BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139745.5 + phase: 0 /pseudo
(2129 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 369 e-101
CF922488 332 1e-90
TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 275 2e-73
TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 217 3e-70
NP595172 polyprotein [Glycine max] 228 2e-59
NP334778 reverse transcriptase [Glycine max] 219 8e-57
TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 204 3e-52
BQ628592 105 2e-47
NP395547 reverse transcriptase [Glycine max] 186 7e-47
NP395548 reverse transcriptase [Glycine max] 178 3e-44
TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotei... 169 2e-41
BI498328 123 7e-28
BG839293 110 7e-24
AW184779 109 1e-23
BI316922 100 1e-20
BE804087 83 1e-15
BI321666 80 9e-15
TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%) 63 2e-14
BE660092 weakly similar to GP|9884624|dbj retroelement pol polyp... 78 4e-14
BE802896 66 2e-10
>TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (9%)
Length = 843
Score = 369 bits (946), Expect = e-101
Identities = 170/274 (62%), Positives = 208/274 (75%)
Frame = +1
Query: 1677 NHWNDVPIIRVQRLERPSHVFAIGDVIDQAGENVIDYRPWYYDIKQFLLSREYPPGASKQ 1736
N D+P I +P+H + E D +PWY+DIK++++S+EY P +
Sbjct: 46 NAARDLPYIEFWCRGKPAHCCQV--------EEERDGKPWYFDIKRYVISKEYLPEIADN 201
Query: 1737 DKKTLRRLAGRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSR 1796
DK+TLRRLA F + G ILYKRN+DM LRCVD EA ++ +VH+G+FGTHA GH M+R
Sbjct: 202 DKRTLRRLAAGFFMSGSILYKRNHDMKPLRCVDAREANHMIEEVHEGSFGTHANGHAMAR 381
Query: 1797 KLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRI 1856
K+LRAGYYW+ ME DC + RKCHKCQ +AD ++ PPH LNVMSSPWPFSMWGID+IG I
Sbjct: 382 KILRAGYYWLTMESDCCVHVRKCHKCQAFADNVNAPPHPLNVMSSPWPFSMWGIDVIGAI 561
Query: 1857 EPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTN 1916
EPKASNGHRFILVAIDYFTKWVEAASYT+V + VV +FIK IICRYG+P KIITDNGTN
Sbjct: 562 EPKASNGHRFILVAIDYFTKWVEAASYTDVMRGVVVRFIKKEIICRYGLPRKIITDNGTN 741
Query: 1917 LNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAA 1950
LNN ++ +CEEFKI+HHN +PYRP+MN AVE A
Sbjct: 742 LNNKMMGEICEEFKIQHHNPTPYRPKMN*AVEVA 843
>CF922488
Length = 741
Score = 332 bits (850), Expect = 1e-90
Identities = 167/246 (67%), Positives = 192/246 (77%)
Frame = +3
Query: 1133 VPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSP 1192
V K+DGKV MCVD+RDLN ASPKD FPLPHI+VLVDNT FSFMDGFSGYNQIK++P
Sbjct: 3 VLKEDGKV*MCVDYRDLN*ASPKDKFPLPHINVLVDNTTSFSQFSFMDGFSGYNQIKIAP 182
Query: 1193 EDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTD 1252
ED EKT+FIT WGTFCYK M FGL N GATYQR M LF DM+HKE+EVY+DDMIVKS
Sbjct: 183 EDMEKTTFITLWGTFCYKAMSFGLKNVGATYQRAMVALF*DMMHKEIEVYMDDMIVKSRT 362
Query: 1253 EEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMP 1312
EE+H+ L K+F RLRKY+LRLNP KC F V+S KLL FI S +GIEVD +KV+ I EM
Sbjct: 363 EEEHLVNLRKLFRRLRKYRLRLNPAKCMFEVKSRKLLDFIDS*RGIEVDSNKVKVILEMA 542
Query: 1313 APQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKNYLL 1372
P TEKQV+GFLGRLNYI RFIS + ATC P+F LL KNQ V W+ +C AF+ IK L+
Sbjct: 543 KPHTEKQVQGFLGRLNYIVRFIS*LIATCEPLFILLCKNQFVKWDHDC*VAFERIKQCLI 722
Query: 1373 EPPILV 1378
P +LV
Sbjct: 723 NPHVLV 740
>TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
Length = 669
Score = 275 bits (703), Expect = 2e-73
Identities = 128/182 (70%), Positives = 157/182 (85%)
Frame = +1
Query: 1948 EAANKNIKRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 2007
EAANKNIK+I+QKM +YKDWHEMLP+ALHGYRT+VR+STGATPFSLVYGMEAVLP EVE
Sbjct: 1 EAANKNIKKIIQKMTVSYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPFEVE 180
Query: 2008 IPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFK 2067
+PSLR++ E+ L E+EW Q+RYDQLNLIE KR+ AM+ G+ YQ RMK+AFDKKV R+F
Sbjct: 181 VPSLRILAESGLKESEWAQTRYDQLNLIEGKRLTAMSHGRLYQQRMKSAFDKKVCLRKFH 360
Query: 2068 VGELVLKRKISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKK 2127
G+LVLK+ D RGKW PNYEGP+VVK+AFSGGAL+LT+MDG ELP+P+N+D+VK+
Sbjct: 361 EGDLVLKKMSHAVKDHRGKWAPNYEGPFVVKRAFSGGALVLTNMDGEELPSPMNSDVVKR 540
Query: 2128 YF 2129
Y+
Sbjct: 541 YY 546
>TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (3%)
Length = 803
Score = 217 bits (553), Expect(2) = 3e-70
Identities = 104/207 (50%), Positives = 142/207 (68%)
Frame = +2
Query: 1599 IEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHIPR 1658
++ AID +K L +YGDSALVI+Q++GE ET NLIPY+ Y + L +F ++ HH+
Sbjct: 206 VQAAIDSNVKLLKVYGDSALVIHQLRGECETRDPNLIPYQAYIKELAGFFDEISFHHVA* 385
Query: 1659 DENQMADALATLSSMFRVNHWNDVPIIRVQRLERPSHVFAIGDVIDQAGENVIDYRPWYY 1718
+ENQMADALATL SMF++ D+P I + RP+H + E D +PWY+
Sbjct: 386 EENQMADALATLVSMFQLTPHGDLPYIEFRCRGRPAHCCLV--------EEERDGKPWYF 541
Query: 1719 DIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMH 1778
DIK+++ S+EYP AS DK+ RRLA F + G ILYKRN+DMVLL CV+ E E ++
Sbjct: 542 DIKRYVESKEYPLEASDNDKRRKRRLAAGFFMSGSILYKRNHDMVLLHCVNGKEVENMLG 721
Query: 1779 DVHDGTFGTHATGHTMSRKLLRAGYYW 1805
+VH+G+FGTH+ GH M+RK+LRAGYYW
Sbjct: 722 EVHEGSFGTHSNGHAMARKILRAGYYW 802
Score = 68.9 bits (167), Expect(2) = 3e-70
Identities = 30/53 (56%), Positives = 37/53 (69%)
Frame = +1
Query: 1543 DPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 1595
+ KW + FD A N G G+GA++VSP IPFT R+ F+CTNNMAEYEAC
Sbjct: 37 EDRDKWIVWFDRASNVLGHGVGAILVSPDNQCIPFTTRLGFDCTNNMAEYEAC 195
>NP595172 polyprotein [Glycine max]
Length = 4659
Score = 228 bits (581), Expect = 2e-59
Identities = 150/465 (32%), Positives = 236/465 (50%), Gaps = 1/465 (0%)
Frame = +1
Query: 1043 LEEGVKQKVIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMA 1102
L + ++ LL Y +FA P + +H IP K PV+ + R
Sbjct: 1660 LPTNIDPELAILLHTYAQVFAVPASLPPQREQ---DHAIPLKQGSGPVKVRPYRYPHTQK 1830
Query: 1103 LKIKNEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPH 1162
+I+ +Q+ + G + P + I+ V KKDG R C D+R LN + KD+FP+P
Sbjct: 1831 DQIEKMIQEMLVQGIIQPSNSP-FSLPILLVKKKDGSWRFCTDYRALNAITVKDSFPMPT 2007
Query: 1163 IDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGAT 1222
+D L+D ++ FS +D SGY+QI + PEDREKT+F T G + + VMPFGL NA AT
Sbjct: 2008 VDELLDELHGAQYFSKLDLRSGYHQILVQPEDREKTAFRTHHGHYEWLVMPFGLTNAPAT 2187
Query: 1223 YQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFG 1282
+Q M +F + K V V+ DD+++ S + H+++L + + L++++L +KC+FG
Sbjct: 2188 FQCLMNKIFQFALRKFVLVFFDDILIYSASWKDHLKHLESVLQTLKQHQLFARLSKCSFG 2367
Query: 1283 VRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCG 1342
LG VS G+ ++ KV+A+ + P P KQ+RGFLG Y RFI G
Sbjct: 2368 DTEVDYLGHKVSGLGVSMENTKVQAVLDWPTPNNVKQLRGFLGLTGYYRRFIKSYANIAG 2547
Query: 1343 PIFKLLRKNQPVVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLG 1402
P+ LL+K+ +WN+E + AF +K + E P+L P +P I+ +G VLG
Sbjct: 2548 PLTDLLQKDS-FLWNNEAEAAFVKLKKAMTEAPVLSLPDFSQPFILETDASGIGVGAVLG 2724
Query: 1403 QQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDP 1462
Q H I Y SKK + + + A+ A + RHYL+ + + +
Sbjct: 2725 QNG------HPIAYFSKKLAPRMQKQSAYTRELLAITEALSKFRHYLLGNKFIIRTDQRS 2886
Query: 1463 IKYIFEKAAVTGKIARWQMLLSEYDIVFKTQ-KAIKGSILADHLA 1506
+K + +++ T + W YD FK + K K + AD L+
Sbjct: 2887 LKSLMDQSLQTPEQQAWLHKFLGYD--FKIEYKPGKDNQAADALS 3015
Score = 95.9 bits (237), Expect = 2e-19
Identities = 141/556 (25%), Positives = 229/556 (40%), Gaps = 15/556 (2%)
Frame = +1
Query: 1557 NAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDS 1616
+A G G+GAV+ GH I + ++ L + Y + I EA+ + +H + G+
Sbjct: 2689 DASGIGVGAVL-GQNGHPIAYFSKKLAPRMQKQSAYTRELLAITEALS-KFRHY-LLGNK 2859
Query: 1617 ALVINQIKGEWETHHANLIPYRDYA--RRLLTYFTKVELHHIPRDENQMADALATLSSMF 1674
++ + +L A + L Y K+E + P +NQ ADAL S MF
Sbjct: 2860 FIIRTDQRSLKSLMDQSLQTPEQQAWLHKFLGYDFKIE--YKPGKDNQAADAL---SRMF 3024
Query: 1675 RVNHWNDVPIIRVQRLERPSHVFAIGDVIDQAGENVIDYRPWYYDIKQFLLSREYPPGAS 1734
+ W++ I ++ L I D +KQ L Y GA
Sbjct: 3025 MLA-WSEPHSIFLEELRAR----LISDP----------------HLKQ--LMETYKQGAD 3135
Query: 1735 KQDKKTLRRLAGRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTM 1794
A + + +LY + D V++ +E +++ + H G HA G T
Sbjct: 3136 ----------ASHYTVREGLLYWK--DRVVIPA-EEEIVNKILQEYHSSPIGGHA-GITR 3273
Query: 1795 SRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMW---GID 1851
+ L+A +YW M+ D Y +KC CQ +P L + P P +W +D
Sbjct: 3274 TLARLKAQFYWPKMQEDVKAYIQKCLICQQAKSNNTLPAGLLQPL--PIPQQVWEDVAMD 3447
Query: 1852 MIGRIEPKASNGHRFILVAIDYFTKWVEAASY-TNVTKQVVAKFIKNNIICRYGVPSKII 1910
I + S G I+V ID TK+ + +VVA+ ++I+ +G+P I+
Sbjct: 3448 FITGLPN--SFGLSVIMVVIDRLTKYAHFIPLKADYNSKVVAEAFMSHIVKLHGIPRSIV 3621
Query: 1911 TDNGTNLNNNVVQALCEEFKIEHHN---SSPYRPQMNGAVEAANKNIKRIVQKMVTTY-K 1966
+D + Q L FK++ SS Y PQ +G E NK ++ ++ + K
Sbjct: 3622 SDRDRVFTSTFWQHL---FKLQGTTLAMSSAYHPQSDGQSEVLNKCLEMYLRCFTYEHPK 3792
Query: 1967 DWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQ 2026
W + LP+A Y T S G TPF +YG E P+L + AE +
Sbjct: 3793 GWVKALPWAEFWYNTAYHMSLGMTPFRALYGREP--------PTLTRQACSIDDPAEVRE 3948
Query: 2027 SRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVL-----KRKISQQP 2081
D+ L+ + +++ + R Q MK DKK F++G+ VL R+ S
Sbjct: 3949 QLTDRDALLAKLKIN-LTRAQQV---MKRQADKKRLDVSFQIGDEVLVKLQPYRQHSAVL 4116
Query: 2082 DPRGKWTPNYEGPYVV 2097
K + Y GP+ V
Sbjct: 4117 RKNQKLSMRYFGPFKV 4164
>NP334778 reverse transcriptase [Glycine max]
Length = 431
Score = 219 bits (559), Expect = 8e-57
Identities = 101/143 (70%), Positives = 117/143 (81%)
Frame = +3
Query: 1141 RMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSF 1200
RMCVD+RDLN+ASPKDNFPLPHID+L+ N A +FSFMDGFSGYNQIKM+PED EKT+F
Sbjct: 3 RMCVDYRDLNRASPKDNFPLPHIDILMANMASFALFSFMDGFSGYNQIKMAPEDMEKTTF 182
Query: 1201 ITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYL 1260
IT WGTFCYKVM FGL N GATY R M LF DM+HKE+E YVD+MI KS EE+H+ L
Sbjct: 183 ITLWGTFCYKVMSFGLKNFGATYHRAMVALFQDMMHKEIEAYVDEMIAKSRMEEEHLVNL 362
Query: 1261 TKMFERLRKYKLRLNPNKCTFGV 1283
+F +LRKY+LRLNP KC FG+
Sbjct: 363 QNLFGQLRKYRLRLNPRKCVFGL 431
>TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
Length = 402
Score = 204 bits (520), Expect = 3e-52
Identities = 96/133 (72%), Positives = 113/133 (84%)
Frame = +2
Query: 1176 FSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMI 1235
FSFMDGFSGYNQI M+ ED EKT+F+T WGTF Y+VM FGL N GATYQR M LFHDM+
Sbjct: 2 FSFMDGFSGYNQI*MAREDVEKTTFVTLWGTFSYRVMAFGLKNTGATYQRAMVALFHDMM 181
Query: 1236 HKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQ 1295
HKE+EVYVDDMI KS E +H+ L K+F RL+KY+L+LNP KCTFGV+SGKLLGFIVSQ
Sbjct: 182 HKEIEVYVDDMIAKSRTETEHLVNLCKLFGRLQKYQLKLNPTKCTFGVKSGKLLGFIVSQ 361
Query: 1296 KGIEVDPDKVRAI 1308
KGIE+DP+KV+A+
Sbjct: 362 KGIEIDPEKVKAL 400
>BQ628592
Length = 423
Score = 105 bits (263), Expect(2) = 2e-47
Identities = 47/76 (61%), Positives = 58/76 (75%)
Frame = -1
Query: 1348 LRKNQPVVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDET 1407
L KNQ ++WN QEAF+ IK L P +L+PPV GRP ++Y+ + DESMGCVL Q D++
Sbjct: 423 LPKNQAILWNSNYQEAFEKIKQSLANPSVLMPPVTGRPFLLYMTMLDESMGCVLVQHDDS 244
Query: 1408 GKKEHAIYYLSKKFTD 1423
GKKE AIYYLSKKFTD
Sbjct: 243 GKKEQAIYYLSKKFTD 196
Score = 104 bits (259), Expect(2) = 2e-47
Identities = 43/61 (70%), Positives = 56/61 (91%)
Frame = -3
Query: 1428 YTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYD 1487
Y+MLE+TCC L WA+ RLR Y+++HTTWLIS+MDP+KYIFEK A+TG+IARWQ+LLSE++
Sbjct: 184 YSMLERTCCTLVWASHRLRQYMLSHTTWLISKMDPVKYIFEKPALTGRIARWQVLLSEFN 5
Query: 1488 I 1488
I
Sbjct: 4 I 2
>NP395547 reverse transcriptase [Glycine max]
Length = 762
Score = 186 bits (473), Expect = 7e-47
Identities = 95/252 (37%), Positives = 143/252 (56%), Gaps = 18/252 (7%)
Frame = +1
Query: 1105 IKNEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKV------------------RMCVDF 1146
++ EV K ++AG + + WV+ + VPKK G RMC+D+
Sbjct: 1 VRKEVFKLLEAGLIYPISDSSWVSPVQVVPKKGGMTVVKNDRNELIPTRRVTRWRMCIDY 180
Query: 1147 RDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGT 1206
R LN+A+ KD++PLP +D ++ A+ + F+DG+SGYNQI + P+D+EKT+F P+
Sbjct: 181 RKLNEATRKDHYPLPFMDQMLKRLARQSFYRFLDGYSGYNQIAVDPQDQEKTAFTCPFSV 360
Query: 1207 FCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFER 1266
F Y+ MPFGL NA T+QR M +F DM+ K +EV++DD + L K+ +R
Sbjct: 361 FAYRRMPFGLCNASTTFQRCMMAIFDDMVEKCIEVFMDDFSFFGASFGNCLANLEKVLQR 540
Query: 1267 LRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGR 1326
K L LN KC F V+ G +LG +S++GIEV +K+ I ++P P K + FLG
Sbjct: 541 CEKSNLVLNWEKCHFMVQEGIVLGHKISKRGIEVVKEKLDVIDKLPPPVNVKGIHSFLGH 720
Query: 1327 LNYISRFISHMT 1338
+ + RFI T
Sbjct: 721 VGFYRRFIKDFT 756
>NP395548 reverse transcriptase [Glycine max]
Length = 762
Score = 178 bits (451), Expect = 3e-44
Identities = 90/252 (35%), Positives = 142/252 (55%), Gaps = 18/252 (7%)
Frame = +1
Query: 1105 IKNEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKV------------------RMCVDF 1146
++ EV K ++ G + + WV+ ++ V KK+G ++C+D+
Sbjct: 1 VRKEVLKLLEVGLIYPISDSAWVSPVLVVSKKEGMTVIRNEKNDLIPTRTVTSWKLCIDY 180
Query: 1147 RDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGT 1206
R LN+A+ KD+FPLP +D +++ A + F+D + GYNQI + P+D+EK +F P+G
Sbjct: 181 RKLNEATRKDHFPLPFMDQMLERLAGHAYYCFLDAYFGYNQIVVDPKDQEKMAFTCPFGV 360
Query: 1207 FCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFER 1266
F Y+ +PFGL NA T+Q M +F D++ K +EV++DD V E ++ L + +R
Sbjct: 361 FAYRRIPFGLCNAPTTFQMCMLAIFADIVEKSIEVFMDDFSVFVPSLESCLKKLEMVLQR 540
Query: 1267 LRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGR 1326
+ L LN KC F VR G +LG +S +GIEVD K+ I ++P P K +R FLG+
Sbjct: 541 CVETNLVLNWEKCHFMVREGIVLGHKISTRGIEVDQTKIDVIEKLPPPSNVKGIRSFLGQ 720
Query: 1327 LNYISRFISHMT 1338
+ RFI T
Sbjct: 721 ARFYRRFIKDFT 756
>TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotein (Fragment),
partial (8%)
Length = 1320
Score = 169 bits (427), Expect = 2e-41
Identities = 80/158 (50%), Positives = 112/158 (70%), Gaps = 4/158 (2%)
Frame = +3
Query: 981 TVPPNFDFP--VYEAEDEEGDDI--PYEITRLLEQEKKAIQPHQEEIELINIGTEENKQE 1036
T P+ DF + + EDE +D+ P E+ R++ E + + PHQEE EL+++G+ K+E
Sbjct: 846 TWDPSIDFEQKMNQTEDEGNEDVGLPPELERMVAHEDQEMGPHQEETELVDLGSGSGKRE 1025
Query: 1037 IKIGATLEEGVKQKVIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRR 1096
+KIG + +++++I LLR+Y DIFAWSY+DMPGL IV+HR+P PEC PV+QKLRR
Sbjct: 1026 VKIGTGITAPIREELIILLRDYQDIFAWSYQDMPGLSSDIVQHRLPLNPECSPVKQKLRR 1205
Query: 1097 THPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIVPVP 1134
P+ +LKIK EV+K DAGFL YP+WVANIVP+P
Sbjct: 1206 MKPETSLKIKEEVKK*FDAGFLAVARYPKWVANIVPIP 1319
>BI498328
Length = 335
Score = 123 bits (309), Expect = 7e-28
Identities = 64/117 (54%), Positives = 79/117 (66%)
Frame = +1
Query: 1492 TQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSKWGLV 1551
TQKA+KGS LAD+LA PL Y+P+ +FPDE+IM L + IN KW +
Sbjct: 4 TQKAVKGSALADYLAQ*PLQGYRPMHPEFPDEDIMALFEEKRTHEDIN-------KWIVC 162
Query: 1552 FDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIK 1608
FDGA NA G G+GAV+VSP IPFTAR+ F+CTNNMAEYEAC G++ AID +K
Sbjct: 163 FDGASNALGHGVGAVLVSPDDQCIPFTARLGFDCTNNMAEYEACALGVQAAIDFDVK 333
>BG839293
Length = 781
Score = 110 bits (275), Expect = 7e-24
Identities = 49/110 (44%), Positives = 76/110 (68%), Gaps = 2/110 (1%)
Frame = +1
Query: 985 NFDFPVYEAEDEEGDDI--PYEITRLLEQEKKAIQPHQEEIELINIGTEENKQEIKIGAT 1042
NF+ + EDE +D+ P E+ R++ E + + PHQEE EL+++G K+E+KIG
Sbjct: 400 NFEQETSQTEDEGNEDVGLPPELERMVAHEDQEMGPHQEETELVDLGIGSGKREVKIGTG 579
Query: 1043 LEEGVKQKVIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQ 1092
+ +++++I LL++Y DIFAWSY+DMPGL IV+H++P PEC PV+Q
Sbjct: 580 ITAPIREELIILLKDYQDIFAWSYQDMPGLSSDIVQHQLPLNPECSPVKQ 729
>AW184779
Length = 432
Score = 109 bits (273), Expect = 1e-23
Identities = 47/74 (63%), Positives = 59/74 (79%)
Frame = +1
Query: 1750 LDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAME 1809
L +ILYKRN+DMVLLRCVD EAEQ++ +VH+G+FGTHA H M++K+LR GYYW+ ME
Sbjct: 1 LSRNILYKRNHDMVLLRCVDAREAEQMLVEVHEGSFGTHANIHAMAQKILRVGYYWLTME 180
Query: 1810 HDCYQYARKCHKCQ 1823
DC + KCHKCQ
Sbjct: 181 SDCCIHVWKCHKCQ 222
Score = 84.7 bits (208), Expect = 4e-16
Identities = 50/114 (43%), Positives = 60/114 (51%), Gaps = 22/114 (19%)
Frame = +3
Query: 1802 GYYWMAMEHDCY------------QYA-RKCHKCQIYADKIHVPPHALNVMSSPWPF--- 1845
G W +H C+ Y R H C + VP +M +P P+
Sbjct: 99 GILWNTCQHTCHGPEDSESGVLLAHYGERLLHPC---VEMP*VPVRPSLIMLTPHPYL*M 269
Query: 1846 ------SMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAK 1893
MWGID+IG IEPKASNGH FILVAIDYFTKWVEA SY +VT+ VV +
Sbjct: 270 SWQHLGHMWGIDVIGAIEPKASNGHHFILVAIDYFTKWVEAVSYASVTRSVVIR 431
>BI316922
Length = 405
Score = 99.8 bits (247), Expect = 1e-20
Identities = 46/135 (34%), Positives = 80/135 (59%)
Frame = +3
Query: 1779 DVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNV 1838
++H G G H+ M+ ++LR GYY M C +Y +KC +C + + H+ L+
Sbjct: 3 EMHRGICGMHSKSQLMTTRVLRVGYY**TMRKYCTEYVKKCEEC*KFGNISHLLVEELHN 182
Query: 1839 MSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNN 1898
+ +PWPF++ G+D++ R P + +++LV ID FTKW+E ++ V KF+ N
Sbjct: 183 IVAPWPFAI*GVDIL-RPFPLSKRQVKYLLVGIDQFTKWIETEHIAIISIANVRKFV*RN 359
Query: 1899 IICRYGVPSKIITDN 1913
I+C +G+P+ +I+DN
Sbjct: 360 IVC*FGIPNTLISDN 404
>BE804087
Length = 160
Score = 82.8 bits (203), Expect = 1e-15
Identities = 38/53 (71%), Positives = 44/53 (82%)
Frame = +2
Query: 1948 EAANKNIKRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEA 2000
EAANKNIK+ + KM +YKDWHEM +ALH YRT VR+STGATP+SLVYG EA
Sbjct: 2 EAANKNIKKNI*KMTVSYKDWHEMFSFALHMYRTLVRTSTGATPYSLVYGKEA 160
>BI321666
Length = 430
Score = 80.1 bits (196), Expect = 9e-15
Identities = 44/129 (34%), Positives = 71/129 (54%), Gaps = 3/129 (2%)
Frame = +2
Query: 1794 MSRKLLRAGYYWMAMEHDCYQYARKCHKCQ---IYADKIHVPPHALNVMSSPWPFSMWGI 1850
+S +L++ +Y ++ D Y +A+ C+KCQ + + +P H + + F WGI
Sbjct: 2 ISTNVLQSRFYLPSIFKDAYVHAQSCNKCQRTRSVSKRNELPLHTILEVEI---FDYWGI 172
Query: 1851 DMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKII 1910
D +G P SN +ILV +DY +KWVEA + ++V KF+K I R GVP +I
Sbjct: 173 DFVGPFPPSFSN--EYILVVVDYVSKWVEAVACQKSDAKIVIKFLKKQIFSRLGVPWVLI 346
Query: 1911 TDNGTNLNN 1919
+ G++L N
Sbjct: 347 DNGGSHLCN 373
>TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%)
Length = 589
Score = 62.8 bits (151), Expect(2) = 2e-14
Identities = 42/171 (24%), Positives = 74/171 (42%)
Frame = +1
Query: 1309 REMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIK 1368
R P ++ +R F G ++ RF+ + + P+ +L++KN W ++ ++AF +K
Sbjct: 88 RMAPTLKSVGDIRSFHGLASFYRRFVPNFSTVASPLNELVKKNMAFTWGEKQEQAFALLK 267
Query: 1369 NYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRY 1428
L + P+L P + + + VL Q H I Y S+K Y
Sbjct: 268 EKLTKAPVLALPDFSKTFELECDASGVGVRAVLLQGG------HPIAYFSEKLHSATLNY 429
Query: 1429 TMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARW 1479
+K AL A + H+LV + S +KYI K+ + + A+W
Sbjct: 430 PTYDKELYALIRAPQTWEHFLVCKEFVIHSDHQSLKYIRGKSKLNKRHAKW 582
Score = 36.6 bits (83), Expect(2) = 2e-14
Identities = 12/25 (48%), Positives = 21/25 (84%)
Frame = +2
Query: 1290 GFIVSQKGIEVDPDKVRAIREMPAP 1314
GF+V + G+++DP+K++AI+E P P
Sbjct: 29 GFVVGRNGVQMDPEKIKAIQEWPPP 103
>BE660092 weakly similar to GP|9884624|dbj retroelement pol polyprotein-like
{Arabidopsis thaliana}, partial (13%)
Length = 378
Score = 78.2 bits (191), Expect = 4e-14
Identities = 41/122 (33%), Positives = 71/122 (57%), Gaps = 1/122 (0%)
Frame = -3
Query: 1922 VQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVT-TYKDWHEMLPYALHGYR 1980
+ AL +++ + H S+PY PQ NG E +N+ IKRI++K+V + KDW L AL +R
Sbjct: 376 MHALLKKYGVVHRVSTPYHPQTNGQAEISNREIKRILEKIVQPSRKDWSTRLDDALWAHR 197
Query: 1981 TTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRM 2040
T ++ G +P+ +V+G LP+E+E + + S + + R QL+ ++E R+
Sbjct: 196 TAYKAPIGMSPYRVVFGKACHLPVEIEHKAYWAVKTCNFSMDQAGEERKLQLSELDEIRL 17
Query: 2041 DA 2042
+A
Sbjct: 16 EA 11
>BE802896
Length = 416
Score = 65.9 bits (159), Expect = 2e-10
Identities = 39/128 (30%), Positives = 61/128 (47%)
Frame = -2
Query: 1323 FLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKNYLLEPPILVPPVE 1382
FLG + RFI P+ LL+K +ND+C+ AFD +K L+ PI+ P
Sbjct: 412 FLGHAGFYRRFIRDFRKVALPLSNLLQKEVEFDFNDKCK*AFDCLKRALITTPIIQAPDW 233
Query: 1383 GRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAA 1442
P + + ++G VL Q+ + K IYY S+ + YT EK A+ +A
Sbjct: 232 TAPFELMCDASNYALGVVLAQKID--KLPRVIYYSSRTLDAAQANYTTTEKELLAIVFAL 59
Query: 1443 KRLRHYLV 1450
++ YL+
Sbjct: 58 EKFHSYLL 35
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.340 0.149 0.494
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,559,495
Number of Sequences: 63676
Number of extensions: 1520914
Number of successful extensions: 11621
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 11114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11601
length of query: 2129
length of database: 12,639,632
effective HSP length: 112
effective length of query: 2017
effective length of database: 5,507,920
effective search space: 11109474640
effective search space used: 11109474640
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 67 (30.4 bits)
Medicago: description of AC139745.5