TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139601.8 - phase: 0 
         (268 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC218296                                                              451  e-127
TC212252                                                              286  2e-84
BE802507 weakly similar to GP|20197209|gb expressed protein {Ara...   244  2e-65
CD404381 similar to GP|20197209|gb| expressed protein {Arabidops...   106  2e-27
TC206968 similar to UP|Q9LDF0 (Q9LDF0) ESTs AU086027(S2303), par...    55  3e-08
TC209059 similar to UP|Q9LTK1 (Q9LTK1) Arabidopsis thaliana geno...    30  1.1
TC204572 similar to UP|Q8L934 (Q8L934) Nucleoid DNA-binding-like...    30  1.5
TC228021 similar to PIR|T02543|T02543 aldehyde dehydrogenase hom...    28  4.3
AI794650 similar to PIR|T02543|T02 aldehyde dehydrogenase homolo...    28  5.6
TC231955 similar to UP|Q6NLW5 (Q6NLW5) At5g48720, partial (9%)         28  5.6
TC203416 similar to UP|Q84TF0 (Q84TF0) At2g37790, partial (87%)        27  7.4
TC221316 similar to UP|Q6ICY4 (Q6ICY4) At3g12100, partial (44%)        27  9.6

>TC218296 
          Length = 1248

 Score =  451 bits (1160), Expect = e-127
 Identities = 215/268 (80%), Positives = 244/268 (90%)
 Frame = +3

Query: 1   MGHLYALDFDGVLCDTCGETAISALKAAKLRWPDLFGSVDSSTEDWIVEQMIKVRPVVET 60
           MG LYALDFDGV+CD+CGE+++SALKAAK+RWP LF  VDS+TE+WI++QM  VRPVVET
Sbjct: 60  MGELYALDFDGVICDSCGESSLSALKAAKVRWPGLFDGVDSTTENWIIDQMHTVRPVVET 239

Query: 61  GYETLLLVRLLLETRVPSIRKSSVAEGLTVEGILEDWFKLKPIVMEEWNENRDDLIDLFG 120
           GYE +LLVRLLLE+R P+IRKSSVAEGLTVEGILE+W KLKPI+MEEW+E RDDLIDLFG
Sbjct: 240 GYENVLLVRLLLESRTPTIRKSSVAEGLTVEGILENWSKLKPIIMEEWDEKRDDLIDLFG 419

Query: 121 KVRDDWLENDFAGWIQGNRFYPGVADALRFASSKVYIVTTKQGRFADALLRELAGITIPP 180
           KVRD+WLE DFA WI  NR YPGV+DAL+FASS+VYIVTTKQ RFADALLRELAG+TIPP
Sbjct: 420 KVRDEWLEQDFATWIGANRLYPGVSDALKFASSRVYIVTTKQSRFADALLRELAGVTIPP 599

Query: 181 ERIYGLGTGPKVETLKKLQKMPEHQGLTLHFVEDRIAALKNVIKEPELDNWNLYLVNWGF 240
           ERIYGLGTGPKVE LK+LQK PEHQGLTLHFVEDR+A LKNVIKEPELD WNLYL NWG+
Sbjct: 600 ERIYGLGTGPKVEVLKQLQKKPEHQGLTLHFVEDRLATLKNVIKEPELDQWNLYLGNWGY 779

Query: 241 NTQKERDEAAANPRIQLIDLSDFSSKLK 268
           NTQKER+EAAA PRI +++LS+FS KLK
Sbjct: 780 NTQKEREEAAAIPRIHVLELSNFSKKLK 863


>TC212252 
          Length = 931

 Score =  286 bits (733), Expect(2) = 2e-84
 Identities = 137/156 (87%), Positives = 145/156 (92%)
 Frame = +3

Query: 113 DDLIDLFGKVRDDWLENDFAGWIQGNRFYPGVADALRFASSKVYIVTTKQGRFADALLRE 172
           ++LIDLFGKVRDDWLE DF GWI  NR YPG ADALRFASSKVYIVTTKQ RFADALLRE
Sbjct: 63  EELIDLFGKVRDDWLERDFTGWIGANRLYPGTADALRFASSKVYIVTTKQSRFADALLRE 242

Query: 173 LAGITIPPERIYGLGTGPKVETLKKLQKMPEHQGLTLHFVEDRIAALKNVIKEPELDNWN 232
           LAG+TI PER+YGLGTGPKVE LKKLQKMPEHQGLTLHFVEDR+A LKNVIKEPELDNWN
Sbjct: 243 LAGVTIAPERLYGLGTGPKVEVLKKLQKMPEHQGLTLHFVEDRLATLKNVIKEPELDNWN 422

Query: 233 LYLVNWGFNTQKERDEAAANPRIQLIDLSDFSSKLK 268
           LYLVNWGFNTQKER+EA ANPRIQ+I+LSDFSSKLK
Sbjct: 423 LYLVNWGFNTQKEREEAQANPRIQVIELSDFSSKLK 530



 Score = 43.9 bits (102), Expect(2) = 2e-84
 Identities = 17/19 (89%), Positives = 19/19 (99%)
 Frame = +2

Query: 93  ILEDWFKLKPIVMEEWNEN 111
           ILE+WFKLKPI+MEEWNEN
Sbjct: 2   ILENWFKLKPIIMEEWNEN 58


>BE802507 weakly similar to GP|20197209|gb expressed protein {Arabidopsis
           thaliana}, partial (52%)
          Length = 484

 Score =  244 bits (624), Expect = 2e-65
 Identities = 120/162 (74%), Positives = 135/162 (83%)
 Frame = +2

Query: 7   LDFDGVLCDTCGETAISALKAAKLRWPDLFGSVDSSTEDWIVEQMIKVRPVVETGYETLL 66
           LDFDGV+CD+CGETAISALKAAKLRWP LF  VDS+ EDWIV+ MI VRPVVETGYETLL
Sbjct: 2   LDFDGVICDSCGETAISALKAAKLRWPPLFDGVDSTIEDWIVDHMITVRPVVETGYETLL 181

Query: 67  LVRLLLETRVPSIRKSSVAEGLTVEGILEDWFKLKPIVMEEWNENRDDLIDLFGKVRDDW 126
           L RLLLETRVPSIRKSSV+EGL VE ILE+WFKLKP++ME+W+ENR++LIDLFGKVRDDW
Sbjct: 182 LARLLLETRVPSIRKSSVSEGLKVEDILENWFKLKPLIMEDWHENREELIDLFGKVRDDW 361

Query: 127 LENDFAGWIQGNRFYPGVADALRFASSKVYIVTTKQGRFADA 168
           LE D  G I     YPG A AL    + +Y+VTT Q RFADA
Sbjct: 362 LERDLTGSIGAYTLYPGTAGALNMTLT-MYVVTTPQSRFADA 484


>CD404381 similar to GP|20197209|gb| expressed protein {Arabidopsis
           thaliana}, partial (25%)
          Length = 420

 Score =  106 bits (264), Expect(2) = 2e-27
 Identities = 59/99 (59%), Positives = 62/99 (62%), Gaps = 31/99 (31%)
 Frame = -2

Query: 168 ALLRELAGITIPPERIYGLGTGPKVETLKKLQKMPEHQGLTLH----------------- 210
           ALLRELAG+TI PER+YGLGTGPKVE LKKLQKMPEHQGLTL                  
Sbjct: 419 ALLRELAGVTIAPERLYGLGTGPKVEVLKKLQKMPEHQGLTLQLRYCAFRGYFI*YILC* 240

Query: 211 --------------FVEDRIAALKNVIKEPELDNWNLYL 235
                         FVE R+A LKNVIKEPELDNWNL L
Sbjct: 239 GGL*EIN*S*FTTSFVEARLATLKNVIKEPELDNWNLNL 123



 Score = 33.5 bits (75), Expect(2) = 2e-27
 Identities = 13/14 (92%), Positives = 14/14 (99%)
 Frame = -1

Query: 235 LVNWGFNTQKERDE 248
           LVNWGFNTQKER+E
Sbjct: 42  LVNWGFNTQKEREE 1


>TC206968 similar to UP|Q9LDF0 (Q9LDF0) ESTs AU086027(S2303), partial (9%)
          Length = 1045

 Score = 55.1 bits (131), Expect = 3e-08
 Identities = 25/36 (69%), Positives = 30/36 (82%)
 Frame = +2

Query: 233 LYLVNWGFNTQKERDEAAANPRIQLIDLSDFSSKLK 268
           L L NWG+NTQKER+E AA PRI +++LSDFS KLK
Sbjct: 488 LELGNWGYNTQKEREEVAAIPRIHVLELSDFSKKLK 595



 Score = 51.6 bits (122), Expect = 4e-07
 Identities = 23/28 (82%), Positives = 25/28 (89%)
 Frame = +1

Query: 162 QGRFADALLRELAGITIPPERIYGLGTG 189
           Q RFADA +RELA +TIPPERIYGLGTG
Sbjct: 415 QSRFADAFIRELAEVTIPPERIYGLGTG 498


>TC209059 similar to UP|Q9LTK1 (Q9LTK1) Arabidopsis thaliana genomic DNA,
           chromosome 5, BAC clone:F17P19, partial (84%)
          Length = 808

 Score = 30.0 bits (66), Expect = 1.1
 Identities = 18/48 (37%), Positives = 24/48 (49%)
 Frame = +3

Query: 167 DALLRELAGITIPPERIYGLGTGPKVETLKKLQKMPEHQGLTLHFVED 214
           D L+ ELA +     R++  G G +   LK L     H GL+ HFV D
Sbjct: 111 DLLVTELASVASQNGRVFLYGVGREGLMLKALCMRLFHLGLSAHFVFD 254


>TC204572 similar to UP|Q8L934 (Q8L934) Nucleoid DNA-binding-like protein,
           partial (61%)
          Length = 1118

 Score = 29.6 bits (65), Expect = 1.5
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +3

Query: 147 ALRFASSKVYIVTTKQGRFADALLRELAGITIPPERIYGLGTGPKVETLKKLQKM 201
           A       V + T     +A   ++++ G ++PP+ + GLG GP +  L + QK+
Sbjct: 90  AASLVQDTVTLATDPVPAYAFGCIQKVTGSSVPPQGLLGLGRGP-LSLLAQTQKL 251


>TC228021 similar to PIR|T02543|T02543 aldehyde dehydrogenase homolog
           At2g37770 - Arabidopsis thaliana {Arabidopsis thaliana;}
           , partial (98%)
          Length = 1119

 Score = 28.1 bits (61), Expect = 4.3
 Identities = 22/79 (27%), Positives = 36/79 (44%), Gaps = 20/79 (25%)
 Frame = +3

Query: 208 TLHFVEDRIAALKNVIKEPELDNWNLYLVNW---------GF-----------NTQKERD 247
           T H  ED   AL   +++ +LD  +LYL++W         GF           NT K  +
Sbjct: 249 TDHAPEDVPEALDRTLRDLQLDYIDLYLIHWPIRMKKGSVGFKAENIVPSDIPNTWKAME 428

Query: 248 EAAANPRIQLIDLSDFSSK 266
               + + + I +S+FS+K
Sbjct: 429 ALNKSGKARAIGVSNFSTK 485


>AI794650 similar to PIR|T02543|T02 aldehyde dehydrogenase homolog At2g37770
           - Arabidopsis thaliana, partial (45%)
          Length = 431

 Score = 27.7 bits (60), Expect = 5.6
 Identities = 13/31 (41%), Positives = 19/31 (60%)
 Frame = +1

Query: 208 TLHFVEDRIAALKNVIKEPELDNWNLYLVNW 238
           T H  ED   AL   +K+ +LD  +LYL++W
Sbjct: 283 TDHAPEDVPLALDRTLKDLQLDYVDLYLIHW 375


>TC231955 similar to UP|Q6NLW5 (Q6NLW5) At5g48720, partial (9%)
          Length = 731

 Score = 27.7 bits (60), Expect = 5.6
 Identities = 15/52 (28%), Positives = 30/52 (56%)
 Frame = +1

Query: 176 ITIPPERIYGLGTGPKVETLKKLQKMPEHQGLTLHFVEDRIAALKNVIKEPE 227
           IT    R +G+G G ++   K +  M  H+G  + F++ +I  L +++K+P+
Sbjct: 214 ITAMTTRSHGIGIG-RIIVSKGVSIMKFHKGYGMEFLKMKIFPLCSMMKQPQ 366


>TC203416 similar to UP|Q84TF0 (Q84TF0) At2g37790, partial (87%)
          Length = 1225

 Score = 27.3 bits (59), Expect = 7.4
 Identities = 12/29 (41%), Positives = 18/29 (61%)
 Frame = +1

Query: 210 HFVEDRIAALKNVIKEPELDNWNLYLVNW 238
           H  ED   AL   ++E +LD  +LYL++W
Sbjct: 274 HAPEDVPKALDKTLQELQLDYLDLYLIHW 360


>TC221316 similar to UP|Q6ICY4 (Q6ICY4) At3g12100, partial (44%)
          Length = 670

 Score = 26.9 bits (58), Expect = 9.6
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 234 YLVNW-GFNTQKERDEAAANPRI 255
           +L  W  +NT KERDE +AN RI
Sbjct: 390 WLCGWFTYNTGKERDERSANTRI 458


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.319    0.139    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,189,572
Number of Sequences: 63676
Number of extensions: 138390
Number of successful extensions: 705
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of query: 268
length of database: 12,639,632
effective HSP length: 96
effective length of query: 172
effective length of database: 6,526,736
effective search space: 1122598592
effective search space used: 1122598592
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)