BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138452.7 + phase: 0 /pseudo
(677 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC233070 weakly similar to UP|Q9LRP0 (Q9LRP0) Emb|CAB39405.1, pa... 202 4e-52
TC222533 similar to UP|Q9SKV9 (Q9SKV9) F5J5.11, partial (11%) 185 5e-47
CA801099 109 5e-24
TC213927 109 5e-24
BM309049 75 3e-15
BM892534 weakly similar to GP|24414144|dbj P0005C02.7 {Oryza sat... 75 1e-13
TC220400 74 2e-13
AW756920 similar to GP|7715599|gb|A F20B17.17 {Arabidopsis thali... 65 1e-10
BI470135 weakly similar to GP|7715599|gb| F20B17.17 {Arabidopsis... 59 5e-09
BQ576554 49 7e-06
TC213268 44 2e-04
TC224263 weakly similar to UP|Q6GQH4 (Q6GQH4) Egr1 protein, part... 37 0.029
TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {A... 35 0.11
BE059564 33 0.54
TC207432 similar to UP|UCRH_YEAST (P00127) Ubiquinol-cytochrome ... 32 0.70
BU551036 32 0.70
TC230133 weakly similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%) 32 0.70
CA938908 31 1.6
TC215203 similar to UP|Q70Z19 (Q70Z19) Nucleosome assembly prote... 31 1.6
TC215451 weakly similar to UP|Q94K07 (Q94K07) Nucleosome assembl... 31 2.0
>TC233070 weakly similar to UP|Q9LRP0 (Q9LRP0) Emb|CAB39405.1, partial (28%)
Length = 765
Score = 202 bits (514), Expect = 4e-52
Identities = 104/255 (40%), Positives = 159/255 (61%), Gaps = 1/255 (0%)
Frame = +2
Query: 178 RLLLSFFYNNAISFNVARSDEYLKMFELVAKHGIGFKPLSYDEIRNKYLNYFYGEIGKDL 237
R + FFY+ I A S + KM E+V ++G G + + ++L I L
Sbjct: 2 RAICKFFYHAGIPIQAADSLYFHKMLEVVGQYGQGLVCPASQLMSGRFLQEEINSIKNYL 181
Query: 238 EAHRAVWEKCGCIIMTDGWTDRRRRTILNFLVHSPKGTFFLKSIDPSDITKTADKIFKMI 297
++A W GC IM D W D + RTI+NFLV P G +F+ S+D +++ + A +FK++
Sbjct: 182 VEYKASWAITGCSIMADSWIDTQGRTIINFLVSCPHGVYFVSSVDATNVVEDAPNLFKLL 361
Query: 298 DDVVEEIGEENVVQVVTDNAANYKAAGELLMEKRPHLYWTPCAAHCIDLMLEDFEKKIPL 357
D +VEE+GEENVVQV+T+N NYKAAG++L EKR +L+WTPCA +CI+ MLEDF KI
Sbjct: 362 DKIVEEVGEENVVQVITENTPNYKAAGKMLEEKRRNLFWTPCATYCINRMLEDF-TKIRC 538
Query: 358 HTDAISKGKTITTYIYGRTSLISLL-HKFTNDVDSIRPAMTHFATSYLTLGCLNEHQNQL 416
+ + KG+ IT IY + L++L+ +FT + ++P+ T FA+S+ TL L +H+ L
Sbjct: 539 VEECMEKGQKITKLIYNQIWLLNLMKSEFTEGQELLKPSATRFASSFATLQSLLDHRVGL 718
Query: 417 IDLFKSNEWKTSKLA 431
+F SN+W +S+ +
Sbjct: 719 RRMFLSNKWISSRFS 763
>TC222533 similar to UP|Q9SKV9 (Q9SKV9) F5J5.11, partial (11%)
Length = 596
Score = 185 bits (470), Expect = 5e-47
Identities = 97/199 (48%), Positives = 127/199 (63%)
Frame = +3
Query: 311 QVVTDNAANYKAAGELLMEKRPHLYWTPCAAHCIDLMLEDFEKKIPLHTDAISKGKTITT 370
QVVTDN +NY AG+LL EKR H+YWTPCAAHCIDLMLED K +PL I + +
Sbjct: 3 QVVTDNGSNYILAGKLLEEKRKHIYWTPCAAHCIDLMLEDIGK-LPLIRKTIRRAINLVG 179
Query: 371 YIYGRTSLISLLHKFTNDVDSIRPAMTHFATSYLTLGCLNEHQNQLIDLFKSNEWKTSKL 430
+IY +S +SLL FTN + +R A+T FATSYLTL L++ + + +F S+EW +KL
Sbjct: 180 FIYVHSSTLSLLRNFTNKRELVRHAITRFATSYLTLERLHKEKANIRKMFTSDEWTLNKL 359
Query: 431 AKSKDGKIVQNVVLSKVFWKDVLNCLRGAFPLVKVLCMVDWEEKAAMGYIYEEMDRAKEK 490
+K GK VVL FW V+ L+ PLVKVL +VD E K AM YIYE MD+AKE
Sbjct: 360 SKEPKGKEAAKVVLMPSFWNSVVYTLKVMAPLVKVLRLVDGERKPAMDYIYEAMDKAKET 539
Query: 491 IRTNFSGQARSYNPIWKII 509
I +F+ Y ++ ++
Sbjct: 540 IIKSFNNNENKYKDVFALV 596
>CA801099
Length = 438
Score = 109 bits (272), Expect = 5e-24
Identities = 61/138 (44%), Positives = 83/138 (59%), Gaps = 1/138 (0%)
Frame = +2
Query: 473 EKAAMGYIYEEMDRAKEKIRTNFSGQARSYNPIWKIIDDRWDRQLHRPLHAAGLFLNPML 532
+K AMGYIYE M++AKE IR +F Y +++IID RW QLH PLHAAG FLNP L
Sbjct: 17 KKPAMGYIYEAMEKAKEAIRKSFEYNESKYKEVFEIIDSRWTCQLHHPLHAAGHFLNPDL 196
Query: 533 RYA-PNFTVDDEIVNGMYACLRRMVADAEKRKKKLISNLRISTQRLENLVMTLLPMHLKL 591
++ + D E+VNG+Y CL ++V D E R +K+++ L + L LL L
Sbjct: 197 FFSNHSMEFDFEVVNGLYVCLEKLVPDQEVR-QKILTELPFIKWVVVCLEQNLLFNKGAL 373
Query: 592 KHQLNGGNLMDLDIRNCS 609
HQ NGG MD ++ C+
Sbjct: 374 SHQRNGGYHMDCQLQICN 427
>TC213927
Length = 662
Score = 109 bits (272), Expect = 5e-24
Identities = 56/163 (34%), Positives = 95/163 (57%), Gaps = 1/163 (0%)
Frame = +1
Query: 184 FYNNAISFNVARSDEYLKMFELVAKHGI-GFKPLSYDEIRNKYLNYFYGEIGKDLEAHRA 242
FY++ + F++AR+ Y K F A + I G++P Y+++R + L+ +
Sbjct: 163 FYSSGLPFHLARNPHYRKTFVYAANNKINGYQPRGYNKLRTTLFQNERRHVENLLQPIKN 342
Query: 243 VWEKCGCIIMTDGWTDRRRRTILNFLVHSPKGTFFLKSIDPSDITKTADKIFKMIDDVVE 302
W + G I++DGW+D +RR+++NF+V + FLK+ID S+ K + I K + +V+
Sbjct: 343 AWSQKGVSIVSDGWSDPQRRSLINFMVVTESRPMFLKAIDCSNEIKDKNFIAKHMREVIM 522
Query: 303 EIGEENVVQVVTDNAANYKAAGELLMEKRPHLYWTPCAAHCID 345
E+G N VQ+VTDN A KA ++ + P +YWTPC H ++
Sbjct: 523 EVGHSN-VQIVTDNVAVCKATSLIIKAEFPSIYWTPCVVHTLN 648
>BM309049
Length = 430
Score = 75.1 bits (183), Expect(2) = 3e-15
Identities = 38/106 (35%), Positives = 58/106 (53%)
Frame = +3
Query: 332 PHLYWTPCAAHCIDLMLEDFEKKIPLHTDAISKGKTITTYIYGRTSLISLLHKFTNDVDS 391
P LYW+PCA CI+LML+D K+ ++ +S IT YIY + L+ K+T D
Sbjct: 9 PKLYWSPCATQCINLMLDDI-MKLEEVSEIVSLASKITKYIYNHYYSLYLMRKYTGGKDI 185
Query: 392 IRPAMTHFATSYLTLGCLNEHQNQLIDLFKSNEWKTSKLAKSKDGK 437
+ PA T AT+++ L + H++ L + S +W +S AK K
Sbjct: 186 LGPAPTQSATNFIALQSILAHKDALRAMVTSRDWTSSAYAKESKAK 323
Score = 25.4 bits (54), Expect(2) = 3e-15
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 437 KIVQNVVLSKVFWKDVLNCLRGAFPLVKVLCMVD 470
KIV+ ++ S+ FWK + ++ PLV VL +VD
Sbjct: 325 KIVEQILDSR-FWKKCADIVKLTEPLVHVLQIVD 423
>BM892534 weakly similar to GP|24414144|dbj P0005C02.7 {Oryza sativa
(japonica cultivar-group)}, partial (6%)
Length = 430
Score = 74.7 bits (182), Expect = 1e-13
Identities = 39/110 (35%), Positives = 64/110 (57%)
Frame = -2
Query: 241 RAVWEKCGCIIMTDGWTDRRRRTILNFLVHSPKGTFFLKSIDPSDITKTADKIFKMIDDV 300
R W + G I++DG +D +RR ++NF+V + FLK+++ S K D I + + D
Sbjct: 384 RNSWNQKGVTIVSDGRSDPQRRPLINFMVVTESEPMFLKAVNCSGDIKDKDFIAQHMKDA 205
Query: 301 VEEIGEENVVQVVTDNAANYKAAGELLMEKRPHLYWTPCAAHCIDLMLED 350
+ ++G NVVQ+VTD A K G ++ + P +YWTP H +L L++
Sbjct: 204 IMKVGSSNVVQIVTD-AVLCKTIGMIIENEFPTIYWTPYVVHTSNLALKN 58
>TC220400
Length = 665
Score = 74.3 bits (181), Expect = 2e-13
Identities = 37/98 (37%), Positives = 54/98 (54%)
Frame = -2
Query: 183 FFYNNAISFNVARSDEYLKMFELVAKHGIGFKPLSYDEIRNKYLNYFYGEIGKDLEAHRA 242
F+Y +SFN+ + + M + ++G SY +IR L ++ HR
Sbjct: 295 FWYQAGLSFNLIKLKSFENMVAAIGQYGPHLPIPSYHDIRVPLLKKEVEYTENLMKGHRE 116
Query: 243 VWEKCGCIIMTDGWTDRRRRTILNFLVHSPKGTFFLKS 280
W K GC IM+D WTDR++R I+NFL++S GT FLKS
Sbjct: 115 QWVKYGCTIMSDAWTDRKQRCIINFLINSQAGTMFLKS 2
>AW756920 similar to GP|7715599|gb|A F20B17.17 {Arabidopsis thaliana},
partial (10%)
Length = 304
Score = 64.7 bits (156), Expect = 1e-10
Identities = 30/100 (30%), Positives = 52/100 (52%)
Frame = +2
Query: 251 IMTDGWTDRRRRTILNFLVHSPKGTFFLKSIDPSDITKTADKIFKMIDDVVEEIGEENVV 310
I+ D WTD I+ FLV SP T F K +D S K + + D V++E G +NV
Sbjct: 5 IIADTWTDYTSEAIIYFLVSSPSRTVFHKCVDASAYFKNTKWLADLFDSVIQEFGSDNVG 184
Query: 311 QVVTDNAANYKAAGELLMEKRPHLYWTPCAAHCIDLMLED 350
Q++ D NY A +++ + ++ + C + ++L ++
Sbjct: 185 QMIMDGCVNYTAIAHHIVQMKRTIFVSSCGSQWLNLFYDE 304
>BI470135 weakly similar to GP|7715599|gb| F20B17.17 {Arabidopsis thaliana},
partial (26%)
Length = 421
Score = 59.3 bits (142), Expect = 5e-09
Identities = 37/135 (27%), Positives = 73/135 (53%), Gaps = 2/135 (1%)
Frame = +1
Query: 334 LYWTPCAAHCIDLMLEDFEKKIPLHTDAISKGKTITTYIYGRTSLISLLHKFTNDVDSIR 393
++ +PC + C++L+ E+F K+ + I + +TI IY SL+ L+ K+T + IR
Sbjct: 4 IFVSPCGSQCLNLI*EEF-SKVDWISRCILQAQTI*NLIYNNASLLDLMKKYTGGQELIR 180
Query: 394 PAMTHFATSYLTLGCLNEHQNQLIDLFKSNEW--KTSKLAKSKDGKIVQNVVLSKVFWKD 451
+T +++L+L + + + +L ++F S+E+ TS K + + + FW+
Sbjct: 181 TGITKSVSTFLSLQSMLKLRTRLKNMFHSHEYASNTSNANKPQSLSCIA-IAEDGDFWRT 357
Query: 452 VLNCLRGAFPLVKVL 466
V C+ + P +KVL
Sbjct: 358 VEECVAISEPFLKVL 402
>BQ576554
Length = 424
Score = 48.9 bits (115), Expect = 7e-06
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +3
Query: 39 DPAWEYAISTEPGSRRVQCKFCQLAFTGSAYRVKHHLAGTSRDVAVCPSVP 89
DP W++ I+ + ++V+C +C +G YR+K HLA S +V C P
Sbjct: 267 DPGWDHGIAQDERKKKVRCNYCGKIVSGGIYRLKQHLARVSGEVTYCEKAP 419
>TC213268
Length = 420
Score = 43.9 bits (102), Expect = 2e-04
Identities = 32/108 (29%), Positives = 48/108 (43%), Gaps = 1/108 (0%)
Frame = -2
Query: 35 GNKTDPAWEYAISTEPGSRR-VQCKFCQLAFTGSAYRVKHHLAGTSRDVAVCPSVPLDVK 93
G++ D W++ + +R+ V C FC T R K H DV C VP DVK
Sbjct: 341 GDRVDAFWKWNSLKDKNNRKSVTCDFCHKTTTRGISRAKRHQLQIKGDVGSCKKVPEDVK 162
Query: 94 KLMQDKVNKLQKKLLEKANLIVVDADGDKDGAADADLEIISGGRGKRK 141
M + +KK+ E A + + D++ D LEI GK++
Sbjct: 161 LEM---IAAYEKKIAETAAYMEAMQEEDEE-EEDGILEIARLKSGKKR 30
>TC224263 weakly similar to UP|Q6GQH4 (Q6GQH4) Egr1 protein, partial (8%)
Length = 790
Score = 37.0 bits (84), Expect = 0.029
Identities = 32/86 (37%), Positives = 43/86 (49%), Gaps = 2/86 (2%)
Frame = -2
Query: 580 LVMTLLPMHLKLKHQLNGGNLMDLDIRNCSGLL*EYLV*-HVAHQGVNGIGVLLKGLPSI 638
+VMTL + +L Q N G+ +I+NC L E V AH G
Sbjct: 765 IVMTLARLIEQLLKQGNSGD----EIQNCFTSLLEVSVRLKEAHDGKE------------ 634
Query: 639 DEEG-DNDDDEVEENEDEYDDDPYQE 663
DE+G DND++E +E+EDE DD Y E
Sbjct: 633 DEQGSDNDENEDDEDEDEDSDDDYDE 556
>TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;} , partial (46%)
Length = 902
Score = 35.0 bits (79), Expect = 0.11
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +2
Query: 639 DEEGDNDDDEVEENEDEYDDDP 660
DEE D+DDDE ++N+DE DD P
Sbjct: 344 DEEEDDDDDEGDDNDDEEDDAP 409
>BE059564
Length = 406
Score = 32.7 bits (73), Expect = 0.54
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 643 DNDDDEVEENEDEYDDDPYQEFPPA 667
D+DDDE ++ E++ DDD +E+ PA
Sbjct: 195 DDDDDETDDEEEDDDDDEDEEYVPA 269
>TC207432 similar to UP|UCRH_YEAST (P00127) Ubiquinol-cytochrome C reductase
complex 17 kDa protein (Mitochondrial hinge protein)
(Complex III polypeptide VI) , partial (14%)
Length = 773
Score = 32.3 bits (72), Expect = 0.70
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 638 IDEEGDNDDDEVEENEDEYDDDPY 661
+DE+ D DDDE +ENE+ D+D +
Sbjct: 1 VDEDEDEDDDEDDENEEYEDEDAF 72
>BU551036
Length = 340
Score = 32.3 bits (72), Expect = 0.70
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 638 IDEEGDNDDDEVEENEDEYDDDPY 661
+DE+ D DDDE +ENE+ D+D +
Sbjct: 41 VDEDEDEDDDEDDENEEYEDEDAF 112
>TC230133 weakly similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)
Length = 850
Score = 32.3 bits (72), Expect = 0.70
Identities = 16/28 (57%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +3
Query: 639 DEEGDND-DDEVEENEDEYDDDPYQEFP 665
DE+ DND DD E++EDE DDD +E P
Sbjct: 447 DEDDDNDEDDGDEDDEDEGDDDEDEESP 530
Score = 32.0 bits (71), Expect = 0.92
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 639 DEEGDNDDDEVEENEDEYDDDPYQEF 664
D E D+DDD V + ED+ DD+ ++F
Sbjct: 279 DTEDDDDDDNVNDGEDDNDDEEDEDF 356
>CA938908
Length = 392
Score = 31.2 bits (69), Expect = 1.6
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 375 RTSLISLLHKFTNDVDSIRPAMTHFATSYLTLGCLNEHQNQL 416
++S +SLLH ND+ I P M S + L C ++H + L
Sbjct: 10 KSSNLSLLHSSNNDIKGILPHMGPHEISRILLRCQSDHSSVL 135
>TC215203 similar to UP|Q70Z19 (Q70Z19) Nucleosome assembly protein 1-like
protein 1, partial (31%)
Length = 729
Score = 31.2 bits (69), Expect = 1.6
Identities = 11/21 (52%), Positives = 18/21 (85%)
Frame = +2
Query: 639 DEEGDNDDDEVEENEDEYDDD 659
DEEGD+DDDE E+ +++ +D+
Sbjct: 254 DEEGDDDDDEDEDEDEDGEDE 316
>TC215451 weakly similar to UP|Q94K07 (Q94K07) Nucleosome assembly protein,
partial (20%)
Length = 777
Score = 30.8 bits (68), Expect = 2.0
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 639 DEEGDNDDDEVEENEDEYDDDPYQE 663
DE+ + DDDE EE++D+ DDD E
Sbjct: 104 DEDIEEDDDEDEEDDDDDDDDDDDE 178
Score = 29.3 bits (64), Expect = 6.0
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +2
Query: 639 DEEGDNDDDEVEENEDEYDDDPYQE 663
D E D+D+DE ++++D+ DDD +E
Sbjct: 110 DIEEDDDEDEEDDDDDDDDDDDEEE 184
Score = 29.3 bits (64), Expect = 6.0
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 629 GVLLKGLPSIDEEGDNDDDEVEENEDEYDDD 659
G ++G D E D DD+++EE++DE ++D
Sbjct: 53 GEAIQGDEFGDLEDDEDDEDIEEDDDEDEED 145
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.321 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,939,844
Number of Sequences: 63676
Number of extensions: 396623
Number of successful extensions: 2883
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 2315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2640
length of query: 677
length of database: 12,639,632
effective HSP length: 104
effective length of query: 573
effective length of database: 6,017,328
effective search space: 3447928944
effective search space used: 3447928944
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Medicago: description of AC138452.7