BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139747.4 + phase: 0
(500 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC232867 similar to UP|Q9MA68 (Q9MA68) F2J6.13 protein, partial ... 145 5e-35
TC231258 similar to UP|Q886T6 (Q886T6) Sensory box histidine kin... 123 2e-28
TC222094 84 4e-28
CF922341 35 0.10
TC228370 similar to UP|Q9AXD7 (Q9AXD7) Response regulator protei... 33 0.23
TC228371 similar to UP|Q9AXD7 (Q9AXD7) Response regulator protei... 32 0.51
BQ133845 32 0.86
TC234879 similar to UP|O64805 (O64805) T1F15.13 protein (Fragmen... 30 3.3
TC205298 weakly similar to GB|CAE04608.2|32489693|OSJN00193 OSJN... 30 3.3
TC207684 weakly similar to UP|Q8YXK7 (Q8YXK7) All1205 protein, p... 29 5.6
CO982510 28 7.3
TC229792 UP|C824_SOYBN (O49859) Cytochrome P450 82A4 (P450 CP9)... 28 9.5
TC227422 similar to UP|P92973 (P92973) CCA1 (MYB-related transcr... 28 9.5
TC231008 similar to UP|Q71BZ4 (Q71BZ4) Type-A response regulator... 28 9.5
>TC232867 similar to UP|Q9MA68 (Q9MA68) F2J6.13 protein, partial (3%)
Length = 1144
Score = 145 bits (365), Expect = 5e-35
Identities = 91/276 (32%), Positives = 148/276 (52%), Gaps = 5/276 (1%)
Frame = -3
Query: 6 ALKEYAITSSDESYDAIVYPTVEGSKFEIKPALIYLVQQNQFFGSPTEDPNLHVSIFLRL 65
AL++Y+ ++ + + +I P V+ P+LI L+Q N F G P EDP H++ ++ +
Sbjct: 905 ALEDYSSSTVPQFFTSIAQPEVQAQTITYPPSLIQLIQSNFFHGLPNEDPYAHLATYIEI 726
Query: 66 SGTLK---ANQEAVRLHLFPFSLRDRASAWFHSLQIGSITSWNQMRKAFLSQFFPHSKTA 122
T++ +A+RL L FSL A W HS + S+ SW+++ + FL ++FP SKTA
Sbjct: 725 CNTIRLAGVPADAIRLSLLSFSLSGEAKRWLHSFKGNSLKSWDEVVEKFLKKYFPESKTA 546
Query: 123 QLRSQITQFTQKDGESLYDAWERFKKMLRLCPHHGFENWLIIHTFYNGLLFSTKMNVDAA 182
+ ++ I+ F Q ESL +A ERF+ +LR P HGF + ++ F + L +K VDA+
Sbjct: 545 EGKAAISSFHQFPDESLSEALERFRGLLRKTPTHGFSEPIQLNIFIDELRPESKQLVDAS 366
Query: 183 AGGALMNKTFTGAYDLIEDMAQNHYQWTSERVIADVTPPPSKKEAGMYQVSTLDHLSTKV 242
GG + KT A DLIE MA + ++ D P+KK + ++++ D L +
Sbjct: 365 VGGKIKMKTPDEAMDLIESMAASDI-----AILRDRAHIPTKK--SLLELTSQDTLLAQN 207
Query: 243 DTLLQKFDKL--TVSVVTPALVSPPCEFCGILDHTG 276
L ++ + L T+S + L S IL TG
Sbjct: 206 KLLSKQLETLTKTLSKLPTQLHSAQTSHSSILQVTG 99
>TC231258 similar to UP|Q886T6 (Q886T6) Sensory box histidine kinase/response
regulator, partial (3%)
Length = 1374
Score = 123 bits (308), Expect = 2e-28
Identities = 76/213 (35%), Positives = 118/213 (54%), Gaps = 5/213 (2%)
Frame = +2
Query: 4 KRALKEYAITSSDESYDAIV--YPTVEGSKFEIKPALIYLVQQNQFFGSPTEDPNLHVSI 61
+R L+E + + D +Y+++ YP E + +K LI+L+ + F G EDP+ H+
Sbjct: 434 ERTLRE--MVAPDFTYESLCNQYPD-EDVPYVLKTGLIHLLPK--FHGLVGEDPHKHLKE 598
Query: 62 FLRLSGTLK---ANQEAVRLHLFPFSLRDRASAWFHSLQIGSITSWNQMRKAFLSQFFPH 118
F + T+K ++ + L FP SL A W + L SI +W+ +++ FL +FFP
Sbjct: 599 FHIVCSTMKPPDVQEDHIFLKAFPHSLEGVAKDWLYYLAPRSIFNWDDLKRVFLEKFFPA 778
Query: 119 SKTAQLRSQITQFTQKDGESLYDAWERFKKMLRLCPHHGFENWLIIHTFYNGLLFSTKMN 178
S+T +R I+ Q ESLY+ WERFKK CPHH L++ FY L +
Sbjct: 779 SRTTTIRKDISGIRQLSRESLYEYWERFKKSCASCPHHQISKQLLL*YFYEELSNMKRSM 958
Query: 179 VDAAAGGALMNKTFTGAYDLIEDMAQNHYQWTS 211
+DAA+GGAL + T T A +LI+ MA N Q+++
Sbjct: 959 IDAASGGALGDMTPTEARNLIKKMASNSQQFSA 1057
>TC222094
Length = 984
Score = 84.0 bits (206), Expect(2) = 4e-28
Identities = 40/122 (32%), Positives = 70/122 (56%), Gaps = 3/122 (2%)
Frame = -2
Query: 3 EKRALKEYAITSSDESYDAIVYPTVEGSKFEIKPALIYLVQQNQFFGSPTEDPNLHVSIF 62
++ L++Y+ + + +I P V+ + F +LI L+Q N F+G PTEDP H++ +
Sbjct: 854 QRMTLEDYSSPIIPQYFTSIARPEVQTANFSYPYSLIQLIQGNLFYGLPTEDPYAHLATY 675
Query: 63 LRLSGTLK---ANQEAVRLHLFPFSLRDRASAWFHSLQIGSITSWNQMRKAFLSQFFPHS 119
+ + T+K ++A+ L LF FSL A W S + ++ +WN+ + FL ++FP S
Sbjct: 674 IDICNTVKIVGVPEDAIHLDLFCFSLAGEARTWLRSFKGNNLRTWNEXXEKFLKKYFPES 495
Query: 120 KT 121
KT
Sbjct: 494 KT 489
Score = 59.3 bits (142), Expect(2) = 4e-28
Identities = 42/129 (32%), Positives = 67/129 (51%)
Frame = -3
Query: 127 QITQFTQKDGESLYDAWERFKKMLRLCPHHGFENWLIIHTFYNGLLFSTKMNVDAAAGGA 186
+I+ F Q ESL +A +RF +L P HGF + ++ F +G+ +K +DA+AGG
Sbjct: 472 EISSFHQHPHESLSEALDRFHGLLWKTPTHGFSEPVQLNIFIDGMQPHSKQLLDASAGGK 293
Query: 187 LMNKTFTGAYDLIEDMAQNHYQWTSERVIADVTPPPSKKEAGMYQVSTLDHLSTKVDTLL 246
+ KT A +LIE+MA N Y ++ D P P ++ ST+++ LL
Sbjct: 292 IKLKTPEEAIELIENMAANDYV-----ILRDQEPSPQEE-------------STRLEELL 167
Query: 247 QKFDKLTVS 255
+F + T S
Sbjct: 166 VQFMQETRS 140
>CF922341
Length = 675
Score = 34.7 bits (78), Expect = 0.10
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +1
Query: 52 TEDPNLHVSIFLRLSGTLKANQEAVRLHLFPFSLRDRASAWFHSLQIGSITSWNQMRKAF 111
T P H+ ++ + G A E + +H F SL A W+ +L+ + SW + AF
Sbjct: 448 TTCPKNHLKMYCQKMGAY-AKDEELLIHSFQESLTGVAVTWYTNLEPSRVHSWKDLMVAF 624
Query: 112 LSQF 115
+ Q+
Sbjct: 625 VRQY 636
>TC228370 similar to UP|Q9AXD7 (Q9AXD7) Response regulator protein, partial
(48%)
Length = 877
Score = 33.5 bits (75), Expect = 0.23
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = +2
Query: 394 LINAIQLRDGKQLEDTIMKTKTIEGEIESEKQQG---EKVIGESDKPIVSPPYKLKIHVP 450
++ ++L D K+L+D M TK + GE+ E+++G K++ SD SPP +P
Sbjct: 476 IVKPVKLSDVKRLKD-YMTTKEVRGELSQEEREGINKRKLLDTSDVSPSSPPSISSSPLP 652
Query: 451 QRLA 454
L+
Sbjct: 653 SSLS 664
>TC228371 similar to UP|Q9AXD7 (Q9AXD7) Response regulator protein, partial
(53%)
Length = 1068
Score = 32.3 bits (72), Expect = 0.51
Identities = 16/52 (30%), Positives = 30/52 (56%), Gaps = 3/52 (5%)
Frame = +2
Query: 394 LINAIQLRDGKQLEDTIMKTKTIEGEIESEKQQG---EKVIGESDKPIVSPP 442
++ ++L D K+L+D + + I GE+ E+++G K++ SD SPP
Sbjct: 710 IVKPVKLSDVKRLKDFMTTKEVIRGELSQEEREGINKRKLLDTSDVSPSSPP 865
>BQ133845
Length = 389
Score = 31.6 bits (70), Expect = 0.86
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 456 PNFIVIESFSTPCVIESETIEKAMCDLGENLRLMPLSL 493
P F+ + PC I + KA+ DLG ++ LMPLS+
Sbjct: 281 PGFVTM-----PCSIGEVAVGKALIDLGASINLMPLSM 379
>TC234879 similar to UP|O64805 (O64805) T1F15.13 protein (Fragment), partial
(11%)
Length = 486
Score = 29.6 bits (65), Expect = 3.3
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +3
Query: 313 KSSLEILLEKHAMEQSKQFQELK--NQTGSLNDSFVKLTSKVDSIAIHTRMLETQI--SQ 368
+SS K+ +Q+K+ ++L+ + GSL SFV L S + H L+ I S
Sbjct: 12 QSSSHCYSPKYFKKQNKKKKKLRMYGKCGSLRSSFVPLASSFSYLNFHVAPLDISILVSS 191
Query: 369 VAQKVATSSPTLEVFP 384
+A K+ L V P
Sbjct: 192 LAVKLPRGCTLLPVHP 239
>TC205298 weakly similar to GB|CAE04608.2|32489693|OSJN00193 OSJNBb0004G23.6
{Oryza sativa (japonica cultivar-group);} , partial
(76%)
Length = 937
Score = 29.6 bits (65), Expect = 3.3
Identities = 29/106 (27%), Positives = 48/106 (44%), Gaps = 4/106 (3%)
Frame = +1
Query: 329 KQFQELKNQTGSLNDSFVKLTSKVDSIAIHTRMLETQISQVAQKVATSSPTL-EVFPGQT 387
+Q +E K + SL S + D I L+T+ ++ ++A P L E F Q
Sbjct: 262 RQVREEKERRQSLRQSRPLPDTPQDLIEY---FLDTEAQEIEFEIARMRPRLNEEFFAQL 432
Query: 388 EANPKSL---INAIQLRDGKQLEDTIMKTKTIEGEIESEKQQGEKV 430
+ L +N QL + +Q+E ++ +EG +K QGE V
Sbjct: 433 KFELGQLRFAVNKTQLMEDRQIELEALEKAILEGLEAYDKMQGELV 570
>TC207684 weakly similar to UP|Q8YXK7 (Q8YXK7) All1205 protein, partial (25%)
Length = 1322
Score = 28.9 bits (63), Expect = 5.6
Identities = 15/39 (38%), Positives = 20/39 (50%)
Frame = -1
Query: 140 YDAWERFKKMLRLCPHHGFENWLIIHTFYNGLLFSTKMN 178
Y W+RFK + +C L IHT YN +L + K N
Sbjct: 1298 YKIWDRFKCLGFVCEDLHCMVSLDIHTHYNNILITQKGN 1182
>CO982510
Length = 488
Score = 28.5 bits (62), Expect = 7.3
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = -1
Query: 212 ERVIADVTPPPSKKEAGMYQVSTLDHLSTKVDTLLQKFDKLTVS--VVTPALVSPPCEFC 269
E +A V PPP K+ S + L +K ++++ ++ A +SPPC F
Sbjct: 212 EHELAPVVPPPEKRRK----------FSPIIWDLAEKEERVSSKSGILQIAALSPPCPFL 63
Query: 270 GILDHTG 276
D TG
Sbjct: 62 SSSDRTG 42
>TC229792 UP|C824_SOYBN (O49859) Cytochrome P450 82A4 (P450 CP9) , complete
Length = 1769
Score = 28.1 bits (61), Expect = 9.5
Identities = 12/44 (27%), Positives = 19/44 (42%)
Frame = +3
Query: 104 WNQMRKAFLSQFFPHSKTAQLRSQITQFTQKDGESLYDAWERFK 147
W ++RK +++ S+ QL+ Q LYD W K
Sbjct: 390 WRELRKIIVTEILSSSRVEQLQDVRVSEVQNSIVELYDVWRSQK 521
>TC227422 similar to UP|P92973 (P92973) CCA1 (MYB-related transcription
factor (CCA1); supported by cDNA: gi:1777442) (MYB
transcription factor), partial (11%)
Length = 901
Score = 28.1 bits (61), Expect = 9.5
Identities = 19/68 (27%), Positives = 30/68 (43%), Gaps = 4/68 (5%)
Frame = -2
Query: 72 NQEAVRLHLFPFSLRDRASAWFHSLQIGSITSWNQM----RKAFLSQFFPHSKTAQLRSQ 127
N++ +LH FPF L+ H S+ W + + F+S FF + QLR +
Sbjct: 360 NKQITKLHTFPFFLK-------H*NPQNSVQKWTSLATKQKHCFVSLFFYPTLLFQLRIE 202
Query: 128 ITQFTQKD 135
T +D
Sbjct: 201 DTLLRSRD 178
>TC231008 similar to UP|Q71BZ4 (Q71BZ4) Type-A response regulator, partial
(15%)
Length = 707
Score = 28.1 bits (61), Expect = 9.5
Identities = 14/32 (43%), Positives = 21/32 (64%)
Frame = +2
Query: 394 LINAIQLRDGKQLEDTIMKTKTIEGEIESEKQ 425
L+ ++L D ++L+D IMK K EGE S K+
Sbjct: 194 LLKPVKLSDVRRLKDFIMKGKVKEGEKISHKR 289
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.316 0.132 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,275,124
Number of Sequences: 63676
Number of extensions: 283167
Number of successful extensions: 1412
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1411
length of query: 500
length of database: 12,639,632
effective HSP length: 101
effective length of query: 399
effective length of database: 6,208,356
effective search space: 2477134044
effective search space used: 2477134044
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Medicago: description of AC139747.4