BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138453.14 - phase: 0
(1715 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 1109 0.0
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 1104 0.0
TC232995 228 2e-59
TC211311 weakly similar to UP|O24587 (O24587) Pol protein, parti... 228 2e-59
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 227 3e-59
TC213445 124 8e-49
BM143109 169 7e-42
AI959950 166 8e-41
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 166 8e-41
NP004897 gag-protease polyprotein 162 2e-39
BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Gl... 160 3e-39
CO983516 152 1e-36
AI855982 148 2e-35
AI966222 117 1e-31
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi... 131 2e-30
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 126 7e-29
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V... 124 4e-28
CO982036 124 5e-28
BI321712 122 1e-27
TC232593 weakly similar to UP|Q9XG91 (Q9XG91) Tpv2-1c protein (F... 120 7e-27
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 1109 bits (2869), Expect = 0.0
Identities = 658/1701 (38%), Positives = 944/1701 (54%), Gaps = 27/1701 (1%)
Frame = +1
Query: 37 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----RIHTPAQKKL 91
D + +WK M +F+ LD W + G + LD EG D T + +L
Sbjct: 49 DGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDEL 228
Query: 92 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 151
+ K + + + + ++ + AK + L EG+ KVK ++ +L ++E
Sbjct: 229 ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKMSRLQLLATKFEN 408
Query: 152 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDL 211
+MK++E I + + + + L + V KILRSLP R+ KVTAIEEA+D+
Sbjct: 409 LKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDI 588
Query: 212 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKISKSSKAYKASESEEESPDGDS 271
+ V++L+ SL+ E+ L++ KKSK++A S E EE+ D D+
Sbjct: 589 CNMRVDELIGSLQTFELGLSDR-AEKKSKNLAFVSN------------DEGEEDEYDLDT 729
Query: 272 DEDQSVKIAMLSNKLEYLARKQKK----------FLSKKGSYKNSKKEDQKG-------C 314
DE + + +L + + + K F +KGS K K+ D K C
Sbjct: 730 DEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGS-KYQKRSDVKPSHSKGIQC 906
Query: 315 FNCKKPGHFIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKEE 374
C+ GH IA+CP K+ KG S S D +SE SD
Sbjct: 907 HGCEGYGHIIAECPTHLKKHRKGLSVCQS-------------------DTESEQESD--- 1020
Query: 375 ADDDAKAAVGLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRTNEL 434
+D D A G+ T +ED ++ S+I EL S ++L E +
Sbjct: 1021 SDRDVNALTGIFET------------AEDSSDTDSEITFDELAASYRKLCIKSEKILQQE 1164
Query: 435 TDLKEKYVDLMKQQKSTLLELKASEEELKG-FNLISTTYEDRLKSLCQKLQEKCDKGSGN 493
LK+ DL ++++ E+ ELKG +++ E+ KS+ + +KGS
Sbjct: 1165 AQLKKVIADLEAEKEAHKEEIS----ELKGEVGFLNSKLENMTKSI-----KMLNKGSDT 1317
Query: 494 KHEIALDDFIMAGIDRSKVVSMIYSTYKNKG--KGIGYSEEKSKEYSLKSYCDCIKDGLK 551
LD+ ++ G KN G +G+G++ + + ++
Sbjct: 1318 -----LDEVLLLG--------------KNAGNQRGLGFNPKSAGRTTM------------ 1404
Query: 552 STFVP-EGTNAITAVQSKPEASGSQAKITSKPENLKIKVMTKSDPKSQKIKILKRSEPVH 610
+ FVP + T Q + G Q K KS K + +
Sbjct: 1405 TEFVPAKNRTGATMSQHRSRHHGMQQK--------------KSKRKKWRCHYCGK----- 1527
Query: 611 QNLIKPESKIPKQKDQKNKAATASEKTIPKGVKPKVLNDQKPLSIHPKVCLRAREKQRSW 670
IKP ++ S K + K K ++ L +H + A+E W
Sbjct: 1528 YGHIKPFCYHLHGHPHHGTQSSNSRKKMMWVPKHKAVS----LVVHTSLRASAKE---DW 1686
Query: 671 YLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTIGNSSI-SINNVWLVDG 729
YLDSGCSRHMTG K L + V FG GKIIG G + + + S+N V LV G
Sbjct: 1687 YLDSGCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKIIGMGKLVHDGLPSLNKVLLVKG 1866
Query: 730 LKHNLLSISQFCDNGYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINFSDLADQKVVC 789
L NL+SISQ CD G++V F+K+ C LV + + KG R ++ + C
Sbjct: 1867 LTANLISISQLCDEGFNVNFTKSEC-LVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTC 2043
Query: 790 LLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVKSSFK 849
L S D+ +WH+R GH + R + KI V+G+PN+ +CG CQ GK VK S +
Sbjct: 2044 LSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQ 2223
Query: 850 SKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFS 909
+TSR LELLH+DL GP+ SL G +Y V+VDD+SR+TWV FI+ K EVF
Sbjct: 2224 KLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSETFEVFK 2403
Query: 910 SFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNR 969
++Q EK+ I ++RSDHG EFEN F FC GI HEFS+ TPQQNG+VERKNR
Sbjct: 2404 ELSLRLQREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAAITPQQNGIVERKNR 2583
Query: 970 TLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISYFHQ 1029
TLQE AR M+H L + WAEA+NT+CYI NR+ +R T YE++KGR+P++ +FH
Sbjct: 2584 TLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFHI 2763
Query: 1030 FGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYKVYNSETQCVEESMHVKFDDREPG 1089
FG CYIL ++ +K D K+ GIFLGYS S+AY+V+NS T+ V ES++V DD P
Sbjct: 2764 FGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLSPA 2943
Query: 1090 SKTSEQSESNAGTTDSEDASESDQPSDSKKYTEVESSPEAEITPEAESNSEAEPSSKVQN 1149
K + + + DA++S + N+E S+ ++
Sbjct: 2944 RKKDVEEDVRTSGDNVADAAKSGE------------------------NAENSDSATDES 3051
Query: 1150 EIASEDFLDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEESLIGLLSIIEPK 1209
I D +T + + HP+ELIIG + TRS + S +S IEPK
Sbjct: 3052 NINQPDKRSST--------RIQKMHPKELIIGDPNRGVTTRSREVEIVSNSCFVSKIEPK 3207
Query: 1210 TVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPSQKNIIGTKWVFRNKLNEQGEVTRNK 1269
V+EAL+D+ WI AMQEEL QF+RN+VW+LVP+P N+IGTKW+F+NK NE+G +TRNK
Sbjct: 3208 NVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNK 3387
Query: 1270 ARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVESAFLNGVIEEE 1329
ARLVAQGY+Q EG+D+ ETFAPVARLE+IRLLL A LYQMDV+SAFLNG + EE
Sbjct: 3388 ARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEE 3567
Query: 1330 VYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRR 1389
VYV+QP GF D HPDHVY+LKK+LYGLKQAPRAWY+RL+ FL + + +G +D TLF +
Sbjct: 3568 VYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVK 3747
Query: 1390 TLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGV 1449
++++I QIYVDDI+FG + + + F + MQ EFEMS++GEL +FLG+Q+ Q ++ +
Sbjct: 3748 QDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSI 3927
Query: 1450 YVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTAS 1509
++ Q++Y K ++KKF +E+ TP LSK++ GT VDQ LYR MIGSLLYLTAS
Sbjct: 3928 FLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTAS 4107
Query: 1510 RPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYA 1569
RPDI ++V +CAR+Q++P+ SHLT VKRI +Y+ GT++ G++Y + L+G+CDAD+A
Sbjct: 4108 RPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMYCHCSNPMLVGYCDADWA 4287
Query: 1570 GDRIERKSTSENCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQLEDY 1629
G +RKSTS C +LG NLISW SK+Q +++STAEAEYI+A S C+QL+WMK L++Y
Sbjct: 4288 GSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEY 4467
Query: 1630 QINANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGILDIQFIDTEHQWA 1689
+ + + +YCDN +AI +SKNP+ HSR KHI+I+HH+IRD V ++ ++ +DTE Q A
Sbjct: 4468 NVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLKHVDTEEQIA 4647
Query: 1690 DIFTKPLSVERFDFIKKNLNM 1710
DIFTK L +F+ ++ L +
Sbjct: 4648 DIFTKALDANQFEKLRGKLGI 4710
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 1104 bits (2856), Expect = 0.0
Identities = 658/1706 (38%), Positives = 949/1706 (55%), Gaps = 27/1706 (1%)
Frame = +1
Query: 37 DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----RIHTPAQKKL 91
D + +WK M +F+ LD W + G + LD EG + T + +L
Sbjct: 49 DGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDEL 228
Query: 92 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 151
+ K + + + + ++ + AK + L EG+ KVK ++ +L ++E
Sbjct: 229 ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFEN 408
Query: 152 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDL 211
+MK++E I + + + + L + V KILRSLP R+ KVTAIEEA+D+
Sbjct: 409 LKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDI 588
Query: 212 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKISKSSKAYKASESEEESPDGDS 271
+ V++L+ SL+ E+ L++ T KKSK++A S E EE+ D D+
Sbjct: 589 CNMRVDELIGSLQTFELGLSDR-TEKKSKNLAFVSN------------DEGEEDEYDLDT 729
Query: 272 DEDQSVKIAMLSNK----LEYLARKQKK------FLSKKGSYKNSKKEDQKG-------C 314
DE + + +L + L + R+QK F +KGS + KK D+K C
Sbjct: 730 DEGLTNAVVLLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGS-EYQKKSDEKPSHSKGIQC 906
Query: 315 FNCKKPGHFIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKEE 374
C+ GH A+CP K++ KG S S +D +SE SD
Sbjct: 907 HGCEGYGHIKAECPTHLKKQRKGLSVCRS------------------DDTESEQESD--- 1023
Query: 375 ADDDAKAAVGLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRTNEL 434
+D D A G + +ED ++ S+I EL S +EL E +
Sbjct: 1024 SDRDVNALTGRFES------------AEDSSDTDSEITFDELAISYRELCIKSEKILQQE 1167
Query: 435 TDLKEKYVDLMKQQKSTLLELKASEEELKG-FNLISTTYEDRLKSLCQKLQEKCDKGSGN 493
LK+ +L ++++ E+ ELKG +++ E+ KS+ + +KGS
Sbjct: 1168 AQLKKVIANLEAEKEAHEEEIS----ELKGEVGFLNSKLENMTKSI-----KMLNKGSD- 1317
Query: 494 KHEIALDDFIMAGIDRSKVVSMIYSTYKNKG--KGIGYSEEKSKEYSLKSYCDCIKDGLK 551
LD+ + G KN G +G+G++ + + ++
Sbjct: 1318 ----MLDEVLQLG--------------KNVGNQRGLGFNHKSAGRTTM------------ 1407
Query: 552 STFVP-EGTNAITAVQSKPEASGSQAKITSKPENLKIKVMTKSDPKSQKIKILKRSEPVH 610
+ FVP + + T Q + G+Q K KS K + +
Sbjct: 1408 TEFVPAKNSTGATMSQHRSRHHGTQQK--------------KSKRKKWRCHYCGK----- 1530
Query: 611 QNLIKPESKIPKQKDQKNKAATASEKTIPKGVKPKVLNDQKPLSIHPKVCLRAREKQRSW 670
IKP +++S + + K K+++ L +H + A+E W
Sbjct: 1531 YGHIKPFCYHLHGHPHHGTQSSSSGRKMMWVPKHKIVS----LVVHTSLRASAKE---DW 1689
Query: 671 YLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTIGNSSI-SINNVWLVDG 729
YLDSGCSRHMTG K + + V FG GKI G G + + + S+N V LV G
Sbjct: 1690 YLDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKLVHDGLPSLNKVLLVKG 1869
Query: 730 LKHNLLSISQFCDNGYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINFSDLADQKVVC 789
L NL+SISQ CD G++V F+K+ C LV + + KG R ++ + C
Sbjct: 1870 LTANLISISQLCDEGFNVNFTKSEC-LVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTC 2046
Query: 790 LLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVKSSFK 849
L S D+ +WH+R GH + R + KI V+G+PN+ +CG CQ GK VK S +
Sbjct: 2047 LFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQ 2226
Query: 850 SKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFS 909
+TSR LELLH+DL GP+ SL G +Y V+VDD+SR+TWV FI+ K EVF
Sbjct: 2227 KLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSDTFEVFK 2406
Query: 910 SFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNR 969
++Q EK+ I ++RSDHG EFEN F FC GI HEFS+ TPQQNG+VERKNR
Sbjct: 2407 ELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNR 2586
Query: 970 TLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISYFHQ 1029
TLQE AR M+H L + WAEA+NT+CYI NR+ +R T YE++KGR+P + +FH
Sbjct: 2587 TLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPTVKHFHI 2766
Query: 1030 FGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYKVYNSETQCVEESMHVKFDDREPG 1089
FG CYIL ++ +K D K+ GIFLGYS S+AY+V+NS T+ V ES++V DD P
Sbjct: 2767 FGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLTPA 2946
Query: 1090 SKTSEQSESNAGTTDSEDASESDQPSDSKKYTEVESSPEAEITPEAESNSEAEPSSKVQN 1149
K + + + D +D+ K E N+E S+ +
Sbjct: 2947 RKKDVEEDVR---------TSGDNVADTAKSAE---------------NAENSDSATDEP 3054
Query: 1150 EIASEDFLDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEESLIGLLSIIEPK 1209
I D +P + + HP+ELIIG + TRS + S +S IEPK
Sbjct: 3055 NINQPDK--------RPSIRIQKMHPKELIIGDPNRGVTTRSREIEIVSNSCFVSKIEPK 3210
Query: 1210 TVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPSQKNIIGTKWVFRNKLNEQGEVTRNK 1269
V+EAL+D+ WI AMQEEL QF+RN+VW+LVP+P N+IGTKW+F+NK NE+G +TRNK
Sbjct: 3211 NVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNK 3390
Query: 1270 ARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVESAFLNGVIEEE 1329
ARLVAQGY+Q EG+D+ ETFAPVARLE+IRLLL A LYQMDV+SAFLNG + EE
Sbjct: 3391 ARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEE 3570
Query: 1330 VYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRR 1389
YV+QP GF D HPDHVY+LKK+LYGLKQAPRAWY+RL+ FL + + +G +D TLF +
Sbjct: 3571 AYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVK 3750
Query: 1390 TLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGV 1449
++++I QIYVDDI+FG + + + F + MQ EFEMS++GEL +FLG+Q+ Q ++ +
Sbjct: 3751 QDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSI 3930
Query: 1450 YVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTAS 1509
++ Q+KY K ++KKF +E+ TP LSK++ GT VDQ LYR MIGSLLYLTAS
Sbjct: 3931 FLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTAS 4110
Query: 1510 RPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYA 1569
RPDI ++V +CAR+Q++P+ SHL VKRI +Y+ GT++ G++Y D L+G+CDAD+A
Sbjct: 4111 RPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSDSMLVGYCDADWA 4290
Query: 1570 GDRIERKSTSENCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQLEDY 1629
G +RKSTS C +LG NLISW SK+Q +++STAEAEYI+A S C+QL+WMK L++Y
Sbjct: 4291 GSADDRKSTSGGCFYLGTNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEY 4470
Query: 1630 QINANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGILDIQFIDTEHQWA 1689
+ + + +YCDN +AI +SKNP+ HSR KHI+I+HH+IRD V ++ ++ +DTE Q A
Sbjct: 4471 NVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLEHVDTEEQIA 4650
Query: 1690 DIFTKPLSVERFDFIKKNLNMHFVSD 1715
DIFTK L +F+ ++ L + + D
Sbjct: 4651 DIFTKALDANQFEKLRGKLGICLLED 4728
>TC232995
Length = 1009
Score = 228 bits (581), Expect = 2e-59
Identities = 108/173 (62%), Positives = 139/173 (79%)
Frame = +2
Query: 1332 VKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTL 1391
V+QPPGFE P+HVYKL+K+LYGLKQAPRAWY+RLSNFL++ +F RG+VDTTLF +
Sbjct: 2 VEQPPGFEISDKPNHVYKLQKALYGLKQAPRAWYERLSNFLLEKEFSRGKVDTTLFIKRK 181
Query: 1392 KKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYV 1451
DIL+VQIYVDDIIFGSTN SLCKEFS MQ EFEMSMMGELK+FLG+QI Q++ G+++
Sbjct: 182 HNDILLVQIYVDDIIFGSTNDSLCKEFSLDMQSEFEMSMMGELKYFLGLQIKQTQ*GIFI 361
Query: 1452 HQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLL 1504
+Q+KY KEL+K+F ++ K M+TPM C L K+++G +D K YR IG ++
Sbjct: 362 NQSKYCKELIKRFGMDSAKHMSTPMSTNCYLDKDESGQSIDIKQYRDAIGEVV 520
>TC211311 weakly similar to UP|O24587 (O24587) Pol protein, partial (15%)
Length = 1213
Score = 228 bits (580), Expect = 2e-59
Identities = 121/245 (49%), Positives = 159/245 (64%)
Frame = +3
Query: 1337 GFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDIL 1396
GFED + P HV+ + L L +F + D R K+ L
Sbjct: 330 GFEDKERPCHVFMV*NKL*ELGMKG*V------HF*FQMDSPEE*RTPHYSERLKKETFL 491
Query: 1397 IVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKY 1456
I+ IYVDDIIFG+T+ +CKEF +LM+D FE SM GELKF LG+QI Q G+++HQ KY
Sbjct: 492 IIHIYVDDIIFGATSKRMCKEFFELMKDGFETSMKGELKFLLGLQIIQKVYGIFIHQEKY 671
Query: 1457 TKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFS 1516
TK LK+F++++ K M TPMH + + K++ G K Y GMI SL YLT+SRPDI+F
Sbjct: 672 TKSHLKRFRMDEAKPMATPMHRSTIIDKDEKGNHTS*KEYSGMIDSLSYLTSSRPDIVFV 851
Query: 1517 VCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERK 1576
VCLCARFQS P+ SH+TAVKRI RYL GTTN L ++K ++ L+G+CD +AGD++ERK
Sbjct: 852 VCLCARFQSYPKISHVTAVKRILRYLVGTTNHCLWFKKRSEFDLLGYCDVYFAGDKVERK 1031
Query: 1577 STSEN 1581
STS N
Sbjct: 1032 STSRN 1046
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 227 bits (579), Expect = 3e-59
Identities = 108/153 (70%), Positives = 130/153 (84%)
Frame = -3
Query: 1222 LAMQEELNQFQRNDVWDLVPKPSQKNIIGTKWVFRNKLNEQGEVTRNKARLVAQGYSQQE 1281
+AMQEELNQF+RN+VW LV KP +IGTKWVFRNKL+E G + RNKARLVA+GY+Q+E
Sbjct: 461 IAMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEE 282
Query: 1282 GIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVESAFLNGVIEEEVYVKQPPGFEDL 1341
GIDY ET+APVARLE IR+LL+Y LYQMDV+SAFLNG+I+EEVYV+QPPGFE
Sbjct: 281 GIDYEETYAPVARLEVIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEIP 102
Query: 1342 KHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIK 1374
P HVYKL+K+LYGLKQAPRAWY+R+SNFL++
Sbjct: 101 DKPTHVYKLQKALYGLKQAPRAWYERISNFLLE 3
>TC213445
Length = 705
Score = 124 bits (311), Expect(2) = 8e-49
Identities = 57/98 (58%), Positives = 75/98 (76%)
Frame = +1
Query: 1572 RIERKSTSENCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQLEDYQI 1631
+ +R+STS+ C F+G L+SW SK+Q ++ +STAEAEYISA S Q+ WM+ QL DY +
Sbjct: 400 KTDRESTSDTCHFIGSALVSWHSKKQNSVVLSTAEAEYISARSYYAQIFWMRQQLFDYGL 579
Query: 1632 NANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIR 1669
+ IPI CDNT+AI LSKN IL+SR KHIEI+HHF+R
Sbjct: 580 KLDHIPIRCDNTSAINLSKNHILYSRTKHIEIRHHFLR 693
Score = 90.1 bits (222), Expect(2) = 8e-49
Identities = 40/68 (58%), Positives = 52/68 (75%)
Frame = +2
Query: 1499 MIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDY 1558
MI S LYL+ SRP I+FSVC+C R+Q++P+ESHL+ +KRI RYL G NLGL Y K+ Y
Sbjct: 197 MIESFLYLSTSRPHIMFSVCMCVRYQANPKESHLSVIKRIMRYLLGIINLGLWYPKNSSY 376
Query: 1559 KLIGFCDA 1566
L+G+ DA
Sbjct: 377 NLVGYSDA 400
>BM143109
Length = 415
Score = 169 bits (429), Expect = 7e-42
Identities = 83/137 (60%), Positives = 107/137 (77%)
Frame = +1
Query: 1334 QPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKK 1393
QPP ++ + P+HV+KLKK LYGLKQA RAWY+ LS FL+ F +G+VDT LF
Sbjct: 4 QPPVRKNSEKPNHVFKLKKVLYGLKQALRAWYELLSKFLLDKGFSKGKVDTNLFI*KKLN 183
Query: 1394 DILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQ 1453
DIL+VQIYVDDIIFGSTN SLCK+FS+ MQ+EFEMSMM EL FFLG+QI Q+K G+++ Q
Sbjct: 184 DILLVQIYVDDIIFGSTNDSLCKKFSQDMQNEFEMSMMRELNFFLGLQIKQTKNGIFISQ 363
Query: 1454 TKYTKELLKKFKLEDCK 1470
+KY K+L+ +F +E+ K
Sbjct: 364 SKYCKDLIHRFGMENDK 414
>AI959950
Length = 466
Score = 166 bits (420), Expect = 8e-41
Identities = 83/130 (63%), Positives = 104/130 (79%)
Frame = -1
Query: 1223 AMQEELNQFQRNDVWDLVPKPSQKNIIGTKWVFRNKLNEQGEVTRNKARLVAQGYSQQEG 1282
AMQEEL+QFQ+N+V LV P +K ++G KW+F NKL+E G+V R KARLVA+GYSQQEG
Sbjct: 391 AMQEELDQFQKNNV*KLVKLPKRKKVVGVKWIFCNKLDEDGKVVRYKARLVAKGYSQQEG 212
Query: 1283 IDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVESAFLNGVIEEEVYVKQPPGFEDLK 1342
IDY +TFA VARLE I +LLS+A + LYQMDV+SAFLNG+I++EVYV+QPPGFE+
Sbjct: 211 IDYPKTFALVARLEVICILLSFATYSNMKLYQMDVKSAFLNGLIQKEVYVEQPPGFENET 32
Query: 1343 HPDHVYKLKK 1352
HV+KL K
Sbjct: 31 LHQHVFKLNK 2
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
(7%)
Length = 804
Score = 166 bits (420), Expect = 8e-41
Identities = 91/222 (40%), Positives = 135/222 (59%), Gaps = 4/222 (1%)
Frame = +1
Query: 1491 VDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGL 1550
VD +R +IGSL YL SRP+I F+V L +RF PR SH+ A KR+ R +KGT G+
Sbjct: 7 VDVTEFRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGV 186
Query: 1551 LY---RKSLDYKLIGFCDADYAGDRIERKSTSENCQFLGENLISWASKRQATIAMSTAEA 1607
L+ KS L+G+ D+D+ D + KST + ++ +SK+Q IA+ST EA
Sbjct: 187 LFPFKAKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEA 366
Query: 1608 EYISAASCCTQLLWMKHQLEDYQINANS-IPIYCDNTAAICLSKNPILHSRAKHIEIKHH 1666
EY++A+ Q +WM + LE+ ++ + + DN +AI L+K+P LH R+KHIE++ H
Sbjct: 367 EYVAASLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFH 546
Query: 1667 FIRDYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNL 1708
+IRD V KG + +++ E Q AD+ TKP+ V RF I L
Sbjct: 547 YIRDQVSKGNVTVEYCKAEEQLADLMTKPIQVSRFKQICSEL 672
>NP004897 gag-protease polyprotein
Length = 1923
Score = 162 bits (409), Expect = 2e-39
Identities = 179/704 (25%), Positives = 293/704 (41%), Gaps = 26/704 (3%)
Frame = +1
Query: 37 DPEEFSWWKTNMYSFIMGLDEELWD-ILEDGVDDLDLDEEGAAID----RRIHTPAQKKL 91
D + +WK M +F+ LD W +++D LD EG D T + +L
Sbjct: 49 DGTNYEYWKARMVAFLKSLDSRTWKAVIKDWEHPKMLDTEGKPTDGLKPEEDWTKEEDEL 228
Query: 92 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 151
+ K + + + + ++ + AK + L EG+ KVK ++ +L ++E
Sbjct: 229 ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFEN 408
Query: 152 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDL 211
+MK++E I + + + + L + V KILRSLP R+ KVTAIEEA+D+
Sbjct: 409 LKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDI 588
Query: 212 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKISKSSKAYKASESEEESPDGDS 271
L V++L+ SL+ E+ L++ T KKSK++A S E EE+ D D+
Sbjct: 589 CNLRVDELIGSLQTFELGLSD-RTEKKSKNLAFVSN------------DEGEEDEYDLDT 729
Query: 272 DEDQSVKIAMLSNK----LEYLARKQK------KFLSKKGSYKNSKKEDQK-------GC 314
DE + + +L + L + R+QK F +KGS + K+ D+K C
Sbjct: 730 DEGLTNAVVLLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGS-EYQKRSDEKPSHSKGFQC 906
Query: 315 FNCKKPGHFIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKEE 374
C+ GH A+CP K++ KG S S +D +SE SD
Sbjct: 907 HGCEGYGHIKAECPTHLKKQRKGLSVCRS------------------DDTESEQESD--- 1023
Query: 375 ADDDAKAAVGLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRTNEL 434
+D D A G +ED ++ S+I EL S +EL E +
Sbjct: 1024SDRDVNALTGRF------------ESAEDSSDTDSEITFDELATSYRELCIKSEKILQQE 1167
Query: 435 TDLKEKYVDLMKQQKSTLLELKASEEELKG-FNLISTTYEDRLKSLCQKLQEKCDKGSGN 493
LK+ +L ++++ E+ ELKG +++ E+ KS+ + +KGS
Sbjct: 1168AQLKKVIANLEAEKEAHEEEI----SELKGEVGFLNSKLENMTKSI-----KMLNKGSD- 1317
Query: 494 KHEIALDDFIMAGIDRSKVVSMIYSTYKNKG--KGIGYSEEKSKEYSLKSYCDCIKDGLK 551
LD+ + G KN G +G+G++ + + ++
Sbjct: 1318----MLDEVLQLG--------------KNVGNQRGLGFNHKSAGRITM------------ 1407
Query: 552 STFVP-EGTNAITAVQSKPEASGSQAKITSKPENLKIKVMTKSDPKSQKIKILKRSEPVH 610
+ FVP + + T Q + G+Q K KS K + +
Sbjct: 1408TEFVPAKISTGATMSQHRSRHHGTQQK--------------KSKRKKWRCHYCGK----- 1530
Query: 611 QNLIKPESKIPKQKDQKNKAATASEKTIPKGVKPKVLNDQKPLSIHPKVCLRAREKQRSW 670
IKP +++S + + K K+++ L +H + A+E W
Sbjct: 1531YGHIKPFCYHLHGHPHHGTQSSSSRRKMMWVPKHKIVS----LVVHTSLRASAKE---DW 1689
Query: 671 YLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTI 714
YLDSGCSRHMTG K + + V FG GKI G G +
Sbjct: 1690YLDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKL 1821
>BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Glycine max},
partial (7%)
Length = 336
Score = 160 bits (406), Expect = 3e-39
Identities = 76/111 (68%), Positives = 91/111 (81%)
Frame = +3
Query: 1207 EPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPSQKNIIGTKWVFRNKLNEQGEVT 1266
EPK ++EA+ DD WI+ MQEELNQF+RN+VW LV KP +IGTKWVFRNKL+E G +
Sbjct: 3 EPKNIKEAIVDDNWIIVMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIII 182
Query: 1267 RNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDV 1317
RNKARLVA+GY+Q+EGIDY ET+APVARLEAIR+LL+YA LYQMDV
Sbjct: 183 RNKARLVAKGYNQEEGIDYEETYAPVARLEAIRMLLAYASIMNFKLYQMDV 335
>CO983516
Length = 724
Score = 152 bits (384), Expect = 1e-36
Identities = 74/120 (61%), Positives = 92/120 (76%)
Frame = +2
Query: 1289 FAPVARLEAIRLLLSYAINHGIILYQMDVESAFLNGVIEEEVYVKQPPGFEDLKHPDHVY 1348
F PVARLE+IRLLL A LYQMDV+SAFLNG + EEVYV+QP GF D HPDHVY
Sbjct: 365 FHPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFIDPTHPDHVY 544
Query: 1349 KLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFG 1408
+LKK+LYGLKQAPRAWY+RL+ L + + +G +D TLF + ++++I QIYVDDI+FG
Sbjct: 545 RLKKALYGLKQAPRAWYERLTELLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFG 724
>AI855982
Length = 484
Score = 148 bits (373), Expect = 2e-35
Identities = 78/161 (48%), Positives = 104/161 (64%)
Frame = +2
Query: 1175 PEELIIGSKDSPRRTRSHFRQEESLIGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRN 1234
P + IIG TR + + + +S+IEPK ++EA+ DD WI+AMQEELNQF+RN
Sbjct: 2 PLDNIIGDISKGVTTRHSLKDLCNNMAFVSMIEPKNIKEAIVDDNWIIAMQEELNQFERN 181
Query: 1235 DVWDLVPKPSQKNIIGTKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGIDYTETFAPVAR 1294
+VW LV KP +I TKWVFRNKL+E + +KARLVA+GY+Q +G+DY T+A +AR
Sbjct: 182 NVWKLVEKPDNYPVI*TKWVFRNKLDEHRIIIIHKARLVAEGYNQVDGLDYEHTYASIAR 361
Query: 1295 LEAIRLLLSYAINHGIILYQMDVESAFLNGVIEEEVYVKQP 1335
L I + LSY LY SA L+G++ EVYV QP
Sbjct: 362 L*VIIMPLSYVYIMNSTLYHYACVSALLHGLLLHEVYVDQP 484
>AI966222
Length = 430
Score = 117 bits (294), Expect(2) = 1e-31
Identities = 52/88 (59%), Positives = 70/88 (79%)
Frame = +1
Query: 973 EMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISYFHQFGC 1032
EMART +++N KHF AE +N CY+QN+IYIRP+L++T YEL+KGR+PNISYF+ F C
Sbjct: 1 EMARTTLNDNLTPKHF*AEVMNIVCYLQNKIYIRPILKRTPYELWKGRKPNISYFYPFRC 180
Query: 1033 TCYILNTKDYLKKFDAKAQRGIFLGYSE 1060
C+I+NTKD L K D+K+ GIF+ YS+
Sbjct: 181 KCFIINTKDNLGKIDSKSDCGIFIAYSK 264
Score = 39.3 bits (90), Expect(2) = 1e-31
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +2
Query: 1062 SKAYKVYNSETQCVEESMHVKFDDREPGSKTSEQSESNA 1100
SKA++VYNS T +EE++H++F +P + E ES A
Sbjct: 269 SKAFRVYNSGTLVIEEAIHIRFGKNKPNKELLELDESFA 385
>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
partial (34%)
Length = 407
Score = 131 bits (330), Expect = 2e-30
Identities = 65/131 (49%), Positives = 92/131 (69%)
Frame = -2
Query: 1240 VPKPSQKNIIGTKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIR 1299
VP P K +G +WV+ K+ GEV R KARLVA+GY+Q GIDY +TF+PVA+L +R
Sbjct: 406 VPLPPGKTPVGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVR 227
Query: 1300 LLLSYAINHGIILYQMDVESAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQ 1359
L L+ A L+Q+D+++AFL+G +EE++Y++QPPGF V KL +SLYGLKQ
Sbjct: 226 LFLAMAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPPGFVAQGEYGLVCKLHRSLYGLKQ 47
Query: 1360 APRAWYDRLSN 1370
+PRAW+ + S+
Sbjct: 46 SPRAWFGKFSH 14
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
(30%)
Length = 687
Score = 126 bits (317), Expect = 7e-29
Identities = 63/154 (40%), Positives = 94/154 (60%), Gaps = 1/154 (0%)
Frame = +2
Query: 1559 KLIGFCDADYAGDRIERKSTSENCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQ 1618
+L G+CDAD+AG ++R+STS C F+G NL+SW SK+Q +A S+AEAEY S A +
Sbjct: 14 QLSGYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMVTCE 193
Query: 1619 LLWMKHQLEDYQI-NANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGIL 1677
L+W+K L++ + + +YCDN AA+ ++ NP+ H R KHIEI HFIR+ + +
Sbjct: 194 LMWIKQFLQELRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLLSKEI 373
Query: 1678 DIQFIDTEHQWADIFTKPLSVERFDFIKKNLNMH 1711
+FI + Q DI TK L + + L +
Sbjct: 374 VTEFIGSNDQPVDILTKSLRGPKIQIVCSKLGAY 475
>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
vinifera}, partial (34%)
Length = 409
Score = 124 bits (311), Expect = 4e-28
Identities = 59/134 (44%), Positives = 88/134 (65%)
Frame = +3
Query: 1202 LLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPSQKNIIGTKWVFRNKLNE 1261
L S+ P T+ EAL GW AM +E+ + N W+LVP P K +G +WV+ K+
Sbjct: 3 LSSLTVPSTIREALDHPGWRQAMVDEMQALENNGTWELVPLPPGKTTVGCRWVYTVKVGP 182
Query: 1262 QGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVESAF 1321
G+V R KARLVA+GY+Q GI+Y +TF+PV L +RL L+ A L+Q+D+++AF
Sbjct: 183 NGKVDRLKARLVAKGYTQVYGIEYCDTFSPVFFLTTVRLFLAMAAIRHWPLHQLDIKNAF 362
Query: 1322 LNGVIEEEVYVKQP 1335
L+G +EE++Y++QP
Sbjct: 363 LHGDLEEDIYMEQP 404
>CO982036
Length = 674
Score = 124 bits (310), Expect = 5e-28
Identities = 72/207 (34%), Positives = 120/207 (57%), Gaps = 4/207 (1%)
Frame = -2
Query: 1400 IYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKE 1459
+YVD II GS+ +L + + + F + ++G+L +F+ I++ + ++ +T +
Sbjct: 640 VYVDIIITGSS-CTLIQNLTSKLNSSFPLKLLGKLDYFVEIEVKSMPDLLFSLRTSIFEI 464
Query: 1460 LLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCL 1519
+K + + + +++PM TC LSK D+ YR ++G+L Y T RP+I F+V
Sbjct: 463 FCRKPR*Q-AQPISSPMTTTCKLSKSDSDLFSGPTFYRSVVGALQYTTVIRPEISFAVNK 287
Query: 1520 CARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYK---LIGFCDADYAGDRIERK 1576
+F S+P +SH T VKRI RYLKG+ + GL + ++ + + GFCDAD+A +++
Sbjct: 286 VCQFMSNPLDSHWTEVKRILRYLKGSLSYGL*LKPAISSQPLPIRGFCDADWASAVDDKR 107
Query: 1577 STSENCQFLGENLIS-WASKRQATIAM 1602
STS FLG NLIS W K+Q A+
Sbjct: 106 STSGAAVFLGPNLISWWXXKQQVAFAV 26
>BI321712
Length = 399
Score = 122 bits (307), Expect = 1e-27
Identities = 58/124 (46%), Positives = 85/124 (67%)
Frame = -3
Query: 1400 IYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKE 1459
+YVDD+IF N S+ +EF K M +EFEM+ MG + ++LGI++ Q +G+++ Q Y KE
Sbjct: 379 LYVDDLIFTGNNPSMFEEFKKDMSNEFEMTDMGLMAYYLGIEVKQEDKGIFITQEGYAKE 200
Query: 1460 LLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCL 1519
+LKKFK++D + TPM LSK + G VD LY+ +IGSL YLT +RPDIL+ V +
Sbjct: 199 VLKKFKMDDANPVGTPMECGSKLSKHEKGENVDPTLYKSLIGSLRYLTCTRPDILYVVGV 20
Query: 1520 CARF 1523
+R+
Sbjct: 19 VSRY 8
>TC232593 weakly similar to UP|Q9XG91 (Q9XG91) Tpv2-1c protein (Fragment),
partial (16%)
Length = 562
Score = 120 bits (300), Expect = 7e-27
Identities = 57/122 (46%), Positives = 85/122 (68%)
Frame = +1
Query: 1396 LIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTK 1455
LIV +YVDD++ +A L +EF + M FEM+ +G + +FLGI+I QS+ V + Q K
Sbjct: 193 LIVSLYVDDLLVTRDDARLVEEFKQEMMQAFEMTNLGLMTYFLGIEIKQSQNKVLICQRK 372
Query: 1456 YTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILF 1515
Y KE+LKKF++E+CK ++TPM+ +K D +D+ YR +IG L+YLTA+RPDILF
Sbjct: 373 YAKEILKKFQMEECKSVSTPMNQKEKFNKVDGADKIDEGYYRSLIGCLMYLTATRPDILF 552
Query: 1516 SV 1517
++
Sbjct: 553 AI 558
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.314 0.131 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,655,527
Number of Sequences: 63676
Number of extensions: 934981
Number of successful extensions: 4327
Number of sequences better than 10.0: 194
Number of HSP's better than 10.0 without gapping: 4161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4277
length of query: 1715
length of database: 12,639,632
effective HSP length: 110
effective length of query: 1605
effective length of database: 5,635,272
effective search space: 9044611560
effective search space used: 9044611560
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 66 (30.0 bits)
Medicago: description of AC138453.14