW*SQRLSWSYLWSSTKSLVIWRTL 133
GK+*S+N FT+ +W W+Y WS+ ++I TL
Sbjct: 123 GKN*SSNAFTNLKW------WAYYWSTQLEILIPFTL 215
>BE661161
Length = 718
Score = 26.6 bits (57), Expect = 4.4
Identities = 11/16 (68%), Positives = 11/16 (68%), Gaps = 2/16 (12%)
Frame = +3
Query: 45 CHERRRP--RWWTRPR 58
C RRR RWWTRPR
Sbjct: 180 CFRRRRRSRRWWTRPR 227
>TC213917 similar to UP|Q9M1V5 (Q9M1V5) Heat shock transcription factor-like
protein, partial (10%)
Length = 687
Score = 26.6 bits (57), Expect = 4.4
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 78 PRHRCGQSSNICI*QSLWLIG-KS*SNNFTHSRW 110
PR RC C+ QSLWL+G KS* N T W
Sbjct: 259 PR*RCQ-----CVGQSLWLLGFKS*MNEPTTYYW 345
>TC217948 similar to UP|Q8LDQ9 (Q8LDQ9) VirE2-interacting protein VIP1,
partial (43%)
Length = 1386
Score = 26.6 bits (57), Expect = 4.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 40 RYRSPCHERRRPRWWTRPRVPLSCAS 65
R RS CH R P W+ P P S A+
Sbjct: 342 RRRSLCHLRSPPAWFRCPSTPTSPAN 419
>TC208867 similar to UP|Q9LXT2 (Q9LXT2) Serine/threonine-specific protein
kinase-like protein, partial (72%)
Length = 1118
Score = 26.6 bits (57), Expect = 4.4
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 53 WWTRPRVPLSCASGIKFREKQQRNEPRHRCGQSSNICI 90
W TR R+ L A G+++ + HR +SSNI +
Sbjct: 298 WETRLRIALEAAKGLEYLHEHVSPPVIHRDFKSSNILL 411
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.350 0.149 0.585
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,290,780
Number of Sequences: 63676
Number of extensions: 169318
Number of successful extensions: 2098
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 2074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2094
length of query: 144
length of database: 12,639,632
effective HSP length: 88
effective length of query: 56
effective length of database: 7,036,144
effective search space: 394024064
effective search space used: 394024064
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 54 (25.4 bits)
Medicago: description of AC139748.7