BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139600.10 + phase: 0
(81 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC226297 132 4e-32
TC226296 131 7e-32
TC226295 similar to UP|Q9U1G9 (Q9U1G9) Gly-rich protein, partial... 129 2e-31
TC209771 113 2e-26
TC231480 108 6e-25
TC230021 similar to UP|Q9ARE3 (Q9ARE3) ZF-HD homeobox protein, p... 82 5e-17
TC234017 similar to UP|Q9ARE0 (Q9ARE0) ZF-HD homeobox protein, p... 82 5e-17
TC216916 similar to UP|Q9ARE3 (Q9ARE3) ZF-HD homeobox protein, p... 79 4e-16
TC227151 similar to UP|Q9ARE4 (Q9ARE4) ZF-HD homeobox protein, p... 74 1e-14
TC211095 72 4e-14
CO984513 72 4e-14
TC234368 similar to UP|Q9ARE3 (Q9ARE3) ZF-HD homeobox protein, p... 72 4e-14
TC234945 similar to UP|Q9ARE3 (Q9ARE3) ZF-HD homeobox protein, p... 72 4e-14
BF069575 similar to GP|13277220|em ZF-HD homeobox protein {Flave... 72 5e-14
TC211006 similar to UP|Q9ARE4 (Q9ARE4) ZF-HD homeobox protein, p... 69 3e-13
TC225178 weakly similar to UP|POS5_YEAST (Q06892) POS5 protein, ... 67 2e-12
TC215084 similar to UP|Q9XHW0 (Q9XHW0) 10A19I.6, partial (22%) 65 5e-12
AW598597 similar to GP|16612295|gb| AT4g24660/F22K18_140 {Arabid... 62 5e-11
BF010438 55 8e-09
TC221327 similar to UP|Q9ARE4 (Q9ARE4) ZF-HD homeobox protein, p... 52 5e-08
>TC226297
Length = 1021
Score = 132 bits (331), Expect = 4e-32
Identities = 71/90 (78%), Positives = 74/90 (81%), Gaps = 9/90 (10%)
Frame = +3
Query: 1 MRKRQVVVRRSEDPQRSV--VKYGECQKNHAANVGGYAVDGCREFMPS------TNGSLT 52
MRKRQVVVRR E+PQRS VKYGECQKNHAANVGGYAVDGCREFM S T+ +LT
Sbjct: 198 MRKRQVVVRR-EEPQRSARTVKYGECQKNHAANVGGYAVDGCREFMASGATGEGTSAALT 374
Query: 53 CAACGCHRNFHKR-EVEVVSESSSPHSNGT 81
CAACGCHRNFHKR E EVVSE SSP SNGT
Sbjct: 375 CAACGCHRNFHKRQETEVVSECSSPTSNGT 464
>TC226296
Length = 819
Score = 131 bits (329), Expect = 7e-32
Identities = 72/94 (76%), Positives = 74/94 (78%), Gaps = 13/94 (13%)
Frame = +1
Query: 1 MRKRQVVVRRSEDPQRS---VVKYGECQKNHAANVGGYAVDGCREFMPSTNGS------- 50
MRKRQVVVRR E+PQRS VKYGECQKNHAANVGGYAVDGCREFM S +GS
Sbjct: 76 MRKRQVVVRR-EEPQRSGVRAVKYGECQKNHAANVGGYAVDGCREFMASGSGSGGGEGTS 252
Query: 51 --LTCAACGCHRNFHKR-EVEVVSESSSPHSNGT 81
LTCAACGCHRNFHKR E EVVSE SSP SNGT
Sbjct: 253 AALTCAACGCHRNFHKRQEAEVVSECSSPTSNGT 354
>TC226295 similar to UP|Q9U1G9 (Q9U1G9) Gly-rich protein, partial (5%)
Length = 505
Score = 129 bits (325), Expect = 2e-31
Identities = 72/98 (73%), Positives = 74/98 (75%), Gaps = 17/98 (17%)
Frame = +3
Query: 1 MRKRQVVVRRSEDPQRS---VVKYGECQKNHAANVGGYAVDGCREFMPSTNGS------- 50
MRKRQVVVRR E+PQRS VKYGECQKNHAANVGGYAVDGCREFM S +GS
Sbjct: 129 MRKRQVVVRR-EEPQRSGVRAVKYGECQKNHAANVGGYAVDGCREFMASGSGSGGGSGGG 305
Query: 51 ------LTCAACGCHRNFHKR-EVEVVSESSSPHSNGT 81
LTCAACGCHRNFHKR E EVVSE SSP SNGT
Sbjct: 306 EGTSAALTCAACGCHRNFHKRQEAEVVSECSSPTSNGT 419
>TC209771
Length = 404
Score = 113 bits (283), Expect = 2e-26
Identities = 58/87 (66%), Positives = 67/87 (76%), Gaps = 9/87 (10%)
Frame = +1
Query: 1 MRKRQVVVRRSEDPQRSV---VKYGECQKNHAANVGGYAVDGCREFMPST----NGSLTC 53
M+KRQVVV+ + SV ++YGECQKNHAAN+GGYAVDGCREFM ST G+LTC
Sbjct: 133 MKKRQVVVKSVANTSSSVMRNIRYGECQKNHAANIGGYAVDGCREFMASTGEGAGGALTC 312
Query: 54 AACGCHRNFHKREV--EVVSESSSPHS 78
AACGCHRNFH+REV EVV E S P+S
Sbjct: 313 AACGCHRNFHRREVNTEVVCEYSPPNS 393
>TC231480
Length = 647
Score = 108 bits (269), Expect = 6e-25
Identities = 52/74 (70%), Positives = 58/74 (78%), Gaps = 7/74 (9%)
Frame = +1
Query: 1 MRKRQVVVRR---SEDPQRSVVKYGECQKNHAANVGGYAVDGCREFMPS----TNGSLTC 53
M+KRQVVV+R + P ++YGECQKNHAAN GGYAVDGCREFM S TN +LTC
Sbjct: 298 MKKRQVVVKRDYATSSPAVGNIRYGECQKNHAANTGGYAVDGCREFMASAGEGTNAALTC 477
Query: 54 AACGCHRNFHKREV 67
AACGCHRNFHKREV
Sbjct: 478 AACGCHRNFHKREV 519
>TC230021 similar to UP|Q9ARE3 (Q9ARE3) ZF-HD homeobox protein, partial (19%)
Length = 986
Score = 82.0 bits (201), Expect = 5e-17
Identities = 37/59 (62%), Positives = 44/59 (73%), Gaps = 6/59 (10%)
Frame = +2
Query: 14 PQRSVVKYGECQKNHAANVGGYAVDGCREFMPSTN------GSLTCAACGCHRNFHKRE 66
P VV Y EC KNHAA++GG+A+DGC EFMPS++ SL CAACGCHRNFH+RE
Sbjct: 428 PPSMVVSYKECLKNHAASIGGHALDGCGEFMPSSSTVPSDPRSLKCAACGCHRNFHRRE 604
>TC234017 similar to UP|Q9ARE0 (Q9ARE0) ZF-HD homeobox protein, partial (27%)
Length = 495
Score = 82.0 bits (201), Expect = 5e-17
Identities = 36/60 (60%), Positives = 45/60 (75%), Gaps = 6/60 (10%)
Frame = +1
Query: 12 EDPQRSVVKYGECQKNHAANVGGYAVDGCREFMPSTNG------SLTCAACGCHRNFHKR 65
+ P + V Y EC KNHAA++GG+A+DGC EFMPS++ SLTCAACGCHRNFH+R
Sbjct: 154 QQPPSTTVFYKECLKNHAASIGGHALDGCGEFMPSSSSNPNEPRSLTCAACGCHRNFHRR 333
>TC216916 similar to UP|Q9ARE3 (Q9ARE3) ZF-HD homeobox protein, partial (50%)
Length = 1604
Score = 79.0 bits (193), Expect = 4e-16
Identities = 38/78 (48%), Positives = 49/78 (62%), Gaps = 6/78 (7%)
Frame = +3
Query: 6 VVVRRSEDPQRSVVKYGECQKNHAANVGGYAVDGCREFMPS------TNGSLTCAACGCH 59
V+ R + + + V Y EC KNH A++GG+A+DGC EFMPS S+ CAACGCH
Sbjct: 408 VLKRHHANHRPNAVVYKECLKNHVASLGGHALDGCGEFMPSPAATADDPSSIKCAACGCH 587
Query: 60 RNFHKREVEVVSESSSPH 77
RNFH+RE E S + H
Sbjct: 588 RNFHRREPEETPISPATH 641
>TC227151 similar to UP|Q9ARE4 (Q9ARE4) ZF-HD homeobox protein, partial (58%)
Length = 1456
Score = 74.3 bits (181), Expect = 1e-14
Identities = 30/58 (51%), Positives = 44/58 (75%), Gaps = 4/58 (6%)
Frame = +1
Query: 15 QRSVVKYGECQKNHAANVGGYAVDGCREFMPS----TNGSLTCAACGCHRNFHKREVE 68
++ V+Y ECQKNHA ++GG+AVDGC EF+ + T ++ CAAC CHRNFH++E++
Sbjct: 286 RKGTVRYRECQKNHAVSIGGHAVDGCCEFLAAGEEGTLEAVICAACNCHRNFHRKEID 459
>TC211095
Length = 518
Score = 72.4 bits (176), Expect = 4e-14
Identities = 37/59 (62%), Positives = 44/59 (73%), Gaps = 7/59 (11%)
Frame = +3
Query: 1 MRKRQVVVRRSEDPQRSV---VKYGECQKNHAANVGGYAVDGCREFMPST----NGSLT 52
M+KRQVVV+ + SV ++YGECQKNHAAN+GGYAVDGCREFM ST G+LT
Sbjct: 342 MKKRQVVVKSVANTSSSVMRNIRYGECQKNHAANIGGYAVDGCREFMASTGEGAGGALT 518
>CO984513
Length = 771
Score = 72.4 bits (176), Expect = 4e-14
Identities = 35/67 (52%), Positives = 45/67 (66%), Gaps = 6/67 (8%)
Frame = -2
Query: 17 SVVKYGECQKNHAANVGGYAVDGCREFMPS----TNGSLTCAACGCHRNFHKREVE--VV 70
++ +Y EC KNHAA++GG+ DGC EFMP+ T SL CAAC CHRNFH++E V+
Sbjct: 740 TLFRYRECLKNHAASMGGHVTDGCGEFMPNGEEGTPESLKCAACECHRNFHRKEPHQGVL 561
Query: 71 SESSSPH 77
ES H
Sbjct: 560 VESQLQH 540
>TC234368 similar to UP|Q9ARE3 (Q9ARE3) ZF-HD homeobox protein, partial (14%)
Length = 432
Score = 72.4 bits (176), Expect = 4e-14
Identities = 32/62 (51%), Positives = 43/62 (68%)
Frame = +2
Query: 15 QRSVVKYGECQKNHAANVGGYAVDGCREFMPSTNGSLTCAACGCHRNFHKREVEVVSESS 74
+R+ Y EC +NHAA++G YA DGC E+ G L CAACGCHRNFH R+V+ ++ +
Sbjct: 62 ERNSSVYRECLRNHAASLGSYATDGCGEYTVDGAGGLQCAACGCHRNFH-RKVKYLAAAE 238
Query: 75 SP 76
SP
Sbjct: 239 SP 244
>TC234945 similar to UP|Q9ARE3 (Q9ARE3) ZF-HD homeobox protein, partial
(28%)
Length = 403
Score = 72.4 bits (176), Expect = 4e-14
Identities = 32/56 (57%), Positives = 38/56 (67%)
Frame = +1
Query: 17 SVVKYGECQKNHAANVGGYAVDGCREFMPSTNGSLTCAACGCHRNFHKREVEVVSE 72
SV Y EC +NHAA++G YA DGC EF G L CAACGCHRNFH++ V+E
Sbjct: 43 SVSVYRECLRNHAASLGSYATDGCGEFTVDGAGGLQCAACGCHRNFHRKVKYPVAE 210
>BF069575 similar to GP|13277220|em ZF-HD homeobox protein {Flaveria
bidentis}, partial (30%)
Length = 415
Score = 72.0 bits (175), Expect = 5e-14
Identities = 32/49 (65%), Positives = 37/49 (75%), Gaps = 6/49 (12%)
Frame = +3
Query: 26 KNHAANVGGYAVDGCREFMPSTN------GSLTCAACGCHRNFHKREVE 68
KNHAAN+GG+A+DGC EFMPS S+ CAACGCHRNFH+RE E
Sbjct: 3 KNHAANLGGHALDGCGEFMPSPTATAADPSSIKCAACGCHRNFHRREPE 149
>TC211006 similar to UP|Q9ARE4 (Q9ARE4) ZF-HD homeobox protein, partial (54%)
Length = 854
Score = 69.3 bits (168), Expect = 3e-13
Identities = 29/53 (54%), Positives = 38/53 (70%), Gaps = 4/53 (7%)
Frame = +1
Query: 20 KYGECQKNHAANVGGYAVDGCREFMPS----TNGSLTCAACGCHRNFHKREVE 68
+Y EC KNHA +GG+A+DGC EFM + T +L CAAC CHRNFH++E +
Sbjct: 79 RYRECLKNHAVGIGGHALDGCGEFMAAGMEGTLDALKCAACSCHRNFHRKEAD 237
>TC225178 weakly similar to UP|POS5_YEAST (Q06892) POS5 protein, partial (6%)
Length = 892
Score = 66.6 bits (161), Expect = 2e-12
Identities = 33/77 (42%), Positives = 43/77 (54%), Gaps = 4/77 (5%)
Frame = +3
Query: 9 RRSEDPQRSVVKYGECQKNHAANVGGYAVDGCREFMPSTNG----SLTCAACGCHRNFHK 64
R+ E+ S Y EC +NHAA++G YA DGC EF + SL C ACGCHRNFH+
Sbjct: 219 RKMENSSSSNYLYRECLRNHAASLGSYATDGCGEFTLDADSVSSPSLQCMACGCHRNFHR 398
Query: 65 REVEVVSESSSPHSNGT 81
+ V E + G+
Sbjct: 399 KVTCPVVEGPQVVTGGS 449
>TC215084 similar to UP|Q9XHW0 (Q9XHW0) 10A19I.6, partial (22%)
Length = 1193
Score = 65.5 bits (158), Expect = 5e-12
Identities = 31/68 (45%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Frame = +1
Query: 2 RKRQVVVRRSEDPQRSVVKYGECQKNHAANVGGYAVDGCREFMPSTNG----SLTCAACG 57
+K + + S S Y EC +NHAA++G YA DGC EF + SL CAACG
Sbjct: 472 KKERHMENSSSSSSCSNYLYRECLRNHAASLGSYATDGCGEFTLDVDSVSSPSLQCAACG 651
Query: 58 CHRNFHKR 65
CHRNFH++
Sbjct: 652 CHRNFHRK 675
>AW598597 similar to GP|16612295|gb| AT4g24660/F22K18_140 {Arabidopsis
thaliana}, partial (23%)
Length = 448
Score = 62.0 bits (149), Expect = 5e-11
Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Frame = +1
Query: 20 KYGECQKNHAANVGGYAVDGCREFMP----STNGSLTCAACGCHRNFHKRE 66
KY EC KNH ++G + +DGC EF+P T +L C C CHRNFH++E
Sbjct: 199 KYQECLKNHGVSIGKHIIDGCIEFLPGGQEGTLEALKCVVCNCHRNFHRKE 351
>BF010438
Length = 160
Score = 54.7 bits (130), Expect = 8e-09
Identities = 26/31 (83%), Positives = 26/31 (83%), Gaps = 1/31 (3%)
Frame = -3
Query: 51 LTCAACGCHRNFHKR-EVEVVSESSSPHSNG 80
LTCAACGCHRNFHKR E EVVSE SSP S G
Sbjct: 158 LTCAACGCHRNFHKRQETEVVSECSSPTSKG 66
>TC221327 similar to UP|Q9ARE4 (Q9ARE4) ZF-HD homeobox protein, partial
(41%)
Length = 837
Score = 52.0 bits (123), Expect = 5e-08
Identities = 24/35 (68%), Positives = 26/35 (73%), Gaps = 3/35 (8%)
Frame = +1
Query: 37 VDGCREFMPSTNG---SLTCAACGCHRNFHKREVE 68
VDGC EFM S G SL CAAC CHRNFH++EVE
Sbjct: 7 VDGCGEFMASGEGTPESLRCAACECHRNFHRKEVE 111
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.316 0.129 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,399,720
Number of Sequences: 63676
Number of extensions: 62448
Number of successful extensions: 345
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of query: 81
length of database: 12,639,632
effective HSP length: 57
effective length of query: 24
effective length of database: 9,010,100
effective search space: 216242400
effective search space used: 216242400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)
Medicago: description of AC139600.10