TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139343.3 + phase: 0 /pseudo
         (216 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BE660459 homologue to GP|9294590|dbj| dihydroxyacetone/glycerone...   134  2e-32
TC226468 weakly similar to UP|O65450 (O65450) Glycine-rich prote...    30  0.84
TC232251 similar to GB|AAN72088.1|25083502|BT002077 expressed pr...    27  5.4

>BE660459 homologue to GP|9294590|dbj| dihydroxyacetone/glycerone kinase-like
           protein {Arabidopsis thaliana}, partial (14%)
          Length = 593

 Score =  134 bits (338), Expect = 2e-32
 Identities = 66/82 (80%), Positives = 72/82 (87%)
 Frame = +3

Query: 1   METYPSLQYLDGYPNVKVVFRKDVYPGPPYDKVAIISGGGSGHEPAHAGFVGEGMLTAAI 60
           +ETYP LQYLDG+P VKVV R DV     YDKVAIISGGGSGHEPAHAGFVGEGMLTAAI
Sbjct: 339 VETYPGLQYLDGFPQVKVVLRADV-SAATYDKVAIISGGGSGHEPAHAGFVGEGMLTAAI 515

Query: 61  CGDVFASPTVEAILAGIRAVTG 82
           CGD+F+SP V++ILAGIRAVTG
Sbjct: 516 CGDIFSSPPVDSILAGIRAVTG 581


>TC226468 weakly similar to UP|O65450 (O65450) Glycine-rich protein, partial
           (20%)
          Length = 1041

 Score = 30.0 bits (66), Expect = 0.84
 Identities = 24/78 (30%), Positives = 32/78 (40%)
 Frame = +1

Query: 35  IISGGGSGHEPAHAGFVGEGMLTAAICGDVFASPTVEAILAGIRAVTGPMGCLLIVKNYT 94
           + +GGG   +   AGFVG G    A  G  FA      +LAG+ A+ G         N  
Sbjct: 511 VAAGGGGTGDGVGAGFVGAG----AGAGVAFAGAGDGGVLAGVGAIFGG-------GNGG 657

Query: 95  GDRLNFGSAAEQAKSEGY 112
           GD    G +      EG+
Sbjct: 658 GDATGGGGSGGGETGEGF 711


>TC232251 similar to GB|AAN72088.1|25083502|BT002077 expressed protein
           {Arabidopsis thaliana;} , partial (49%)
          Length = 727

 Score = 27.3 bits (59), Expect = 5.4
 Identities = 22/51 (43%), Positives = 23/51 (44%), Gaps = 1/51 (1%)
 Frame = +2

Query: 33  VAIISGGGSGHEPAHAGFVGEGMLTAAICGDVFASPTVEAILAGIRA-VTG 82
           V    GGG G E A  G  GEG       G V   PT     AG+RA VTG
Sbjct: 173 VRCADGGGGGREDARGGGAGEGDEARRSGGGV--GPTTR---AGVRASVTG 310


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.317    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,496,027
Number of Sequences: 63676
Number of extensions: 75812
Number of successful extensions: 338
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of query: 216
length of database: 12,639,632
effective HSP length: 93
effective length of query: 123
effective length of database: 6,717,764
effective search space: 826284972
effective search space used: 826284972
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)