TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139600.9 - phase: 0 /pseudo
         (145 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW760164 similar to GP|11994422|dbj oxidoreductase  short-chain ...    91  2e-19
CA937893 similar to GP|20805072|dbj retrovirus-related pol polyp...    54  3e-08
CF922226                                                               54  3e-08
CA802758                                                               29  0.90
TC221311                                                               28  1.5
TC209673 weakly similar to UP|Q9FMU9 (Q9FMU9) Similarity to ATFP...    27  3.4
TC231404 similar to UP|Q9SK61 (Q9SK61) Expressed protein, partia...    27  4.5
TC230168                                                               26  5.9
BM891343                                                               26  5.9

>AW760164 similar to GP|11994422|dbj oxidoreductase  short-chain
           dehydrogenase/reductase family-like protein {Arabidopsis
           thaliana}, partial (9%)
          Length = 428

 Score = 90.9 bits (224), Expect = 2e-19
 Identities = 47/91 (51%), Positives = 65/91 (70%), Gaps = 1/91 (1%)
 Frame = +3

Query: 2   MGS-KWDIEKFTGDNDFGLLKVKMEAMLIQQKCEKALKGKGSLPVTMSRAEKTEMVDKAR 60
           MGS K+++EKFTG NDFGL  +KM A+L+QQ   +AL G+  L   M+  +K  ++ KA 
Sbjct: 75  MGSAKYEVEKFTGQNDFGLC*LKMRALLVQQGLVEALDGEIKLEKMMADGDKKALLQKAY 254

Query: 61  SVIVLCLGDKVLRKVAKESTAASMWPKLEAL 91
           + I+L LGDKVLR+V+KE+TA  +W KLE L
Sbjct: 255 NAIILSLGDKVLRQVSKETTAVGVWSKLEVL 347


>CA937893 similar to GP|20805072|dbj retrovirus-related pol polyprotein from
           transposon TNT 1-94-like, partial (7%)
          Length = 412

 Score = 53.5 bits (127), Expect = 3e-08
 Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
 Frame = -2

Query: 3   GSKWDIEKFTGDNDFGLLKVKMEAMLIQQKCEKALKGKGSLPVTMSRAEKTEMVD----- 57
           G+K+++ KF G  +F L + +++ +L  Q   K L+         S++  TE +D     
Sbjct: 315 GAKFEVGKFDGTGNFRLWQKRVKDLLA*QGLLKVLRD--------SKSNNTEALDWEEL* 160

Query: 58  -KARSVIVLCLGDKVLRKVAKESTAASMWPKLEALYMTKSLTHQQFLKQ*LY 108
            +  + I LCL D+ L  + + +    +W KLE+ YM KSLT++ +L Q LY
Sbjct: 159 ERTATTIRLCLVDEFLYHMMELAFPGEVWKKLESQYMLKSLTNKLYLMQKLY 4


>CF922226 
          Length = 667

 Score = 53.5 bits (127), Expect = 3e-08
 Identities = 27/51 (52%), Positives = 38/51 (73%)
 Frame = -3

Query: 93  MTKSLTHQQFLKQ*LYSFKMVKSKAIMELLVEFNKIIGDLENIEVRLEDVD 143
           MTKSL ++ + KQ LYSFKM + +++ E L  FNK+I DLENI+V ++D D
Sbjct: 665 MTKSLVNRLYXKQSLYSFKMHEDRSVGEQLDLFNKLILDLENIDVTIDDED 513


>CA802758 
          Length = 411

 Score = 28.9 bits (63), Expect = 0.90
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = +3

Query: 19  LLKVKMEAMLIQQKCEKALKG-KGSLPVTM-SRAEKTEMVDKARSVIVLCLGDKVLRKVA 76
           +LKV M      +K  KALKG +G   VT  S+A K  +  KA   I +C  +++ +K  
Sbjct: 192 VLKVDMHCEACARKVAKALKGFEGVEEVTADSKASKVVVKGKAADPIKVC--ERLQKKSG 365

Query: 77  KESTAASMWPK 87
           K+    S  PK
Sbjct: 366 KKVELISPLPK 398


>TC221311 
          Length = 769

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 15/37 (40%), Positives = 22/37 (58%), Gaps = 4/37 (10%)
 Frame = -2

Query: 85  WPKLEA----LYMTKSLTHQQFLKQ*LYSFKMVKSKA 117
           WPK EA    L+MT  ++ Q F +Q*+Y+F +    A
Sbjct: 624 WPKSEAGKVHLFMTPIISEQFF*QQ*IYTFTIQNKSA 514


>TC209673 weakly similar to UP|Q9FMU9 (Q9FMU9) Similarity to ATFP3, partial
           (27%)
          Length = 650

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 24/71 (33%), Positives = 35/71 (48%), Gaps = 2/71 (2%)
 Frame = +3

Query: 19  LLKVKMEAMLIQQKCEKALKG-KGSLPVTM-SRAEKTEMVDKARSVIVLCLGDKVLRKVA 76
           +LKV M      +K  KALKG +G   V+  SR  K  +  KA   I +C  +++ +K  
Sbjct: 345 VLKVDMHCEACARKVAKALKGFQGVEEVSADSRTSKVVVKGKAADPIKVC--ERLQKKSG 518

Query: 77  KESTAASMWPK 87
           K+    S  PK
Sbjct: 519 KKVELISPLPK 551


>TC231404 similar to UP|Q9SK61 (Q9SK61) Expressed protein, partial (36%)
          Length = 505

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 82  ASMWPKLEALYMTKSLTHQQFL 103
           AS+ PK+E+L    SL+HQQ +
Sbjct: 108 ASLHPKIESLVRPPSLSHQQII 43


>TC230168 
          Length = 863

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 11/36 (30%), Positives = 21/36 (57%)
 Frame = -3

Query: 21  KVKMEAMLIQQKCEKALKGKGSLPVTMSRAEKTEMV 56
           ++   A++IQ  C+++LKG  +L  T    + TE +
Sbjct: 441 RMSQNAVMIQALCQRSLKGSVALKYTSYPIQATEEI 334


>BM891343 
          Length = 418

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 60  RSVIVLCLGDKVLRKVAKESTAASMWPKLEAL 91
           ++V +  +G KV   + K STA+  WP L+++
Sbjct: 416 KTVYIFTVGGKVCLFLLKTSTASLTWPYLQSV 321


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.322    0.135    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,433,109
Number of Sequences: 63676
Number of extensions: 39971
Number of successful extensions: 151
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of query: 145
length of database: 12,639,632
effective HSP length: 88
effective length of query: 57
effective length of database: 7,036,144
effective search space: 401060208
effective search space used: 401060208
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)