TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139748.4 + phase: 0 /pseudo
         (36 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BQ742132 weakly similar to GP|28416671|gb| At5g41980 {Arabidopsi...    39  5e-04
TC212187 weakly similar to UP|Q6USA0 (Q6USA0) Transposase (Fragm...    32  0.099
TC231143                                                               28  0.84
TC224534 similar to UP|Q6USA0 (Q6USA0) Transposase (Fragment), p...    27  3.2

>BQ742132 weakly similar to GP|28416671|gb| At5g41980 {Arabidopsis thaliana},
           partial (25%)
          Length = 429

 Score = 39.3 bits (90), Expect = 5e-04
 Identities = 14/27 (51%), Positives = 21/27 (76%)
 Frame = +3

Query: 1   MELPNRIKNNPKYYPWFKNCIGAIDGL 27
           ++ P  I NN ++YP+FK+CIG IDG+
Sbjct: 291 LKTPPEILNNARFYPYFKDCIGVIDGM 371


>TC212187 weakly similar to UP|Q6USA0 (Q6USA0) Transposase (Fragment),
           partial (45%)
          Length = 973

 Score = 31.6 bits (70), Expect = 0.099
 Identities = 12/26 (46%), Positives = 19/26 (72%)
 Frame = +2

Query: 5   NRIKNNPKYYPWFKNCIGAIDGLLLR 30
           + I  + +Y P+F++CIGAIDG  +R
Sbjct: 155 DEILKDARYRPYFRDCIGAIDGTHIR 232


>TC231143 
          Length = 941

 Score = 28.5 bits (62), Expect = 0.84
 Identities = 11/21 (52%), Positives = 16/21 (75%)
 Frame = +3

Query: 6   RIKNNPKYYPWFKNCIGAIDG 26
           +I+N+  Y+P+FKN IG  DG
Sbjct: 798 KIENDTWYWPFFKNVIGTNDG 860


>TC224534 similar to UP|Q6USA0 (Q6USA0) Transposase (Fragment), partial (50%)
          Length = 968

 Score = 26.6 bits (57), Expect = 3.2
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +1

Query: 16  WFKNCIGAIDGL 27
           WFKN IGA+DG+
Sbjct: 241 WFKNSIGALDGI 276


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.324    0.146    0.491 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,312,405
Number of Sequences: 63676
Number of extensions: 19137
Number of successful extensions: 94
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of query: 36
length of database: 12,639,632
effective HSP length: 12
effective length of query: 24
effective length of database: 11,875,520
effective search space: 285012480
effective search space used: 285012480
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)