BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139747.1 - phase: 0 /pseudo
(441 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 441 e-124
NP004897 gag-protease polyprotein 434 e-122
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 432 e-121
CF920770 97 1e-20
BE609922 similar to GP|29423273|g gag-pol polyprotein {Glycine m... 77 1e-14
CD412256 similar to GP|6714295|gb|A F15H18.23 {Arabidopsis thali... 32 0.44
BI970679 weakly similar to PIR|T51235|T512 scarecrow-like protei... 31 0.97
TC208075 similar to UP|Q9FPS8 (Q9FPS8) Ubiquitin-specific protea... 30 2.2
CF922727 30 2.2
TC210254 similar to GB|AAM26637.1|20855902|AY101516 AT3g06940/F1... 29 3.7
TC221307 similar to UP|Q94A51 (Q94A51) AT3g49060/T2J13_100, part... 29 4.8
TC206586 similar to UP|Q25673 (Q25673) Erythrocyte membrane anti... 29 4.8
TC207219 similar to UP|Q8S9J9 (Q8S9J9) At1g14000/F7A19_9, partia... 29 4.8
TC231020 29 4.8
CO980223 28 6.3
BE805076 weakly similar to GP|9294121|dbj copia-like retrotransp... 28 6.3
TC208074 similar to UP|Q754G3 (Q754G3) AFR107Wp, partial (6%) 28 8.2
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 441 bits (1134), Expect = e-124
Identities = 230/442 (52%), Positives = 313/442 (70%), Gaps = 3/442 (0%)
Frame = +1
Query: 3 MDKEGGFVNTPPLLDGLNYDYWKSRMSVFLKFVDNKT*IAVLRGWEHPVTLYADGNMTNV 62
M+KEGG VN PP+LDG NY+YWK+RM FLK +D++T AV++GWEHP L +G TN
Sbjct: 7 MEKEGGPVNRPPILDGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNE 186
Query: 63 LKP*EEWTAAEDELALGNSKALNALFNVVDKNMFKLIKQCIMAKDTLEILKIAHEGTTKV 122
LKP E+WT EDELALGNSKALNALFN VDKN+F+LI C +AKD EILK HEGT+KV
Sbjct: 187 LKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKV 366
Query: 123 KSAKFQLLTTKYENLRMLDDESIQDYHLNILDIANSFESAGEKISDEKLVRKILRSLPKR 182
K ++ QLL TK+ENL+M ++E I D+H+NIL+IAN+ + GE+++DEKLVRKILRSLPKR
Sbjct: 367 KMSRLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKR 546
Query: 183 FDMKVTAIEEARDISSFKVDELIGSLQNFEITVNSKNDKKGKGIAFASSVELDELQVNQE 242
FDMKVTAIEEA+DI + +VDELIGSLQ FE+ ++ + +KK K +AF S+ E +E + + +
Sbjct: 547 FDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRTEKKSKNLAFVSNDEGEEDEYDLD 726
Query: 243 DDEDMTESLTLLGRQFKKIVKQYDKRPRSIGQNIRPNIDNQPSKEKMVRTDEKNFQYKGV 302
DE +T ++ LLG+QF K++ + D+R + +NI D + E ++DEK KG+
Sbjct: 727 TDEGLTNAVVLLGKQFNKVLNRMDRRQKPHVRNI--PFDIRKGSEYQKKSDEKPSHSKGI 900
Query: 303 QCHECEGYGHIKIECASFLKK*KKSLTVSWSDDDGSKGDGERESIKHVAALIGRVFSDAE 362
QCH CEGYGHIK EC + LKK +K L+V SDD ++ + E +S + V AL GR F AE
Sbjct: 901 QCHGCEGYGHIKAECPTHLKKQRKGLSVCRSDD--TESEQESDSDRDVNALTGR-FESAE 1071
Query: 363 SCSE---DLAYDELVVSYKRLNDKNTDICKQLEEQKNITNNLEEERVGYLEKNSELNSEV 419
S+ ++ +DEL +SY+ L K+ I +Q + K + NLE E+ + E+ SEL EV
Sbjct: 1072DSSDTDSEITFDELAISYRELCIKSEKILQQEAQLKKVIANLEAEKEAHEEEISELKGEV 1251
Query: 420 RMLNSQLSNVMKQVKMMAARTD 441
LNS+L N+ K +KM+ +D
Sbjct: 1252GFLNSKLENMTKSIKMLNKGSD 1317
Score = 28.9 bits (63), Expect = 4.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 292 TDEKNFQYKGVQCHECEGYGHIKIEC 317
T +K + K +CH C YGHIK C
Sbjct: 1477 TQQKKSKRKKWRCHYCGKYGHIKPFC 1554
>NP004897 gag-protease polyprotein
Length = 1923
Score = 434 bits (1117), Expect = e-122
Identities = 229/442 (51%), Positives = 310/442 (69%), Gaps = 3/442 (0%)
Frame = +1
Query: 3 MDKEGGFVNTPPLLDGLNYDYWKSRMSVFLKFVDNKT*IAVLRGWEHPVTLYADGNMTNV 62
M+KEGG VN PP+LDG NY+YWK+RM FLK +D++T AV++ WEHP L +G T+
Sbjct: 7 MEKEGGPVNRPPILDGTNYEYWKARMVAFLKSLDSRTWKAVIKDWEHPKMLDTEGKPTDG 186
Query: 63 LKP*EEWTAAEDELALGNSKALNALFNVVDKNMFKLIKQCIMAKDTLEILKIAHEGTTKV 122
LKP E+WT EDELALGNSKALNALFN VDKN+F+LI C +AKD EILK HEGT+KV
Sbjct: 187 LKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKV 366
Query: 123 KSAKFQLLTTKYENLRMLDDESIQDYHLNILDIANSFESAGEKISDEKLVRKILRSLPKR 182
K ++ QLL TK+ENL+M ++E I D+H+NIL+IAN+ + GE+++DEKLVRKILRSLPKR
Sbjct: 367 KMSRLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKR 546
Query: 183 FDMKVTAIEEARDISSFKVDELIGSLQNFEITVNSKNDKKGKGIAFASSVELDELQVNQE 242
FDMKVTAIEEA+DI + +VDELIGSLQ FE+ ++ + +KK K +AF S+ E +E + + +
Sbjct: 547 FDMKVTAIEEAQDICNLRVDELIGSLQTFELGLSDRTEKKSKNLAFVSNDEGEEDEYDLD 726
Query: 243 DDEDMTESLTLLGRQFKKIVKQYDKRPRSIGQNIRPNIDNQPSKEKMVRTDEKNFQYKGV 302
DE +T ++ LLG+QF K++ + D+R + +NI D + E R+DEK KG
Sbjct: 727 TDEGLTNAVVLLGKQFNKVLNRMDRRQKPHVRNI--PFDIRKGSEYQKRSDEKPSHSKGF 900
Query: 303 QCHECEGYGHIKIECASFLKK*KKSLTVSWSDDDGSKGDGERESIKHVAALIGRVFSDAE 362
QCH CEGYGHIK EC + LKK +K L+V SDD ++ + E +S + V AL GR F AE
Sbjct: 901 QCHGCEGYGHIKAECPTHLKKQRKGLSVCRSDD--TESEQESDSDRDVNALTGR-FESAE 1071
Query: 363 SCSE---DLAYDELVVSYKRLNDKNTDICKQLEEQKNITNNLEEERVGYLEKNSELNSEV 419
S+ ++ +DEL SY+ L K+ I +Q + K + NLE E+ + E+ SEL EV
Sbjct: 1072DSSDTDSEITFDELATSYRELCIKSEKILQQEAQLKKVIANLEAEKEAHEEEISELKGEV 1251
Query: 420 RMLNSQLSNVMKQVKMMAARTD 441
LNS+L N+ K +KM+ +D
Sbjct: 1252GFLNSKLENMTKSIKMLNKGSD 1317
Score = 28.9 bits (63), Expect = 4.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 292 TDEKNFQYKGVQCHECEGYGHIKIEC 317
T +K + K +CH C YGHIK C
Sbjct: 1477 TQQKKSKRKKWRCHYCGKYGHIKPFC 1554
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 432 bits (1112), Expect = e-121
Identities = 229/442 (51%), Positives = 312/442 (69%), Gaps = 3/442 (0%)
Frame = +1
Query: 3 MDKEGGFVNTPPLLDGLNYDYWKSRMSVFLKFVDNKT*IAVLRGWEHPVTLYADGNMTNV 62
M+KEGG VN PP+LDG NY+YWK+RM FLK +D++T AV++GWEHP L +G T+
Sbjct: 7 MEKEGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDE 186
Query: 63 LKP*EEWTAAEDELALGNSKALNALFNVVDKNMFKLIKQCIMAKDTLEILKIAHEGTTKV 122
LKP E+WT EDELALGNSKALNALFN VDKN+F+LI C +AKD EILKI HEGT+KV
Sbjct: 187 LKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKV 366
Query: 123 KSAKFQLLTTKYENLRMLDDESIQDYHLNILDIANSFESAGEKISDEKLVRKILRSLPKR 182
K ++ QLL TK+ENL+M ++E I D+H+NIL+IAN+ + GE+I+DEKLVRKILRSLPKR
Sbjct: 367 KMSRLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKR 546
Query: 183 FDMKVTAIEEARDISSFKVDELIGSLQNFEITVNSKNDKKGKGIAFASSVELDELQVNQE 242
FDMKVTAIEEA+DI + +VDELIGSLQ FE+ ++ + +KK K +AF S+ E +E + + +
Sbjct: 547 FDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRAEKKSKNLAFVSNDEGEEDEYDLD 726
Query: 243 DDEDMTESLTLLGRQFKKIVKQYDKRPRSIGQNIRPNIDNQPSKEKMVRTDEKNFQYKGV 302
DE +T ++ LLG+QF K++ + DKR + QNI +I +K R+D K KG+
Sbjct: 727 TDEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQK--RSDVKPSHSKGI 900
Query: 303 QCHECEGYGHIKIECASFLKK*KKSLTVSWSDDDGSKGDGERESIKHVAALIGRVFSDAE 362
QCH CEGYGHI EC + LKK +K L+V SD ++ + E +S + V AL G +F AE
Sbjct: 901 QCHGCEGYGHIIAECPTHLKKHRKGLSVCQSD---TESEQESDSDRDVNALTG-IFETAE 1068
Query: 363 SCSE---DLAYDELVVSYKRLNDKNTDICKQLEEQKNITNNLEEERVGYLEKNSELNSEV 419
S+ ++ +DEL SY++L K+ I +Q + K + +LE E+ + E+ SEL EV
Sbjct: 1069DSSDTDSEITFDELAASYRKLCIKSEKILQQEAQLKKVIADLEAEKEAHKEEISELKGEV 1248
Query: 420 RMLNSQLSNVMKQVKMMAARTD 441
LNS+L N+ K +KM+ +D
Sbjct: 1249GFLNSKLENMTKSIKMLNKGSD 1314
>CF920770
Length = 581
Score = 97.1 bits (240), Expect = 1e-20
Identities = 50/150 (33%), Positives = 82/150 (54%)
Frame = -2
Query: 64 KP*EEWTAAEDELALGNSKALNALFNVVDKNMFKLIKQCIMAKDTLEILKIAHEGTTKVK 123
KP + W+ + + N KA N + + + + + + C AK+ + L++ HEGTT VK
Sbjct: 469 KPRDRWSEEDRKRVQYNLKAKNIITSALGMDEYFRVSNCKSAKEMWDTLRLTHEGTTDVK 290
Query: 124 SAKFQLLTTKYENLRMLDDESIQDYHLNILDIANSFESAGEKISDEKLVRKILRSLPKRF 183
++ LT +YE RM +E+IQ I N + G++ +E L+ K+LR L + +
Sbjct: 289 RSRINALTHEYELFRMNTNENIQSMQKRFTHIVNHLAALGKEFQNEDLINKVLRCLSREW 110
Query: 184 DMKVTAIEEARDISSFKVDELIGSLQNFEI 213
KVTAI E+RD+S+ + L G LQ E+
Sbjct: 109 QPKVTAISESRDLSNMSLATLFGKLQEHEM 20
>BE609922 similar to GP|29423273|g gag-pol polyprotein {Glycine max}, partial
(7%)
Length = 340
Score = 77.4 bits (189), Expect = 1e-14
Identities = 40/115 (34%), Positives = 70/115 (60%)
Frame = +2
Query: 202 DELIGSLQNFEITVNSKNDKKGKGIAFASSVELDELQVNQEDDEDMTESLTLLGRQFKKI 261
DEL+GSLQ FE+ ++ + +KK K +AF S+ E +E + + + DE +T + LLG+QF K+
Sbjct: 2 DELMGSLQTFELGLSDRAEKKSKNLAFMSNDEGEEGEYDLDTDEGLTNAGVLLGKQFSKV 181
Query: 262 VKQYDKRPRSIGQNIRPNIDNQPSKEKMVRTDEKNFQYKGVQCHECEGYGHIKIE 316
+ + D+R + Q+ R ++ + S + + + +G+QCH CEG H+ E
Sbjct: 182 MNRIDRRQKPHVQSRRGDV--RKSSKYQRKWGVRPMHGRGMQCHGCEGVWHVIAE 340
>CD412256 similar to GP|6714295|gb|A F15H18.23 {Arabidopsis thaliana},
partial (12%)
Length = 612
Score = 32.3 bits (72), Expect = 0.44
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Frame = -3
Query: 339 KGDGERESIKHVAALIGRVFSDAESCSEDLAYDELVVSYKRL----NDKNTDICKQLEEQ 394
KG GER + G+V ++ E C+ED +D V++ +R+ K C LE++
Sbjct: 592 KGSGERGNAVSDDGSEGKVENEREGCNEDEVFD--VMTLRRIVRMERQKANAACADLEKE 419
Query: 395 KNITNNLEEERVGYLEKNSELNSEVRMLNSQLSNVMKQ 432
+ + EE + + + S + +Q + +Q
Sbjct: 418 RTAASLSAEEAMAMILRLQSEKSAAEIQATQFRRMAEQ 305
>BI970679 weakly similar to PIR|T51235|T512 scarecrow-like protein 3
[imported] - Arabidopsis thaliana (fragment), partial
(21%)
Length = 688
Score = 31.2 bits (69), Expect = 0.97
Identities = 25/112 (22%), Positives = 52/112 (46%), Gaps = 16/112 (14%)
Frame = -1
Query: 150 LNILDIANSFESAGEKISDEKLVRKILRSLPKRFDMKVTAIEEARDISS----------- 198
+N+LD++ S + L++ + S P + +TAI E +++
Sbjct: 487 INVLDLSPS----NNALQWTNLIKCLKPSTPTCPKITITAIHEKKEVLEKMGLHLGVEAQ 320
Query: 199 -----FKVDELIGSLQNFEITVNSKNDKKGKGIAFASSVELDELQVNQEDDE 245
F+ + ++ SL+N + + KKG+ +A +S ++L L + +DDE
Sbjct: 319 RLLFPFQFNPVVSSLENLD--PETLPIKKGEPLAISSVLQLHSLLASDDDDE 170
>TC208075 similar to UP|Q9FPS8 (Q9FPS8) Ubiquitin-specific protease 16,
partial (4%)
Length = 694
Score = 30.0 bits (66), Expect = 2.2
Identities = 19/72 (26%), Positives = 39/72 (53%), Gaps = 2/72 (2%)
Frame = -1
Query: 225 GIAFASSVELDELQVNQEDDEDMTES--LTLLGRQFKKIVKQYDKRPRSIGQNIRPNIDN 282
G++ + E + + EDDED++ES L L + F + K+Y ++ + ++ ++
Sbjct: 478 GLSISDRGECRKFKGEYEDDEDVSESEFLHTLLQPFPESPKRYSEKSSVLVESRVLSVLQ 299
Query: 283 QPSKEKMVRTDE 294
+PS E ++ DE
Sbjct: 298 EPSSELLLIRDE 263
>CF922727
Length = 791
Score = 30.0 bits (66), Expect = 2.2
Identities = 31/151 (20%), Positives = 66/151 (43%), Gaps = 1/151 (0%)
Frame = -2
Query: 14 PLLDGLNYDYWKSRMSVFLKFVDNKT*IAVLRGWEHPVTLYADGNMTNVLKP*EEWTAAE 73
P+L G NY WK R+ + L ++D +R E PV + + +V+ E+W
Sbjct: 430 PILKGDNYKVWKERVLLHLGWMDID---YAIRKDEPPV--ITETSEPDVVDLYEKWE--- 275
Query: 74 DELALGNSKALNALFNVVDKNMFKLIKQCIMAKDTL-EILKIAHEGTTKVKSAKFQLLTT 132
S L+ +F + N+ I + D + ++LK E T + + L
Sbjct: 274 ------RSNRLSVMF--IKTNISTSIWGSVDQHDKVRDLLKAIDERFTTSEKSLASTLIM 119
Query: 133 KYENLRMLDDESIQDYHLNILDIANSFESAG 163
++ ++++ ++++ + + DI ++ G
Sbjct: 118 QFSSIKLTGTRGVREHIMRLRDIVAQLKTPG 26
>TC210254 similar to GB|AAM26637.1|20855902|AY101516 AT3g06940/F17A9_9
{Arabidopsis thaliana;} , partial (6%)
Length = 814
Score = 29.3 bits (64), Expect = 3.7
Identities = 12/42 (28%), Positives = 21/42 (49%)
Frame = +1
Query: 276 IRPNIDNQPSKEKMVRTDEKNFQYKGVQCHECEGYGHIKIEC 317
I P P + KM + + + + +QC +C+G GH + C
Sbjct: 295 IPPPTKRPPGRPKMKQVESIDIIKRQLQCSKCKGLGHNRKTC 420
>TC221307 similar to UP|Q94A51 (Q94A51) AT3g49060/T2J13_100, partial (6%)
Length = 629
Score = 28.9 bits (63), Expect = 4.8
Identities = 13/66 (19%), Positives = 34/66 (50%)
Frame = +3
Query: 371 DELVVSYKRLNDKNTDICKQLEEQKNITNNLEEERVGYLEKNSELNSEVRMLNSQLSNVM 430
DE++ + + D+N+ + Q+ E + LEE+ + ++ + L + +N +
Sbjct: 54 DEILEELQMVQDQNSALMNQISESQCTETELEEKIISAVDLLISFREQRDRLRIEHANAV 233
Query: 431 KQVKMM 436
++VK++
Sbjct: 234 REVKVL 251
>TC206586 similar to UP|Q25673 (Q25673) Erythrocyte membrane antigen 1,
partial (7%)
Length = 533
Score = 28.9 bits (63), Expect = 4.8
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = +2
Query: 334 DDDGSKGDGERESIKHVAALIGRVFSDAESCSEDLAYDELVVSYKRLNDKNTDICKQLEE 393
+D S RES ++L G SD ESC++D + N+K D K+ EE
Sbjct: 50 EDCCSYTSSNRESWGRCSSLGG---SDEESCADDTLSQVFATPMRSTNEKEKDDDKKHEE 220
Query: 394 QK 395
+K
Sbjct: 221 KK 226
>TC207219 similar to UP|Q8S9J9 (Q8S9J9) At1g14000/F7A19_9, partial (82%)
Length = 1189
Score = 28.9 bits (63), Expect = 4.8
Identities = 17/70 (24%), Positives = 33/70 (46%), Gaps = 3/70 (4%)
Frame = +1
Query: 339 KGDGERESIKHVAALIGRVFSDAESCSEDLAYDELVVSYKRLNDKNT---DICKQLEEQK 395
+G+GE ES HVA + R SC+E L +RL + + +L+ ++
Sbjct: 115 EGEGEAESESHVADTLARAPKRRRSCAEAPPGGSLARQGQRLRQPHAAPRGVAPRLDRRR 294
Query: 396 NITNNLEEER 405
++++ + R
Sbjct: 295 HLSHRVRRRR 324
>TC231020
Length = 704
Score = 28.9 bits (63), Expect = 4.8
Identities = 15/53 (28%), Positives = 32/53 (60%)
Frame = +2
Query: 142 DESIQDYHLNILDIANSFESAGEKISDEKLVRKILRSLPKRFDMKVTAIEEAR 194
++ ++DY+LN+ ++ + A E++ D +L R L+SL ++V +E A+
Sbjct: 302 EKLLEDYNLNVANVRDLRSFAAERLGDLELKRAGLKSL----GLRVLGLEVAK 448
>CO980223
Length = 821
Score = 28.5 bits (62), Expect = 6.3
Identities = 18/31 (58%), Positives = 22/31 (70%), Gaps = 5/31 (16%)
Frame = -1
Query: 230 SSVELDEL--QVN---QEDDEDMTESLTLLG 255
SS +LD+L Q+N QEDDED ES+T LG
Sbjct: 569 SSDDLDDLDYQMNGEEQEDDEDNQESVTALG 477
>BE805076 weakly similar to GP|9294121|dbj copia-like retrotransposable
element {Arabidopsis thaliana}, partial (2%)
Length = 388
Score = 28.5 bits (62), Expect = 6.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 14 PLLDGLNYDYWKSRMSVFLKFVD 36
P+ +G NYD+W+ +M +L D
Sbjct: 133 PIFNGENYDFWRVKMETYLSSQD 201
>TC208074 similar to UP|Q754G3 (Q754G3) AFR107Wp, partial (6%)
Length = 759
Score = 28.1 bits (61), Expect = 8.2
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = -3
Query: 233 ELDELQVNQEDDEDMTES--LTLLGRQFKKIVKQYDKRPRSIGQNIRPNIDNQPSKEKMV 290
E + + EDDED++ES L L + F + K+Y ++ + ++ ++ +PS E ++
Sbjct: 301 ECRKFKGEDEDDEDVSESEFLHTLLQPFPESPKRYSEKSSVLVESRVLSVLQEPSSELLL 122
Query: 291 RTDE 294
DE
Sbjct: 121 IRDE 110
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.318 0.135 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,757,232
Number of Sequences: 63676
Number of extensions: 166152
Number of successful extensions: 788
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of query: 441
length of database: 12,639,632
effective HSP length: 100
effective length of query: 341
effective length of database: 6,272,032
effective search space: 2138762912
effective search space used: 2138762912
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Medicago: description of AC139747.1