TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139744.1 + phase: 0 
         (48 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC211446 similar to UP|Q739R6 (Q739R6) MutT/nudix family protein...    28  1.0
TC215863 weakly similar to UP|Q70LK1 (Q70LK1) NADH5 protein, par...    25  8.7
BM523428                                                               25  8.7

>TC211446 similar to UP|Q739R6 (Q739R6) MutT/nudix family protein, partial
           (6%)
          Length = 893

 Score = 28.1 bits (61), Expect = 1.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 2   FFHASFFSLLQSSNLLSAVLCLVKELDYPSLEVV 35
           F H+ FFSL  + NLL+ V+   KE+ +   E +
Sbjct: 837 FIHSHFFSLYFTLNLLTLVMQETKEITWDDSETI 736


>TC215863 weakly similar to UP|Q70LK1 (Q70LK1) NADH5 protein, partial (3%)
          Length = 473

 Score = 25.0 bits (53), Expect = 8.7
 Identities = 12/32 (37%), Positives = 19/32 (58%), Gaps = 1/32 (3%)
 Frame = +2

Query: 2  FFHASFFSLLQ-SSNLLSAVLCLVKELDYPSL 32
          + +  FF+L   S NLLS+ + L   LD+P +
Sbjct: 2  YLYVQFFALTSFSKNLLSSSISLCLNLDFPPI 97


>BM523428 
          Length = 430

 Score = 25.0 bits (53), Expect = 8.7
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +1

Query: 6   SFFSLLQSSNLLSAVLCLVKELDYPSLEVVEMAVKCRMDELE 47
           S  + L  + L++++   VKEL+  + +++     CR  E+E
Sbjct: 91  SMATQLSDAELITSLQARVKELETENAKLLSQLADCRSHEME 216


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.327    0.137    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,380,204
Number of Sequences: 63676
Number of extensions: 22819
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of query: 48
length of database: 12,639,632
effective HSP length: 24
effective length of query: 24
effective length of database: 11,111,408
effective search space: 266673792
effective search space used: 266673792
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)