TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC138451.9 - phase: 0 
         (68 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AI460575 weakly similar to GP|18150413|gb| gamma-glutamyltransfe...    75  6e-15
AW203399                                                               50  2e-07
BU964858                                                               27  2.6
TC227592 homologue to GB|BAC42746.1|26451290|AK118120 protein tr...    26  3.5
TC227591 homologue to GB|BAC42746.1|26451290|AK118120 protein tr...    26  3.5
TC226510 similar to GB|BAC55689.1|27817924|AP003940 contains EST...    26  4.5
TC219645 similar to UP|O23207 (O23207) Minor allergen, partial (...    25  7.7
AW307067                                                               25  7.7

>AI460575 weakly similar to GP|18150413|gb| gamma-glutamyltransferase {Allium
           cepa}, partial (23%)
          Length = 217

 Score = 75.1 bits (183), Expect = 6e-15
 Identities = 37/53 (69%), Positives = 42/53 (78%)
 Frame = +2

Query: 4   IHEGGHAVDAVVAAALCLGVVSSASSGIGGGAFMLLRLANCVAKAFDMRETAP 56
           + E GHA DA VA+ LC+  VS ASSG+GGGAFMLLRL N VAKA DMR+TAP
Sbjct: 59  LRERGHAQDAAVASCLCMRAVSPASSGLGGGAFMLLRLINGVAKALDMRDTAP 217


>AW203399 
          Length = 392

 Score = 50.1 bits (118), Expect = 2e-07
 Identities = 23/29 (79%), Positives = 26/29 (89%)
 Frame = +2

Query: 4   IHEGGHAVDAVVAAALCLGVVSSASSGIG 32
           + EGGHAVDA VA+ALCLGVVS ASSG+G
Sbjct: 305 LREGGHAVDAAVASALCLGVVSPASSGLG 391


>BU964858 
          Length = 161

 Score = 26.6 bits (57), Expect = 2.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 7   GGHAVDAVVAAALCLGVVSSASSGIGGG 34
           GG   ++VVAAA  +  VS +  G GGG
Sbjct: 78  GGGGGNSVVAAATAVAAVSGSRGGGGGG 161


>TC227592 homologue to GB|BAC42746.1|26451290|AK118120 protein transport
           protein subunit - like {Arabidopsis thaliana;} , partial
           (80%)
          Length = 574

 Score = 26.2 bits (56), Expect = 3.5
 Identities = 14/36 (38%), Positives = 20/36 (54%)
 Frame = +3

Query: 25  SSASSGIGGGAFMLLRLANCVAKAFDMRETAPLLAS 60
           SSAS+G+GGG+  +LR     A    +  T  L+ S
Sbjct: 204 SSASTGVGGGSSNMLRFYTDDAPGLKISPTVVLVMS 311


>TC227591 homologue to GB|BAC42746.1|26451290|AK118120 protein transport
           protein subunit - like {Arabidopsis thaliana;} , partial
           (80%)
          Length = 541

 Score = 26.2 bits (56), Expect = 3.5
 Identities = 14/36 (38%), Positives = 20/36 (54%)
 Frame = +1

Query: 25  SSASSGIGGGAFMLLRLANCVAKAFDMRETAPLLAS 60
           SSAS+G+GGG+  +LR     A    +  T  L+ S
Sbjct: 214 SSASTGVGGGSSNMLRFYTDDAPGLKISPTVVLVMS 321


>TC226510 similar to GB|BAC55689.1|27817924|AP003940 contains ESTs
           AU077521(C52420),AU077522(C52420) snRNP core Sm protein
           Sm-X5-like protein {Oryza sativa (japonica
           cultivar-group);} , complete
          Length = 562

 Score = 25.8 bits (55), Expect = 4.5
 Identities = 14/43 (32%), Positives = 20/43 (45%)
 Frame = +2

Query: 7   GGHAVDAVVAAALCLGVVSSASSGIGGGAFMLLRLANCVAKAF 49
           G H VD ++  A              G +F +LRL NC+A +F
Sbjct: 413 GFHKVDVILPTA-------------EGNSFQMLRLCNCIAFSF 502


>TC219645 similar to UP|O23207 (O23207) Minor allergen, partial (73%)
          Length = 1162

 Score = 25.0 bits (53), Expect = 7.7
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -3

Query: 7   GGHAVDAVVAAALCLGVVSSASSGIGGGAFMLLR 40
           GG     V AAA  +G  + ASS  GGG F+L R
Sbjct: 236 GGEIGGGVGAAAATVG--AGASSATGGGFFLL*R 141


>AW307067 
          Length = 430

 Score = 25.0 bits (53), Expect = 7.7
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = -2

Query: 17  AALCLGVVSSASS--GIGGG 34
           AALC+GV++S SS  G+G G
Sbjct: 105 AALCIGVIASFSSHRGVGRG 46


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.323    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,720,253
Number of Sequences: 63676
Number of extensions: 26869
Number of successful extensions: 177
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of query: 68
length of database: 12,639,632
effective HSP length: 44
effective length of query: 24
effective length of database: 9,837,888
effective search space: 236109312
effective search space used: 236109312
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)