BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138464.5 + phase: 0
(235 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC226798 weakly similar to UP|Q8W575 (Q8W575) AT5g14250/F18O22_4... 280 4e-76
TC226799 weakly similar to UP|Q84UV4 (Q84UV4) CSN3 (Fragment), p... 198 1e-53
AW278847 similar to GP|29468345|gb| CSN3 {Nicotiana benthamiana}... 103 9e-30
BF325025 similar to PIR|F86422|F86 carbamoyl-phosphate synthase ... 30 0.73
BI427413 29 2.1
TC211336 weakly similar to UP|Q8GVD9 (Q8GVD9) Cyclin D3, partial... 28 2.8
TC219971 UP|Q6T2Z4 (Q6T2Z4) Wee1, complete 28 3.6
AW569301 28 4.7
TC214502 UP|Q8XMT7 (Q8XMT7) Probable amino acid ABC transporter,... 28 4.7
AW734258 28 4.7
TC221647 28 4.7
CF922272 27 6.2
TC228744 similar to UP|Q94A21 (Q94A21) AT5g15330/F8M21_220, part... 27 6.2
TC233193 27 8.0
BG510030 similar to GP|16226927|gb| At1g63720/F24D7_9 {Arabidops... 27 8.0
TC215180 homologue to UP|Q8LP17 (Q8LP17) Nine-cis-epoxycarotenoi... 27 8.0
>TC226798 weakly similar to UP|Q8W575 (Q8W575) AT5g14250/F18O22_40, partial
(86%)
Length = 1572
Score = 280 bits (716), Expect = 4e-76
Identities = 138/184 (75%), Positives = 160/184 (86%)
Frame = +1
Query: 1 MDPLEPLIAQIQGLSSSSADIARLHTILKHSDETLRSDSSRLYPILQLIDPSIHSLGFLY 60
MDPLE L+AQIQGLSS+ D+ RLH++LK +D++LRS+S+RL PIL +DPSIHSLGFLY
Sbjct: 85 MDPLEALVAQIQGLSSTPGDLTRLHSVLKQADDSLRSESTRLAPILTQLDPSIHSLGFLY 264
Query: 61 LLDAFSAASVSNQQQAEEAVPIIARFINACSVEQIRLAPEKFVSVCKRLKDLVTLLEAPI 120
+L+A V+ + QAE VPI+ RFI ACS EQIRLAP+KF+SVCKRLKD V LLEAPI
Sbjct: 265 ILEASMTDPVT-KTQAETVVPIVTRFIGACSPEQIRLAPDKFLSVCKRLKDQVMLLEAPI 441
Query: 121 RGVAPMFTALRKLQVSAEHLTPLHAEFLMLCLLAKCYKTGLSILDDDVFEVDHPRDLYLY 180
RGVAP+FTALRKLQVS EHLTPLH+EFL+LCLLAKCYKTGLSILDDDVFEVD PRDL+LY
Sbjct: 442 RGVAPLFTALRKLQVSTEHLTPLHSEFLLLCLLAKCYKTGLSILDDDVFEVDQPRDLFLY 621
Query: 181 CYYG 184
CYYG
Sbjct: 622 CYYG 633
>TC226799 weakly similar to UP|Q84UV4 (Q84UV4) CSN3 (Fragment), partial (62%)
Length = 673
Score = 198 bits (504), Expect(2) = 1e-53
Identities = 105/169 (62%), Positives = 123/169 (72%)
Frame = +2
Query: 1 MDPLEPLIAQIQGLSSSSADIARLHTILKHSDETLRSDSSRLYPILQLIDPSIHSLGFLY 60
MDPLE L+AQIQGLSSS D+ RLHT+LK +D++LRS+S+RL PIL +DPSIHSLGFLY
Sbjct: 122 MDPLEALVAQIQGLSSSPGDLTRLHTVLKQADDSLRSESTRLAPILTQLDPSIHSLGFLY 301
Query: 61 LLDAFSAASVSNQQQAEEAVPIIARFINACSVEQIRLAPEKFVSVCKRLKDLVTLLEAPI 120
+L+A V+ + QAE VPI+ RFI ACS EQIRLAP+KF+SVCKRLKD V LLEAPI
Sbjct: 302 ILEASMTGPVT-KTQAEVVVPIVTRFIGACSTEQIRLAPDKFLSVCKRLKDQVMLLEAPI 478
Query: 121 RGVAPMFTALRKLQVSAEHLTPLHAEFLMLCLLAKCYKTGLSILDDDVF 169
RGVAP+ ALRKLQ AEHLT + F K LDDD F
Sbjct: 479 RGVAPLXNALRKLQAFAEHLTSVTQRFFFXAW*QSAXKLXYPYLDDDGF 625
Score = 28.9 bits (63), Expect(2) = 1e-53
Identities = 12/17 (70%), Positives = 13/17 (75%)
Frame = +3
Query: 168 VFEVDHPRDLYLYCYYG 184
VFEVD PRD +LY YG
Sbjct: 621 VFEVDQPRDXFLYW*YG 671
>AW278847 similar to GP|29468345|gb| CSN3 {Nicotiana benthamiana}, partial
(36%)
Length = 291
Score = 103 bits (257), Expect(2) = 9e-30
Identities = 51/66 (77%), Positives = 55/66 (83%)
Frame = +2
Query: 75 QAEEAVPIIARFINACSVEQIRLAPEKFVSVCKRLKDLVTLLEAPIRGVAPMFTALRKLQ 134
QAE VPI+ RFI ACS EQIRLAP+KF+SVCKRLKD V LLEAPIRGVAP+F ALRKLQ
Sbjct: 20 QAEVVVPIVTRFIGACSTEQIRLAPDKFLSVCKRLKDQVMLLEAPIRGVAPLFNALRKLQ 199
Query: 135 VSAEHL 140
EHL
Sbjct: 200 ALGEHL 217
Score = 43.9 bits (102), Expect(2) = 9e-30
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = +3
Query: 142 PLHAEFLMLCLLAKCYKTGLSIL 164
P H+E ++LCLLAKCYKTGLSIL
Sbjct: 222 PFHSELVLLCLLAKCYKTGLSIL 290
>BF325025 similar to PIR|F86422|F86 carbamoyl-phosphate synthase (ammonia)
(EC 6.3.4.16) - Arabidopsis thaliana, partial (2%)
Length = 420
Score = 30.4 bits (67), Expect = 0.73
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 182 YYGCVAFFFSFELEKRDRCRICSYISVLHFSYITYCNFFNIL 223
Y GC A+F SF +I++LH++YI + N F +
Sbjct: 288 YLGCAAYFESF------------WIALLHYAYIRFVNIFGFV 377
>BI427413
Length = 422
Score = 28.9 bits (63), Expect = 2.1
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 183 YGCVAFFFSFELEKRDRCRICSYISVLHFSYITYCNFFNILDLFFTSFS 231
+ ++FF F + D C I + HF++ C FFNI F ++S
Sbjct: 85 FSILSFFLLFFVCSYDTCNIVT----THFNFFFSCIFFNIFSEFLFNWS 219
>TC211336 weakly similar to UP|Q8GVD9 (Q8GVD9) Cyclin D3, partial (28%)
Length = 1351
Score = 28.5 bits (62), Expect = 2.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 203 CSYISVLHFSYITYCNFFNILDLFFTSF 230
CS ++++ FS++ N FN+ LF T F
Sbjct: 1195 CSILTIIIFSFVISVNLFNLHCLFTTDF 1278
>TC219971 UP|Q6T2Z4 (Q6T2Z4) Wee1, complete
Length = 1860
Score = 28.1 bits (61), Expect = 3.6
Identities = 15/36 (41%), Positives = 20/36 (54%), Gaps = 2/36 (5%)
Frame = +3
Query: 174 PRDLYLYCYYGCVAFFFSFELEKRDRCRI--CSYIS 207
P ++ YCYY FF SF L + RCR C ++S
Sbjct: 180 PTTVFYYCYY----FFRSFLLPEPSRCRSSQCVFLS 275
>AW569301
Length = 422
Score = 27.7 bits (60), Expect = 4.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 209 LHFSYITYCNFFNILDLFFT 228
LHF + YC FF L LFF+
Sbjct: 185 LHFMLVYYCPFFTCLFLFFS 244
>TC214502 UP|Q8XMT7 (Q8XMT7) Probable amino acid ABC transporter, partial
(5%)
Length = 1611
Score = 27.7 bits (60), Expect = 4.7
Identities = 11/24 (45%), Positives = 16/24 (65%)
Frame = +3
Query: 199 RCRICSYISVLHFSYITYCNFFNI 222
R R+CS+I ++H+ Y N FNI
Sbjct: 399 RSRLCSWI*MVHYESTMYFNCFNI 470
>AW734258
Length = 442
Score = 27.7 bits (60), Expect = 4.7
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +3
Query: 177 LYLYCYYGCVAFFFSFELEKRDRCRICSYISVLHFSYITYCNFFNILDLFFTSFSIKC 234
LY+Y Y A+ +F +K + + YI + FS F + L F S+S C
Sbjct: 174 LYIYIYTHTYAYMLTFSFDKCEAPHV--YIEYISFSSCWSSKFMQLSVLGFFSWSNVC 341
>TC221647
Length = 1210
Score = 27.7 bits (60), Expect = 4.7
Identities = 18/61 (29%), Positives = 32/61 (51%), Gaps = 2/61 (3%)
Frame = +3
Query: 177 LYLYCYYGCVAFFFSFELEKRDRCRICSYISVLHFSYITYCNFFNILDLFFTSF--SIKC 234
L+ + Y G + F F L + ++C ++ + S+ CNFF + +FTS +IKC
Sbjct: 957 LFCWPYGGSLPFIF*RILILFSKSKLCFFMFTV*TSHSYICNFFLNGNGYFTSALGNIKC 1136
Query: 235 R 235
+
Sbjct: 1137 K 1139
>CF922272
Length = 450
Score = 27.3 bits (59), Expect = 6.2
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = -1
Query: 156 CYKTGLSILDDDVFEVDHPRDLYLYCYYGCVAFFFSFELEKRDRCRICSYISVLHFSYIT 215
C T +S+L VF LYC +G ++ +K+ RC+IC I +L S
Sbjct: 318 CMLTAVSLLGTLVF---------LYCVWG----YYFA**QKKKRCQICHVIKLLVVSMHA 178
Query: 216 YCNFFNIL 223
+ + N L
Sbjct: 177 FSSTINHL 154
>TC228744 similar to UP|Q94A21 (Q94A21) AT5g15330/F8M21_220, partial (69%)
Length = 1196
Score = 27.3 bits (59), Expect = 6.2
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 203 CSYISVLHFSYITYCNFFNI-LDLFFTSFSI 232
CSYI ++ S + C FFNI L + SF+I
Sbjct: 1094 CSYIQSINTSQLVRCTFFNI*LGK*YLSFAI 1186
>TC233193
Length = 228
Score = 26.9 bits (58), Expect = 8.0
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -2
Query: 175 RDLYLYC-YYGCVAFFFSFELEKRDRC 200
R LYL C + ++ FFSF +R+RC
Sbjct: 185 RSLYLLCPIFTIISIFFSFSSMQRNRC 105
>BG510030 similar to GP|16226927|gb| At1g63720/F24D7_9 {Arabidopsis
thaliana}, partial (22%)
Length = 394
Score = 26.9 bits (58), Expect = 8.0
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +3
Query: 130 LRKLQVSAEHLTPLHAEFLMLCLLAKCYKTGLSILDDDVFEVDHPRDLYLY-CYY 183
+R+ S + PL +LM C+ +T S + + H R +LY C++
Sbjct: 117 IREFNTSTYYPIPLRCTYLMCCIFPSL-RTSFSCTIPKCYTISHSRRTFLYLCHW 278
>TC215180 homologue to UP|Q8LP17 (Q8LP17) Nine-cis-epoxycarotenoid
dioxygenase1, partial (26%)
Length = 708
Score = 26.9 bits (58), Expect = 8.0
Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 17/90 (18%)
Frame = -1
Query: 142 PLHAEFLMLCLLAKCYKTGLSILDDDVFEVDHPR-----------------DLYLYCYYG 184
P ++F +L L C+K G+ + + +++ DH +++ C
Sbjct: 441 PTFSQFPLLLQLFLCHKEGMETIWNSMWQFDHCNRIC*HCFCIDDMHKRFSGIFIMCKKN 262
Query: 185 CVAFFFSFELEKRDRCRICSYISVLHFSYI 214
V+ F F + RD I S+ ++L +S +
Sbjct: 261 QVSIIF-FRIRTRDTRDIYSFRTILPWSQV 175
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.329 0.142 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,673,620
Number of Sequences: 63676
Number of extensions: 185814
Number of successful extensions: 1581
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1578
length of query: 235
length of database: 12,639,632
effective HSP length: 94
effective length of query: 141
effective length of database: 6,654,088
effective search space: 938226408
effective search space used: 938226408
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.6 bits)
Medicago: description of AC138464.5