BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139600.2 + phase: 0
(98 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC203298 UP|CB23_SOYBN (P09756) Chlorophyll a-b binding protein ... 192 3e-50
CD395422 192 3e-50
TC203286 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/... 192 3e-50
CD411090 192 3e-50
TC203341 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/... 192 3e-50
CD391767 GP|1053216|gb chlorophyll a/b-binding protein {Glycine ... 192 3e-50
TC203567 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/... 192 3e-50
TC203719 homologue to UP|Q43437 (Q43437) Photosystem II type I c... 192 3e-50
TC225132 UP|Q39831 (Q39831) Chlorophyll a/b-binding protein, com... 192 3e-50
TC203607 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/... 192 3e-50
TC203649 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/... 192 3e-50
TC203280 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/... 190 1e-49
CD396791 187 6e-49
TC203663 UP|CB21_CUCSA (P08221) Chlorophyll a-b binding protein ... 186 2e-48
CD395698 186 2e-48
CD391774 186 2e-48
CD395464 185 3e-48
CD392042 184 5e-48
TC203746 UP|CB22_SOYBN (P09755) Chlorophyll a-b binding protein ... 182 2e-47
CD411168 182 2e-47
>TC203298 UP|CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloroplast
precursor (LHCII type I CAB-3) (LHCP), complete
Length = 1518
Score = 192 bits (487), Expect = 3e-50
Identities = 91/98 (92%), Positives = 95/98 (96%)
Frame = +2
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYRIA GPLGEV DP+YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF
Sbjct: 1016 MGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 1195
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
FVQAIVT KGPLENLADH+ADPVN+NAWA+ATNFVPGK
Sbjct: 1196 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 1309
>CD395422
Length = 658
Score = 192 bits (487), Expect = 3e-50
Identities = 91/98 (92%), Positives = 95/98 (96%)
Frame = -1
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYRIA GPLGEV DP+YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF
Sbjct: 436 MGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 257
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
FVQAIVT KGPLENLADH+ADPVN+NAWA+ATNFVPGK
Sbjct: 256 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 143
>TC203286 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/b-binding
protein precursor, partial (77%)
Length = 739
Score = 192 bits (487), Expect = 3e-50
Identities = 91/98 (92%), Positives = 95/98 (96%)
Frame = +3
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYRIA GPLGEV DP+YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF
Sbjct: 315 MGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 494
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
FVQAIVT KGPLENLADH+ADPVN+NAWA+ATNFVPGK
Sbjct: 495 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 608
>CD411090
Length = 533
Score = 192 bits (487), Expect = 3e-50
Identities = 91/98 (92%), Positives = 95/98 (96%)
Frame = -1
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYRIA GPLGEV DP+YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF
Sbjct: 413 MGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 234
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
FVQAIVT KGPLENLADH+ADPVN+NAWA+ATNFVPGK
Sbjct: 233 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 120
>TC203341 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/b-binding
protein precursor, partial (53%)
Length = 1569
Score = 192 bits (487), Expect = 3e-50
Identities = 91/98 (92%), Positives = 95/98 (96%)
Frame = +3
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYRIA GPLGEV DP+YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF
Sbjct: 672 MGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 851
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
FVQAIVT KGPLENLADH+ADPVN+NAWA+ATNFVPGK
Sbjct: 852 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 965
>CD391767 GP|1053216|gb chlorophyll a/b-binding protein {Glycine max},
partial (38%)
Length = 550
Score = 192 bits (487), Expect = 3e-50
Identities = 91/98 (92%), Positives = 95/98 (96%)
Frame = -2
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYRIA GPLGEV DP+YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF
Sbjct: 420 MGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 241
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
FVQAIVT KGPLENLADH+ADPVN+NAWA+ATNFVPGK
Sbjct: 240 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 127
>TC203567 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/b-binding
protein precursor, partial (52%)
Length = 1448
Score = 192 bits (487), Expect = 3e-50
Identities = 91/98 (92%), Positives = 95/98 (96%)
Frame = +2
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYRIA GPLGEV DP+YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF
Sbjct: 1019 MGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 1198
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
FVQAIVT KGPLENLADH+ADPVN+NAWA+ATNFVPGK
Sbjct: 1199 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 1312
>TC203719 homologue to UP|Q43437 (Q43437) Photosystem II type I chlorophyll
a/b-binding protein precursor, partial (69%)
Length = 908
Score = 192 bits (487), Expect = 3e-50
Identities = 91/98 (92%), Positives = 95/98 (96%)
Frame = +2
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYRIA GPLGEV DP+YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF
Sbjct: 479 MGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 658
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
FVQAIVT KGPLENLADH+ADPVN+NAWA+ATNFVPGK
Sbjct: 659 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 772
>TC225132 UP|Q39831 (Q39831) Chlorophyll a/b-binding protein, complete
Length = 1427
Score = 192 bits (487), Expect = 3e-50
Identities = 91/98 (92%), Positives = 95/98 (96%)
Frame = +1
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYRIA GPLGEV DP+YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF
Sbjct: 925 MGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 1104
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
FVQAIVT KGPLENLADH+ADPVN+NAWA+ATNFVPGK
Sbjct: 1105 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 1218
>TC203607 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/b-binding
protein precursor, partial (92%)
Length = 916
Score = 192 bits (487), Expect = 3e-50
Identities = 91/98 (92%), Positives = 95/98 (96%)
Frame = +3
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYRIA GPLGEV DP+YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF
Sbjct: 444 MGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 623
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
FVQAIVT KGPLENLADH+ADPVN+NAWA+ATNFVPGK
Sbjct: 624 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 737
>TC203649 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/b-binding
protein precursor, partial (74%)
Length = 777
Score = 192 bits (487), Expect = 3e-50
Identities = 91/98 (92%), Positives = 95/98 (96%)
Frame = +3
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYRIA GPLGEV DP+YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF
Sbjct: 297 MGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 476
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
FVQAIVT KGPLENLADH+ADPVN+NAWA+ATNFVPGK
Sbjct: 477 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 590
>TC203280 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/b-binding
protein precursor, partial (64%)
Length = 1094
Score = 190 bits (482), Expect = 1e-49
Identities = 90/98 (91%), Positives = 95/98 (96%)
Frame = +2
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYRIA GPLGEV DP+YPGGSF+PLGLADDPEAFAELKVKELKNGRLAMFSMFGF
Sbjct: 656 MGAVEGYRIAGGPLGEVTDPIYPGGSFNPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 835
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
FVQAIVT KGPLENLADH+ADPVN+NAWA+ATNFVPGK
Sbjct: 836 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 949
>CD396791
Length = 619
Score = 187 bits (476), Expect = 6e-49
Identities = 89/98 (90%), Positives = 94/98 (95%)
Frame = -2
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYRIA GPLGEV DP+YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF
Sbjct: 411 MGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 232
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
FVQAI+T KGPLENLADH+ADPVN+ AWA+ATNFVPGK
Sbjct: 231 FVQAILTGKGPLENLADHLADPVNNYAWAYATNFVPGK 118
>TC203663 UP|CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII
type I, chloroplast precursor (CAB) (LHCP) (Fragment),
partial (37%)
Length = 671
Score = 186 bits (472), Expect = 2e-48
Identities = 88/95 (92%), Positives = 92/95 (96%)
Frame = +1
Query: 4 VEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQ 63
VEGYRIA GPLGEV DP+YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQ
Sbjct: 268 VEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQ 447
Query: 64 AIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
AIVT KGPLENLADH+ADPVN+NAWA+ATNFVPGK
Sbjct: 448 AIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 552
>CD395698
Length = 570
Score = 186 bits (472), Expect = 2e-48
Identities = 88/95 (92%), Positives = 92/95 (96%)
Frame = -3
Query: 4 VEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQ 63
VEGYRIA GPLGEV DP+YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQ
Sbjct: 430 VEGYRIAGGPLGEVTDPMYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQ 251
Query: 64 AIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
AIVT KGPLENLADH+ADPVN+NAWA+ATNFVPGK
Sbjct: 250 AIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 146
>CD391774
Length = 610
Score = 186 bits (472), Expect = 2e-48
Identities = 88/95 (92%), Positives = 92/95 (96%)
Frame = -1
Query: 4 VEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQ 63
VEGYRIA GPLGEV DP+YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQ
Sbjct: 430 VEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQ 251
Query: 64 AIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
AIVT KGPLENLADH+ADPVN+NAWA+ATNFVPGK
Sbjct: 250 AIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 146
>CD395464
Length = 616
Score = 185 bits (470), Expect = 3e-48
Identities = 88/96 (91%), Positives = 92/96 (95%)
Frame = -2
Query: 3 AVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV 62
AVEGYRIA GPLGEV DP+YPG SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV
Sbjct: 408 AVEGYRIAGGPLGEVTDPIYPGASFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV 229
Query: 63 QAIVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
QAIVT KGPLENLADH+ADPVN+NAWA+ATNFVPGK
Sbjct: 228 QAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 121
>CD392042
Length = 645
Score = 184 bits (468), Expect = 5e-48
Identities = 87/94 (92%), Positives = 91/94 (96%)
Frame = -3
Query: 5 EGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQA 64
EGYRIA GPLGEV DP+YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQA
Sbjct: 376 EGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQA 197
Query: 65 IVTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
IVT KGPLENLADH+ADPVN+NAWA+ATNFVPGK
Sbjct: 196 IVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 95
>TC203746 UP|CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2,
chloroplast precursor (LHCII type I CAB-2) (LHCP),
complete
Length = 887
Score = 182 bits (463), Expect = 2e-47
Identities = 87/95 (91%), Positives = 91/95 (95%)
Frame = +2
Query: 1 MGAVEGYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 60
MGAVEGYRIA GPLGEV DP+YPGGSFDPLGLADDPEA AELKVKELKNGRLAMFSMFGF
Sbjct: 476 MGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGF 655
Query: 61 FVQAIVTEKGPLENLADHIADPVNSNAWAFATNFV 95
FVQAIVT KGPLENLADH+ADPVN+NAWA+ATNFV
Sbjct: 656 FVQAIVTGKGPLENLADHLADPVNNNAWAYATNFV 760
>CD411168
Length = 691
Score = 182 bits (463), Expect = 2e-47
Identities = 86/93 (92%), Positives = 90/93 (96%)
Frame = -1
Query: 6 GYRIADGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAI 65
GYRIA GPLGEV DP+YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAI
Sbjct: 421 GYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAI 242
Query: 66 VTEKGPLENLADHIADPVNSNAWAFATNFVPGK 98
VT KGPLENLADH+ADPVN+NAWA+ATNFVPGK
Sbjct: 241 VTGKGPLENLADHLADPVNNNAWAYATNFVPGK 143
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.141 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,991,875
Number of Sequences: 63676
Number of extensions: 25123
Number of successful extensions: 330
Number of sequences better than 10.0: 173
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of query: 98
length of database: 12,639,632
effective HSP length: 74
effective length of query: 24
effective length of database: 7,927,608
effective search space: 190262592
effective search space used: 190262592
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)
Medicago: description of AC139600.2