BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138465.7 + phase: 0 /pseudo
(2330 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC232528 weakly similar to UP|Q6WAY5 (Q6WAY5) Gag/pol polyprotei... 145 2e-34
TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 97 6e-20
CF922341 96 2e-19
TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotei... 67 1e-10
TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 53 2e-08
BU084093 58 4e-08
CF922488 57 9e-08
BI674393 56 2e-07
AW706233 54 8e-07
TC228885 53 1e-06
CF921210 52 2e-06
CF922207 49 3e-05
NP395547 reverse transcriptase [Glycine max] 47 1e-04
NP334778 reverse transcriptase [Glycine max] 45 5e-04
AW184779 44 8e-04
CA953191 44 0.001
TC228886 43 0.002
CF922465 40 0.009
TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 40 0.015
BQ296385 39 0.026
>TC232528 weakly similar to UP|Q6WAY5 (Q6WAY5) Gag/pol polyprotein
(Fragment), partial (3%)
Length = 449
Score = 145 bits (366), Expect = 2e-34
Identities = 71/139 (51%), Positives = 104/139 (74%)
Frame = +1
Query: 757 SKISVLSLLLSSEAHRSTLLKVLEQAYVDHEVTVDRFGGIVGNITACNNLWFSEDEMPET 816
+++S+L LL+SSE HR+ L+KVL +A+V +++V+ FGG+V NITA N L F+E+E+P
Sbjct: 31 ARVSLLELLMSSEPHRALLVKVLNEAHVAQDISVEGFGGLVNNITANNYLAFAEEEIPAE 210
Query: 817 RKYHNLALHISVNWKSDMLSNVLVDTGSSLNVMPKSTLDQLSYRETPLRRSTFLVKAFDG 876
+ HN ALH+SV +++ VL+D G SLNVMPKSTLD+L + + L+ S+ +V+AFDG
Sbjct: 211 GRGHNKALHVSVKCMDHIVAKVLIDNGYSLNVMPKSTLDKLPFNASHLKPSSMVVRAFDG 390
Query: 877 SRKNVLGEIDLPMTIGHET 895
+R+ V GEIDLP+ IG T
Sbjct: 391 TRREVRGEIDLPVQIGPHT 447
>TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (9%)
Length = 843
Score = 97.4 bits (241), Expect = 6e-20
Identities = 86/222 (38%), Positives = 105/222 (46%)
Frame = +2
Query: 1915 TINPGITTSSSSC*AMSIHRVLPTKTRRL*EDWLVGSY*MGTFCTRETTTWYC*DVLMST 1974
T++ GI+TSS *A + + LPT R *E W S * +C RETTT V M
Sbjct: 128 TVSLGISTSSDMS*AKNTCQRLPTMIRGH*EGWRPVSS*AEAYCIRETTT*NLCGVWMPG 307
Query: 1975 KQSS*CMMYMTVPSGPMLQGILCEGSCYEQVTTG*PWSMIATSTPESATNVKSIPIRSMC 2034
+Q +* M G+L G EQV TG PW +I S +ATNVK I SM
Sbjct: 308 RQIT*SRKSMRARLERTPTGMLWPGRS*EQVITGLPWKVIVVSM*GNATNVKRSQIMSMP 487
Query: 2035 LRTLSMLFHPHGRSQCGAST*LEELNRRLQMVIVSS*WQLTTSPNGLKRHLIPM*PSTW* 2094
R L M P G S CG L+ R +MVI SS + SP+G ++ IP W
Sbjct: 488 HRIL*MSCPPLGLSPCGE*MSSGPLSPRPRMVIASSS*R*IISPSGSRQLPIPTS*GVWW 667
Query: 2095 LSSSRTTSSVDMVFPARSLPTMVLT*ITMWCKLFVKNSKLSI 2136
S R SS DMV R T T*IT F ++ K SI
Sbjct: 668 SGSLRKRSSADMVCQGRLSRTTAPT*ITR*WGKFARSLKSSI 793
>CF922341
Length = 675
Score = 95.9 bits (237), Expect = 2e-19
Identities = 48/119 (40%), Positives = 69/119 (57%), Gaps = 4/119 (3%)
Frame = +1
Query: 139 MEELAK--ELRREIKANRGNGDSV--KTHDLCLVPKVDVPKKFKIPEFDRYNGLTCPQNH 194
M E+ K L ++A G D +L LVP + P KFK+ +FD+Y G TCP+NH
Sbjct: 289 MAEMGKLDHLEEGLRAIEGGEDYAFANLEELFLVPNIITPPKFKVLDFDKYKGTTCPKNH 468
Query: 195 IIKYVRKMGNYSDNDSLMIHCFQDSLMEDAAEWYTSLSKDDVHTFDELAAAFKSHYGFN 253
+ Y +KMG Y+ ++ L+IH FQ+SL A WYT+L VH++ +L AF Y +N
Sbjct: 469 LKMYCQKMGAYAKDEELLIHSFQESLTGVAVTWYTNLEPSRVHSWKDLMVAFVRQYQYN 645
>TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotein (Fragment),
partial (8%)
Length = 1320
Score = 66.6 bits (161), Expect = 1e-10
Identities = 48/125 (38%), Positives = 57/125 (45%), Gaps = 15/125 (12%)
Frame = +1
Query: 916 PWIHDAGAVTSTLHKKLKFVKNGKLVTVHGEEAYLVSQLSSFSCIEAGSAE-GTAFQGLT 974
PWIH G V STLH+KLKFV G LV V GEE LVS SS +EA TAFQ
Sbjct: 1 PWIHSVGVVPSTLHQKLKFVVEGHLVIVSGEEDILVSCPSSMPYVEAAEESLETAFQSFE 180
Query: 975 IEGTELKKTGTAMASLKD-----AQKAVQEGQAAGWG---------KLIQLRENKHKEGL 1020
+ + L D A+ + G G G LI + N+ K GL
Sbjct: 181 VVSISSVDSLFGQPCLSDAAVMMARVMLGNGYEPGMGLGKDNGGITSLINTQGNRGKYGL 360
Query: 1021 GFSPT 1025
G+ PT
Sbjct: 361 GYKPT 375
Score = 43.1 bits (100), Expect = 0.001
Identities = 28/73 (38%), Positives = 37/73 (50%)
Frame = +2
Query: 1259 RIPGYFCMVVRRYARSRS*DCGTSDPHKA*MSSRQAEIEKDSSRYGSQD*E*GSKAD*CG 1318
R+P + C+V+ RYAR * C K+ + +AE EKD +R +D K *
Sbjct: 1085 RLPRHLCLVIPRYARFEF*HCTAPITSKSRVFPGKAETEKDEARNILEDKRRSEKVI*RW 1264
Query: 1319 FSHDSRVS*MGCQ 1331
FS VS MGCQ
Sbjct: 1265 FSGRRSVSKMGCQ 1303
>TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (3%)
Length = 803
Score = 53.1 bits (126), Expect(2) = 2e-08
Identities = 53/167 (31%), Positives = 76/167 (44%), Gaps = 1/167 (0%)
Frame = +3
Query: 1802 SRKQLI*ESNTSTSMEILHLSSTR*RVNGRPTMPS*FLIV-ITRDVC*HILQRLSYTIFL 1860
SR+QL S+ S M H T * N + P+*+ I+R+ +++ S T+ L
Sbjct: 207 SRQQLTPMSSYSRCMGTQHW*FTS*EGNAKLETPT*YPTKPISRNWLVSLMRSPSITL-L 383
Query: 1861 VMRTKWLMLLLLYPPCFE*IIGMMCQ*SKYNALKDLLMCLLLKI*SVGLMKMWLTINPGI 1920
+ KW M L L PC * + + L + ++ V K T++ GI
Sbjct: 384 ERKIKWQMRLPL*CPC--------SS*HRMGTYRTLSLGVVADPHIVVWWKRNGTVSLGI 539
Query: 1921 TTSSSSC*AMSIHRVLPTKTRRL*EDWLVGSY*MGTFCTRETTTWYC 1967
SS + A S H LPT T+ DW S * +CTRET TW+C
Sbjct: 540 LISSDTLKAKSTHWRLPTTTKGERGDWQPASS*AEAYCTRETMTWFC 680
Score = 25.8 bits (55), Expect(2) = 2e-08
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +2
Query: 1750 SGG*SLMVLSMLMAKELGQSLYPRRGITFLLLPGFCSNVQTIWLSMK 1796
SG L+ A LGQ + +L PG+ S TIWLSMK
Sbjct: 50 SGSCGLIERQTF*AMALGQYWSLQTINVYLSQPGWGSIAPTIWLSMK 190
>BU084093
Length = 421
Score = 58.2 bits (139), Expect = 4e-08
Identities = 29/75 (38%), Positives = 39/75 (51%)
Frame = -1
Query: 447 FPPIPMLYAELLPTLLLRGHCTTRHGKPPPDPLLLRFRSDLKCDFHQGALGHDVEGCYTL 506
F P+PM Y +LLP+L+ G+ P + + C +H G GH VE C L
Sbjct: 226 FTPLPMTYEDLLPSLIANHLAVVTPGRVLQPPFPKWYDPNATCKYHGGVPGHSVEKCLAL 47
Query: 507 KYIVKKLIDQGKLTF 521
KY V+ L+D G LTF
Sbjct: 46 KYKVQHLMDAGWLTF 2
>CF922488
Length = 741
Score = 57.0 bits (136), Expect = 9e-08
Identities = 74/228 (32%), Positives = 101/228 (43%), Gaps = 1/228 (0%)
Frame = +1
Query: 1338 RRMEKSGCVLTSET*TKPVQKTTSHYPI-LMCLLTILLSPRCSPSWTASPVTIRSKCPLR 1396
+RM + C T E *TKPVQ+ + Y I +T + P SPSW V R + R
Sbjct: 10 KRMGRCECAWTIEI*TKPVQRISFLYRISTFSWITRPVFPN-SPSWMDFQVITR*R*HQR 186
Query: 1397 IEKRHLLSPHGVLSATK*CRSV**ILVLPTKEE*LLCFMT*FTKKSKYMWTI*L*SQNMR 1456
I KR L +G SA + CR * +L T T* T++ + W * *+Q R
Sbjct: 187 IWKRQLSLLYGEPSAIRLCRLG*RMLGQHTSGPWWHYSRT*CTRR*RSTWMT*S*NQERR 366
Query: 1457 SNMSST*QKCSKG*ESTSFD*TLTNVRSASDSENYYASLSVKRALKSTLIKSGSSEKCQL 1516
N S + C +T D* +V + E+ L + + + S +
Sbjct: 367 RNTLSICESCLGDYVNTG*D*IPQSVCLR*NPESCSTLLIAREE*RWIRTR*K*SLRWPS 546
Query: 1517 DRPRNKSEVSSGV*ITSPDSYLT*PQPAGRSSSYSGRISLLYGTLNAK 1564
R+KS+VS G * TS DSY +* A S RISL GT+ K
Sbjct: 547 HIQRSKSKVSWGG*TTS*DSYHS*LPLASLFSYCCARISLSNGTMIVK 690
>BI674393
Length = 152
Score = 55.8 bits (133), Expect = 2e-07
Identities = 24/44 (54%), Positives = 39/44 (88%)
Frame = +1
Query: 736 EILRIIKRSDYKIVDQLLQTPSKISVLSLLLSSEAHRSTLLKVL 779
E LRII++S++K+++QL +TP+++S+L LL+SSE HR+ L+KVL
Sbjct: 16 EFLRIIQQSEFKVIEQLNKTPARVSLLELLMSSEPHRALLVKVL 147
>AW706233
Length = 376
Score = 53.9 bits (128), Expect = 8e-07
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = -3
Query: 141 ELAKELRREIKANRGNGDSV--KTHDLCLVPKVDVPKKFKIPEFDRYNGLTCPQNHIIKY 198
E L+ KA G D +L LV + P KFK+ FD+Y G TCP+NH+ Y
Sbjct: 347 EKLDHLKERFKAIEGGQDYAFANLEELFLVXNIISPPKFKVLNFDKYKGTTCPKNHLKMY 168
Query: 199 VRKMGNYSDND 209
+KMG Y+ ++
Sbjct: 167 CQKMGAYAKDE 135
>TC228885
Length = 901
Score = 53.1 bits (126), Expect = 1e-06
Identities = 43/133 (32%), Positives = 57/133 (42%)
Frame = -3
Query: 392 SYPYAPYSQHPFFPPFYHQYPLPSGQPQVPVNAVVQQMQQQPPVQQQQHQQARPTFPPIP 451
S P+ P H P H+ LP Q + P A + Q+ ++ + F PIP
Sbjct: 767 SLPHHPVI-HKGHP*INHKVCLPHFQ*RTPPLAQTKNTNQEMNFAARKPVE----FTPIP 603
Query: 452 MLYAELLPTLLLRGHCTTRHGKPPPDPLLLRFRSDLKCDFHQGALGHDVEGCYTLKYIVK 511
+ YA+LLP LL K P L + S+ C H A G +E LK V+
Sbjct: 602 VSYADLLPYLLDNSMVAITLAKVHQPPFLREYDSNAMCACHGEAPGRSIEHYRALKRKVQ 423
Query: 512 KLIDQGKLTFENN 524
LID G L FE N
Sbjct: 422 GLIDAGWLKFEEN 384
>CF921210
Length = 790
Score = 52.4 bits (124), Expect = 2e-06
Identities = 40/117 (34%), Positives = 53/117 (45%)
Frame = +2
Query: 408 YHQYPLPSGQPQVPVNAVVQQMQQQPPVQQQQHQQARPTFPPIPMLYAELLPTLLLRGHC 467
YH+ LP Q + P A + Q+ ++ + F PIP+ YA+LL LL
Sbjct: 236 YHKVCLPHFQ*RTPPLAQTKNTNQEVNFAARKPVE----FTPIPVSYADLLSYLLDNSMV 403
Query: 468 TTRHGKPPPDPLLLRFRSDLKCDFHQGALGHDVEGCYTLKYIVKKLIDQGKLTFENN 524
K PL + S+ C GAL H +E C LK V+ LID G L FE N
Sbjct: 404 AITLAKVHQPPLF*GYDSNATCG---GALRHSIEHCRALKRKVQGLIDAGWLKFEEN 565
>CF922207
Length = 616
Score = 48.5 bits (114), Expect = 3e-05
Identities = 34/94 (36%), Positives = 43/94 (45%)
Frame = -1
Query: 431 QQPPVQQQQHQQARPTFPPIPMLYAELLPTLLLRGHCTTRHGKPPPDPLLLRFRSDLKCD 490
QQ + QQ+ + P F ML L+P L K P P + S+ C
Sbjct: 601 QQKGILQQKACRVHPKFR-CHML--NLIPYPLDNSMVAITPTKVPQPPFFREYDSNATCA 431
Query: 491 FHQGALGHDVEGCYTLKYIVKKLIDQGKLTFENN 524
+H GA GH +E C T K+ V LID G L FE N
Sbjct: 430 YHGGAPGHSIEHCMTPKHKV*SLIDTG*LKFEEN 329
>NP395547 reverse transcriptase [Glycine max]
Length = 762
Score = 47.0 bits (110), Expect = 1e-04
Identities = 36/104 (34%), Positives = 51/104 (48%)
Frame = +2
Query: 1345 CVLTSET*TKPVQKTTSHYPILMCLLTILLSPRCSPSWTASPVTIRSKCPLRIEKRHLLS 1404
CVL + KP +KT +H+P + L L + SWT + VTIR + LRI+K+ LL
Sbjct: 167 CVLIIGSSMKPQEKTITHFPSWIKCLRDLQGNPSTVSWTDTQVTIRLQWILRIKKKQLLH 346
Query: 1405 PHGVLSATK*CRSV**ILVLPTKEE*LLCFMT*FTKKSKYMWTI 1448
V CRSV + +L ++ * MT K +W I
Sbjct: 347 VLSVFLLIAACRSVYVMPLLLFRDV*WQFLMTW*RNVLKSLWMI 478
>NP334778 reverse transcriptase [Glycine max]
Length = 431
Score = 44.7 bits (104), Expect = 5e-04
Identities = 48/124 (38%), Positives = 59/124 (46%), Gaps = 1/124 (0%)
Frame = +1
Query: 1344 GCVLTSET*TKPVQKTTSHYPI-LMCLLTILLSPRCSPSWTASPVTIRSKCPLRIEKRHL 1402
GCV T E *T+PVQ+ Y LT + P S SW V IR + RI KR L
Sbjct: 4 GCVWTIEI*TEPVQRIIFLYRTSTFSWLTWPVLPY-SLSWMDFRVIIR*RWHQRIWKRQL 180
Query: 1403 LSPHGVLSATK*CRSV**ILVLPTKEE*LLCFMT*FTKKSKYMWTI*L*SQNMRSNMSST 1462
+G SA +*CR * IL PT T* T++S+ MW * +Q R N S
Sbjct: 181 SLLYGEPSAIR*CRLG*RILGQPTIGPWWHYSRT*CTRRSRPMWMK*SRNQEWRRNT*SI 360
Query: 1463 *QKC 1466
+ C
Sbjct: 361 CKIC 372
>AW184779
Length = 432
Score = 43.9 bits (102), Expect = 8e-04
Identities = 27/46 (58%), Positives = 31/46 (66%)
Frame = +1
Query: 2050 CGAST*LEELNRRLQMVIVSS*WQLTTSPNGLKRHLIPM*PSTW*L 2095
CGA T* E L+ RLQM I S * QLTTSPNG K+ + +* W*L
Sbjct: 292 CGA*T*SEPLSPRLQMDITSF*SQLTTSPNGSKQFRMLV*LGVW*L 429
>CA953191
Length = 422
Score = 43.5 bits (101), Expect = 0.001
Identities = 28/58 (48%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = -3
Query: 905 INASYSCLLGRPW-IHDAGAVTSTLHKKLKFVKNGKLVTVHGEEAYLVSQLSSFSCIE 961
I +Y+ L GRPW IH V STLH K K V +GKLV + +E LV + SS IE
Sbjct: 420 ITPTYNGLQGRPWRIHCVKLVPSTLH*K*KIVIDGKLVIIFVKEDLLVGEPSSTPYIE 247
>TC228886
Length = 748
Score = 42.7 bits (99), Expect = 0.002
Identities = 21/47 (44%), Positives = 26/47 (54%)
Frame = +3
Query: 478 PLLLRFRSDLKCDFHQGALGHDVEGCYTLKYIVKKLIDQGKLTFENN 524
P + S+ C +H GA GH +E C T K+ V LID G L FE N
Sbjct: 138 PFF*GYDSNATCAYHGGASGHSIEHCMTPKHKV*SLIDTGWLKFEEN 278
>CF922465
Length = 538
Score = 40.4 bits (93), Expect = 0.009
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = -2
Query: 475 PPDPLLLRFRSDLKCDFHQGALGHDVEGCYTLKYIVKKLIDQGKLTFENN 524
P P + S+ C H+ +LGH +E C T K V+ ID G L FE N
Sbjct: 486 PQPPFFRGYDSNATCACHEESLGHSIEHCMTSKRKVQGPIDAGWLKFEEN 337
>TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
Length = 669
Score = 39.7 bits (91), Expect = 0.015
Identities = 52/167 (31%), Positives = 75/167 (44%), Gaps = 2/167 (1%)
Frame = +2
Query: 2151 KPPTRISRGLSRKW*PLTRTDMRCYPMLCIATVLQCVVQPGQPLFLLHMVWKQFFLWKWR 2210
K P RIS+ LS++ TR RC T LQC Q GQ +M W+ + + +
Sbjct: 2 KRPIRISKRLSKR*PCHTRIGTRCSHSRYTVTGLQCERQLGQRRSHWYMGWRLCYRLR*K 181
Query: 2211 SHLPV*SWKQSYPR-LNGAKAGMIS*IWLMKNVWMPWLVDS-LKQE*RLPLTRKSILENS 2268
S SW+ R +G K MIS L + P ++ + +E*R+ TR+ +S
Sbjct: 182 SR-H*GSWQNPD*RNQSGLKRAMISSTSLRVSA*RP*VMGACTSKE*RVHSTRRYACASS 358
Query: 2269 RKVNLY*KGG*ASNPTQGASGRLTMKVLMLSRRPSPVVL*FLHTWMV 2315
+ L *+ + T +G T K L+L R P L TWMV
Sbjct: 359 MRETLC*RKCPMLSRTIEGNGPRTTKGLLL*RGLFPEEPWCLPTWMV 499
>BQ296385
Length = 399
Score = 38.9 bits (89), Expect = 0.026
Identities = 26/87 (29%), Positives = 31/87 (34%), Gaps = 7/87 (8%)
Frame = +2
Query: 373 GAGQSMATVAPINAAQL-------PPSYPYAPYSQHPFFPPFYHQYPLPSGQPQVPVNAV 425
G G + P N +L PP P P QHP PP H + P P +V
Sbjct: 5 GGGTKRRSFRPHNPGRLRLHRQIRPPRSPQIP--QHPILPPQIHSHSGPKPTKTNPGPSV 178
Query: 426 VQQMQQQPPVQQQQHQQARPTFPPIPM 452
Q Q P RP PP P+
Sbjct: 179 GLQAQPSPLPPHPHRGHRRPLLPPFPL 259
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.338 0.146 0.475
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,488,946
Number of Sequences: 63676
Number of extensions: 1730170
Number of successful extensions: 14580
Number of sequences better than 10.0: 108
Number of HSP's better than 10.0 without gapping: 13594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14386
length of query: 2330
length of database: 12,639,632
effective HSP length: 113
effective length of query: 2217
effective length of database: 5,444,244
effective search space: 12069888948
effective search space used: 12069888948
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 67 (30.4 bits)
Medicago: description of AC138465.7