BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138451.12 - phase: 0
(133 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC209365 weakly similar to UP|Q9M6T8 (Q9M6T8) Glycine-rich prote... 147 2e-36
TC227265 similar to UP|Q8W157 (Q8W157) Glycine-rich protein, par... 143 2e-35
AW311418 weakly similar to GP|15146252|gb| At2g05380/F16J10.7 {A... 137 1e-33
TC230183 homologue to UP|GLHR_ANTEL (P35409) Probable glycoprote... 70 3e-13
TC208705 homologue to UP|NO24_SOYBN (P04145) Nodulin 24 precurso... 70 4e-13
TC209891 weakly similar to UP|Q9LW52 (Q9LW52) Arabidopsis thalia... 65 1e-11
TC204084 UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-binding protein, co... 64 3e-11
TC204100 homologue to UP|Q93WA5 (Q93WA5) Ribosomal protein L32, ... 64 3e-11
TC204095 similar to UP|Q9MBF3 (Q9MBF3) Glycine-rich RNA-binding ... 56 4e-09
TC204085 similar to UP|Q8VX74 (Q8VX74) Glycine-rich RNA-binding ... 56 4e-09
TC204083 similar to UP|O48567 (O48567) Glycine-rich RNA-binding ... 55 1e-08
TC229391 weakly similar to UP|Q00484 (Q00484) Mini-collagen prec... 55 1e-08
TC204079 similar to UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-binding ... 54 2e-08
TC216231 similar to UP|Q41188 (Q41188) Glycine-rich protein 2 (G... 54 2e-08
TC207679 similar to UP|Q7XJI7 (Q7XJI7) Glycine-rich protein TomR... 52 8e-08
TC206176 weakly similar to UP|Q8LPA7 (Q8LPA7) Cold shock protein... 50 3e-07
TC219649 weakly similar to UP|Q95JD1 (Q95JD1) Basic proline-rich... 50 4e-07
TC214257 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 pr... 49 5e-07
TC214360 similar to UP|Q9MBF3 (Q9MBF3) Glycine-rich RNA-binding ... 49 7e-07
BU763328 similar to SP|P10496|GRP2_ Glycine-rich cell wall struc... 49 9e-07
>TC209365 weakly similar to UP|Q9M6T8 (Q9M6T8) Glycine-rich protein
(Fragment), partial (53%)
Length = 614
Score = 147 bits (370), Expect = 2e-36
Identities = 82/134 (61%), Positives = 93/134 (69%), Gaps = 8/134 (5%)
Frame = +2
Query: 8 LILGLLAIILLISSEVSARDLTEASSNTQKEADDQTNELNDAKY--GSYGGGYPGRGGGG 65
+ILGLLA+ LL+SSEV AS+N++ + TN + DAKY G YGGGYPG GGGG
Sbjct: 5 VILGLLAMFLLVSSEV-------ASANSK----EVTNGVEDAKYPGGGYGGGYPGNGGGG 151
Query: 66 --NYGGGYPRNRGGYPGNRGGNY---GGGYPGNRGGNYCRYGCCGDRYY-GSCRKCCSYA 119
GGGYP GGYPG RGG Y GGGYPG RGG YCRYGCCG R Y G CR+CC YA
Sbjct: 152 YPGRGGGYPGRGGGYPG-RGGGYPGRGGGYPG-RGGGYCRYGCCGGRTYNGGCRRCCYYA 325
Query: 120 GEAVAMQTENNTRN 133
GEAVA QT++ T N
Sbjct: 326 GEAVAAQTQDKTHN 367
>TC227265 similar to UP|Q8W157 (Q8W157) Glycine-rich protein, partial (37%)
Length = 825
Score = 143 bits (361), Expect = 2e-35
Identities = 82/143 (57%), Positives = 101/143 (70%), Gaps = 10/143 (6%)
Frame = +2
Query: 1 MDSKKAILILGLLAIILLISSEVSARDLTEASSNTQKEADDQTNELNDAKY--GSYGGGY 58
M K A+LILGL ++LL+SSEV AS+NT++EA N ++DAKY GSYGGGY
Sbjct: 59 MGLKMALLILGLSLMLLLVSSEV-------ASTNTKEEA----NGVDDAKYPGGSYGGGY 205
Query: 59 PGRGGGG---NYGGGYPRNRGG--YPGNRGGN--YGGGYPGNRGGNYCRYGCCGDR-YYG 110
PG GGGG + GGGYP + GG YPG+ GG+ +GGGYPG RGG YCR+GCCG R Y G
Sbjct: 206 PGHGGGGYPGHGGGGYPGHGGGGGYPGHGGGHPGHGGGYPG-RGGGYCRHGCCGGRTYNG 382
Query: 111 SCRKCCSYAGEAVAMQTENNTRN 133
CR+CC AGEAVA QT++ T +
Sbjct: 383 GCRRCCYNAGEAVAAQTQDKTHD 451
>AW311418 weakly similar to GP|15146252|gb| At2g05380/F16J10.7 {Arabidopsis
thaliana}, partial (50%)
Length = 482
Score = 137 bits (345), Expect = 1e-33
Identities = 78/140 (55%), Positives = 95/140 (67%), Gaps = 7/140 (5%)
Frame = +1
Query: 1 MDSKKAILILGLLAIILLISSEVSARDLTEASSNTQKEADDQTNELNDAKY--GSYGGGY 58
M K A+LILGL ++LL+SSEV AS+NT++EA N ++DAKY GSYGGGY
Sbjct: 67 MGLKMALLILGLSLMLLLVSSEV-------ASTNTKEEA----NGVDDAKYPGGSYGGGY 213
Query: 59 PGRGGGG----NYGGGYPRNRGGYPGNRGGNYGGGYPGNRGGNYCRYGCCGDR-YYGSCR 113
P GGGG GGGYP + GG+PG +GGGYPG RGG YCR+GCCG R Y G CR
Sbjct: 214 PXHGGGGYPGHGGGGGYPGHGGGHPG-----HGGGYPG-RGGGYCRHGCCGGRTYNGGCR 375
Query: 114 KCCSYAGEAVAMQTENNTRN 133
+CC AGEAVA QT++ T +
Sbjct: 376 RCCYNAGEAVAAQTQDKTHD 435
>TC230183 homologue to UP|GLHR_ANTEL (P35409) Probable glycoprotein hormone
G-protein coupled receptor precursor, partial (6%)
Length = 878
Score = 70.1 bits (170), Expect = 3e-13
Identities = 52/138 (37%), Positives = 69/138 (49%), Gaps = 28/138 (20%)
Frame = +1
Query: 1 MDSKK--AILILGLLAIILLISSEVSARDLTEASSNTQKEADDQTNELNDAKYGSYGGGY 58
MDSK+ A+LI GLLA+++LISS+V+AR+L E + YG +GGG
Sbjct: 40 MDSKRKIALLISGLLAMLILISSDVAARELKEVTGAGLSGG-------RGVNYGGFGGGS 198
Query: 59 PGRGGG------GNY-----GGGYPR----------NRGGYPGNRGGNY-----GGGYPG 92
PG GGG G++ GGG+P GG PG GG + GGG+PG
Sbjct: 199 PGFGGGFPGFGVGSFPGFGGGGGFPGFGGGGRFPGFGGGGSPGFGGGGFPGFGGGGGFPG 378
Query: 93 NRGGNYCRYGCCGDRYYG 110
GG + YG G +G
Sbjct: 379 FGGGGFPGYGGGGFPGFG 432
Score = 45.4 bits (106), Expect = 8e-06
Identities = 27/57 (47%), Positives = 33/57 (57%), Gaps = 12/57 (21%)
Frame = +1
Query: 52 GSYGGGYPGRGGGGNY----GGGYP-RNRGGYPGNRGGNY-----GGGY--PGNRGG 96
G GGG+PG GGGG + GGG+P GG+PG GG + GGG+ PG GG
Sbjct: 325 GFGGGGFPGFGGGGGFPGFGGGGFPGYGGGGFPGFGGGGFNNPGLGGGFNNPGLGGG 495
Score = 39.3 bits (90), Expect = 5e-04
Identities = 25/64 (39%), Positives = 29/64 (45%), Gaps = 11/64 (17%)
Frame = +1
Query: 52 GSYGGGYPGRGGGG----NYGGGYPR-------NRGGYPGNRGGNYGGGYPGNRGGNYCR 100
G GGG+PG GGGG GGG+ N G+ G GG GGG P + C
Sbjct: 400 GYGGGGFPGFGGGGFNNPGLGGGFNNPGLGGGFNNPGFGGVGGGI*GGG*P*RQAVVSCS 579
Query: 101 YGCC 104
CC
Sbjct: 580 ERCC 591
>TC208705 homologue to UP|NO24_SOYBN (P04145) Nodulin 24 precursor (N-24),
complete
Length = 486
Score = 69.7 bits (169), Expect = 4e-13
Identities = 55/143 (38%), Positives = 66/143 (45%), Gaps = 25/143 (17%)
Frame = +1
Query: 1 MDSKKAILILGLLAIILLISSEVSARDLTEASSNTQK-------------EADDQTNELN 47
M SK AILILGLLA++LLISSEV+AR+L EA Q+ EA +TNE+
Sbjct: 1 MGSKMAILILGLLAMLLLISSEVAARNLKEAGEAVQETNEVADAKLVAAGEAVQETNEVA 180
Query: 48 DAKYGSYGGGYPGRGGGGN---YGGGY--PRNRGGY------PGNRGGNYGGGYPGNRG- 95
D K G + GGG RN+ GY G GN+ GG G
Sbjct: 181 DTKLVGAGEAVQETNEVADTKLVGGGVVKQRNKVGYGKLVGVGGYDYGNWNGGQRSPYGT 360
Query: 96 GNYCRYGCCGDRYYGSCRKCCSY 118
G C GCC G C CC +
Sbjct: 361 GAICMRGCCFPSSLGGCLSCCPH 429
>TC209891 weakly similar to UP|Q9LW52 (Q9LW52) Arabidopsis thaliana genomic
DNA, chromosome 3, P1 clone: MLM24, partial (10%)
Length = 646
Score = 64.7 bits (156), Expect = 1e-11
Identities = 49/121 (40%), Positives = 61/121 (49%), Gaps = 9/121 (7%)
Frame = +1
Query: 5 KAILILGLLAIILLISSEVSARDLTEASSNTQKEADDQTNELNDAKYGSYGGGYPGR--G 62
K L++ LA++L +SSEVSARD E N +EA N DAK G +PG G
Sbjct: 61 KITLLIIPLAMLLFVSSEVSARDFQE--GNVVQEA----NNGGDAKLFGGGSFFPGGGIG 222
Query: 63 GGGNY--GGGYPRNRGG--YPGNRGGNYGGGYPGNRG---GNYCRYGCCGDRYYGSCRKC 115
GG Y GGG GG +PG GG GGG+ RG +C GCC + C +C
Sbjct: 223 GGAGYFPGGGIGGGGGGGFFPG--GGIGGGGFLPGRGFFNPRFCFRGCCFGNPFRGCLRC 396
Query: 116 C 116
C
Sbjct: 397 C 399
>TC204084 UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-binding protein, complete
Length = 1937
Score = 63.5 bits (153), Expect = 3e-11
Identities = 31/56 (55%), Positives = 31/56 (55%)
Frame = +2
Query: 51 YGSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGGNYCRYGCCGD 106
Y GGGY GR GGG GGGY GGY G GG GGGY G R Y R G GD
Sbjct: 1517 YNRGGGGYGGRSGGGGGGGGYRSRDGGYGGGYGGGGGGGYGGGRDRGYSRGGDGGD 1684
Score = 52.8 bits (125), Expect = 5e-08
Identities = 39/95 (41%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Frame = +2
Query: 20 SSEVSARDLTEASSNTQKEADDQTNELNDAKYGSYGGGYPGRGGGGNYGGGYPRNRGGYP 79
+SE S +D A + + D + +N+A+ S GGG GGGG GGGY R GGY
Sbjct: 1388 ASEQSMKDAIGAMNG--QNLDGRNITVNEAQ--SRGGG----GGGGGGGGGYNRGGGGYG 1543
Query: 80 GNRGGNYGG-GYPGNRGGNYCRYGCCGDRYYGSCR 113
G GG GG GY GG YG G YG R
Sbjct: 1544 GRSGGGGGGGGYRSRDGGYGGGYGGGGGGGYGGGR 1648
Score = 41.6 bits (96), Expect = 1e-04
Identities = 22/36 (61%), Positives = 24/36 (66%)
Frame = +2
Query: 52 GSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYG 87
G YGGGY G GGGG YGGG R+RG G GG+ G
Sbjct: 1592 GGYGGGYGG-GGGGGYGGG--RDRGYSRGGDGGDGG 1690
>TC204100 homologue to UP|Q93WA5 (Q93WA5) Ribosomal protein L32, complete
Length = 1145
Score = 63.5 bits (153), Expect = 3e-11
Identities = 31/56 (55%), Positives = 31/56 (55%)
Frame = -3
Query: 51 YGSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGGNYCRYGCCGD 106
Y GGGY GR GGG GGGY GGY G GG GGGY G R Y R G GD
Sbjct: 360 YNRGGGGYGGRSGGGGGGGGYRSRDGGYGGGYGGGGGGGYGGGRDRGYSRGGDGGD 193
Score = 50.1 bits (118), Expect = 3e-07
Identities = 35/88 (39%), Positives = 40/88 (44%), Gaps = 2/88 (2%)
Frame = -3
Query: 28 LTEASSNTQKEADDQTNELN-DAKYGSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNY 86
+T AS + K+A N N D + + GGGG GGGY R GGY G GG
Sbjct: 492 VTFASEQSMKDAIGAMNGQNLDGRNITVNEAQSRGGGGGGGGGGYNRGGGGYGGRSGGGG 313
Query: 87 GG-GYPGNRGGNYCRYGCCGDRYYGSCR 113
GG GY GG YG G YG R
Sbjct: 312 GGGGYRSRDGGYGGGYGGGGGGGYGGGR 229
Score = 48.9 bits (115), Expect = 7e-07
Identities = 35/85 (41%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Frame = -3
Query: 20 SSEVSARDLTEASSNTQKEADDQTNELNDAKYGSYGGGYPGRGGGGN-YGGGYPRNRGGY 78
+SE S +D A + + D + +N+A+ S GGG G GGG N GGGY GG
Sbjct: 483 ASEQSMKDAIGAMNG--QNLDGRNITVNEAQ--SRGGGGGGGGGGYNRGGGGYGGRSGGG 316
Query: 79 PG-----NRGGNYGGGYPGNRGGNY 98
G +R G YGGGY G GG Y
Sbjct: 315 GGGGGYRSRDGGYGGGYGGGGGGGY 241
Score = 41.6 bits (96), Expect = 1e-04
Identities = 22/36 (61%), Positives = 24/36 (66%)
Frame = -3
Query: 52 GSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYG 87
G YGGGY G GGGG YGGG R+RG G GG+ G
Sbjct: 285 GGYGGGYGG-GGGGGYGGG--RDRGYSRGGDGGDGG 187
>TC204095 similar to UP|Q9MBF3 (Q9MBF3) Glycine-rich RNA-binding protein,
partial (80%)
Length = 758
Score = 56.2 bits (134), Expect = 4e-09
Identities = 41/95 (43%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Frame = +3
Query: 20 SSEVSARDLTEASSNTQKEADDQTNELNDAKY-GSYGGGYPGRGGGGNYGGGYPRN--RG 76
+SE S RD E + + D + +N+A+ GS GGG GGG GGGY R+ G
Sbjct: 450 ASEDSMRDAIEGMNG--QNLDGRNITVNEAQSRGSRGGG----GGGYGSGGGYNRSGGAG 611
Query: 77 GYPGNRGGNY---GGGYPGNRGGNYCRYGCCGDRY 108
GY G R G Y GGGY G+R Y YG G RY
Sbjct: 612 GYGGRREGAYNRNGGGYGGDRDHRYGPYGDGGSRY 716
>TC204085 similar to UP|Q8VX74 (Q8VX74) Glycine-rich RNA-binding protein,
partial (87%)
Length = 628
Score = 56.2 bits (134), Expect = 4e-09
Identities = 41/95 (43%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Frame = +3
Query: 20 SSEVSARDLTEASSNTQKEADDQTNELNDAKY-GSYGGGYPGRGGGGNYGGGYPRN--RG 76
+SE S RD E + + D + +N+A+ GS GGG GGG GGGY R+ G
Sbjct: 174 ASEDSMRDAIEGMNG--QNLDGRNITVNEAQSRGSRGGG----GGGYGSGGGYNRSGGAG 335
Query: 77 GYPGNRGGNY---GGGYPGNRGGNYCRYGCCGDRY 108
GY G R G Y GGGY G+R Y YG G RY
Sbjct: 336 GYGGRREGAYNRNGGGYGGDRDHRYGPYGDGGSRY 440
>TC204083 similar to UP|O48567 (O48567) Glycine-rich RNA-binding protein,
partial (95%)
Length = 1019
Score = 55.1 bits (131), Expect = 1e-08
Identities = 40/94 (42%), Positives = 48/94 (50%)
Frame = +2
Query: 20 SSEVSARDLTEASSNTQKEADDQTNELNDAKYGSYGGGYPGRGGGGNYGGGYPRNRGGYP 79
+SE S +D A N Q + D + +N+A+ + GG G GGG GGGY R GGY
Sbjct: 206 ASEQSMKDAI-AGMNGQ-DLDGRNITVNEAQTRASRGG--GGGGGFGSGGGYNRGSGGYG 373
Query: 80 GNRGGNYGGGYPGNRGGNYCRYGCCGDRYYGSCR 113
G GG GGY G R G Y R G G YG R
Sbjct: 374 GGGGG---GGYGGRREGGYNRNGGGGGGGYGGGR 466
Score = 53.1 bits (126), Expect = 4e-08
Identities = 28/56 (50%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +2
Query: 51 YGSYGGGYPGRGGGGNYG----GGYPRNRGGYPGNRGGNYGGGYPGNRGGNYCRYG 102
Y GGY G GGGG YG GGY RN GG G GG GY G+ G Y R G
Sbjct: 347 YNRGSGGYGGGGGGGGYGGRREGGYNRNGGGGGGGYGGGRDRGYGGDGGSRYSRGG 514
Score = 45.8 bits (107), Expect = 6e-06
Identities = 28/57 (49%), Positives = 28/57 (49%)
Frame = +2
Query: 52 GSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGGNYCRYGCCGDRY 108
G Y G G GGGG GG R GGY N GG GGGY G R Y G G RY
Sbjct: 341 GGYNRGSGGYGGGGGGGGYGGRREGGYNRNGGGG-GGGYGGGRDRGYGGDG--GSRY 502
Score = 43.1 bits (100), Expect = 4e-05
Identities = 26/54 (48%), Positives = 27/54 (49%), Gaps = 12/54 (22%)
Frame = +2
Query: 52 GSYGGGYPGR----------GGGGNYGGGYPRNRGGYPGNR--GGNYGGGYPGN 93
G GGGY GR GGGG YGGG R GG G+R G GGG GN
Sbjct: 377 GGGGGGYGGRREGGYNRNGGGGGGGYGGGRDRGYGGDGGSRYSRGGEGGGSDGN 538
>TC229391 weakly similar to UP|Q00484 (Q00484) Mini-collagen precursor,
partial (30%)
Length = 795
Score = 54.7 bits (130), Expect = 1e-08
Identities = 42/99 (42%), Positives = 55/99 (55%), Gaps = 7/99 (7%)
Frame = +2
Query: 1 MDSKK--AILILGLLAIILLISSEVSARDLTEASSNTQKEADDQTNELNDAKYGSYGGGY 58
MDSK+ A+LI GLLA++L ISSEV+AR+L E + +N +G GGG
Sbjct: 38 MDSKRKIALLIFGLLAMLLFISSEVAARELKEVTGAGLSGG----RGVNFGGFGGIGGG- 202
Query: 59 PGRGGGGNYG-----GGYPRNRGGYPGNRGGNYGGGYPG 92
PG G N G G+P R G+PG G + G G+PG
Sbjct: 203 PGFRFGFNNGFPFFFPGFPSFR-GFPGFPGFSGGPGFPG 316
>TC204079 similar to UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-binding protein,
complete
Length = 748
Score = 54.3 bits (129), Expect = 2e-08
Identities = 41/106 (38%), Positives = 50/106 (46%), Gaps = 16/106 (15%)
Frame = +1
Query: 20 SSEVSARDLTEASSNTQKEADDQTNELNDAKYGSYGGGYPGRGGGGNY------------ 67
+SE S +D E + + D + +N+A+ S GGG G GGGG Y
Sbjct: 235 ASEQSMKDAIEGMNG--QNLDGRNITVNEAQ--SRGGGGGGGGGGGGYGGGRGGGYGGGG 402
Query: 68 ---GGGYPRNRGGYPGNRGGNYGGGYPGNRGGNYCR-YGCCGDRYY 109
GGGY R+ GG GG YGGG G GG R YG GDR Y
Sbjct: 403 RGGGGGYNRSGGGGGYGGGGGYGGGGGGGYGGGRDRGYGGGGDRGY 540
Score = 51.6 bits (122), Expect = 1e-07
Identities = 33/64 (51%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Frame = +1
Query: 52 GSYGGGYPGRGGGGNY-----GGGYPRNRGGYPGNRGGNYGG----GYPGNRGGNYCRYG 102
G YGGG GRGGGG Y GGGY GGY G GG YGG GY G Y R G
Sbjct: 382 GGYGGG--GRGGGGGYNRSGGGGGY-GGGGGYGGGGGGGYGGGRDRGYGGGGDRGYSRGG 552
Query: 103 CCGD 106
GD
Sbjct: 553 DGGD 564
Score = 33.9 bits (76), Expect = 0.023
Identities = 23/46 (50%), Positives = 24/46 (52%)
Frame = +1
Query: 51 YGSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGG 96
YG GG GGGG YGGG R GG G+RG Y G G GG
Sbjct: 448 YGGGGGYGG--GGGGGYGGGRDRGYGG-GGDRG--YSRGGDGGDGG 570
>TC216231 similar to UP|Q41188 (Q41188) Glycine-rich protein 2 (GRP2)
(AT4g38680/F20M13_240), partial (42%)
Length = 891
Score = 53.9 bits (128), Expect = 2e-08
Identities = 32/64 (50%), Positives = 32/64 (50%)
Frame = +3
Query: 52 GSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGGNYCRYGCCGDRYYGS 111
GSYG G GG G YGGG RGGY G GG GGGY G G YG G G
Sbjct: 78 GSYGXG----GGRGGYGGGGRGGRGGYGGGGGGYGGGGYGGGGG-----YGGGGGGGGGG 230
Query: 112 CRKC 115
C KC
Sbjct: 231 CYKC 242
Score = 46.6 bits (109), Expect = 3e-06
Identities = 33/79 (41%), Positives = 34/79 (42%), Gaps = 15/79 (18%)
Frame = +3
Query: 52 GSYGGGYPGR-----GGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGGNYCR----YG 102
G YGGG G GGGG YGGG GGY G GG GG Y G+ R G
Sbjct: 105 GGYGGGGRGGRGGYGGGGGGYGGGGYGGGGGYGGGGGGGGGGCYKCGETGHIARDCSQGG 284
Query: 103 CCGDRY------YGSCRKC 115
G RY GSC C
Sbjct: 285 GGGGRYGGGGGGGGSCYNC 341
Score = 27.3 bits (59), Expect = 2.1
Identities = 14/24 (58%), Positives = 14/24 (58%)
Frame = +3
Query: 53 SYGGGYPGRGGGGNYGGGYPRNRG 76
S GGG GR GGG GGG N G
Sbjct: 273 SQGGGGGGRYGGGGGGGGSCYNCG 344
Score = 27.3 bits (59), Expect = 2.1
Identities = 15/41 (36%), Positives = 17/41 (40%)
Frame = +3
Query: 60 GRGGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGGNYCR 100
G GGGG YGGG GG G Y G++ R
Sbjct: 279 GGGGGGRYGGG------------GGGGGSCYNCGESGHFAR 365
>TC207679 similar to UP|Q7XJI7 (Q7XJI7) Glycine-rich protein TomR2, partial
(22%)
Length = 425
Score = 52.0 bits (123), Expect = 8e-08
Identities = 26/50 (52%), Positives = 29/50 (58%)
Frame = +3
Query: 52 GSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGGNYCRY 101
G YGGG G GGGG+ GGG + GG G GG YGGG G GG + Y
Sbjct: 54 GGYGGGAAGGGGGGSGGGGGAGSGGG--GAHGGGYGGGAGGGEGGGHGGY 197
Score = 47.0 bits (110), Expect = 3e-06
Identities = 23/40 (57%), Positives = 25/40 (62%)
Frame = +3
Query: 52 GSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGGGYP 91
GS GGG G GGGG +GGGY GG G GG +GG YP
Sbjct: 93 GSGGGGGAGSGGGGAHGGGY---GGGAGGGEGGGHGGYYP 203
Score = 44.7 bits (104), Expect = 1e-05
Identities = 24/51 (47%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 47 NDAKYGSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGN-YGGGYPGNRGG 96
++ YGS GG G GGG GGG GG G+ GG +GGGY G GG
Sbjct: 18 HEGGYGSGGGSGGGYGGGAAGGGGGGSGGGGGAGSGGGGAHGGGYGGGAGG 170
Score = 37.7 bits (86), Expect = 0.002
Identities = 21/45 (46%), Positives = 25/45 (54%)
Frame = +3
Query: 52 GSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGG 96
G++ GGY G GG GGGY G G GG+ GGG G+ GG
Sbjct: 12 GAHEGGY---GSGGGSGGGYGGGAAG--GGGGGSGGGGGAGSGGG 131
Score = 33.9 bits (76), Expect = 0.023
Identities = 17/35 (48%), Positives = 18/35 (50%)
Frame = +3
Query: 62 GGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGG 96
G GG + GGY G G GG YGGG G GG
Sbjct: 3 GAGGAHEGGY-----GSGGGSGGGYGGGAAGGGGG 92
>TC206176 weakly similar to UP|Q8LPA7 (Q8LPA7) Cold shock protein-1, partial
(77%)
Length = 883
Score = 50.1 bits (118), Expect = 3e-07
Identities = 33/71 (46%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Frame = +3
Query: 52 GSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGG------------NYC 99
G GGG G GGGG YGGG GGY G GG YGGG G GG C
Sbjct: 318 GGRGGGGGGYGGGGGYGGG-----GGYGG--GGGYGGGGRGGGGGACYNCGESGHLARDC 476
Query: 100 RYGCCGDRYYG 110
G GDRY G
Sbjct: 477 SGGGGGDRYGG 509
Score = 43.5 bits (101), Expect = 3e-05
Identities = 33/86 (38%), Positives = 40/86 (46%)
Frame = +3
Query: 30 EASSNTQKEADDQTNELNDAKYGSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGGG 89
E+ S+ + +A D T + G+ GG GR GG GGG GGY G GG YGGG
Sbjct: 213 ESESDGRAKAVDVTGPDGASVQGTRRGGDGGRSYGGGRGGG----GGGYGG--GGGYGGG 374
Query: 90 YPGNRGGNYCRYGCCGDRYYGSCRKC 115
GG Y G G G+C C
Sbjct: 375 GGYGGGGGYGGGGRGGGG--GACYNC 446
Score = 41.6 bits (96), Expect = 1e-04
Identities = 24/55 (43%), Positives = 26/55 (46%), Gaps = 2/55 (3%)
Frame = +3
Query: 48 DAKYGSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGGG--YPGNRGGNYCR 100
D G G Y G GGGG YGGG G Y G GG GGG Y G++ R
Sbjct: 471 DCSGGGGGDRYGGGGGGGRYGGG---GGGRYVGGGGGGGGGGSCYSCGESGHFAR 626
Score = 39.3 bits (90), Expect = 5e-04
Identities = 31/75 (41%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Frame = +3
Query: 51 YGSYGGGYPGRGGGGNYGGGYPRNRGGY------PGNRGGNYGGGYPGNR--GGNYCRY- 101
YG GGGY G G GG G Y G+ G G YGGG G R GG RY
Sbjct: 381 YGG-GGGYGGGGRGGGGGACYNCGESGHLARDCSGGGGGDRYGGGGGGGRYGGGGGGRYV 557
Query: 102 -GCCGDRYYGSCRKC 115
G G GSC C
Sbjct: 558 GGGGGGGGGGSCYSC 602
>TC219649 weakly similar to UP|Q95JD1 (Q95JD1) Basic proline-rich protein,
partial (37%)
Length = 750
Score = 49.7 bits (117), Expect = 4e-07
Identities = 24/45 (53%), Positives = 27/45 (59%)
Frame = -1
Query: 51 YGSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRG 95
YG GG G GGGG GGGY GG G+ GG+YGGG G+ G
Sbjct: 750 YGGGPGGGVGPGGGGPVGGGYGGGPGGGAGSGGGSYGGGPGGDAG 616
Score = 43.5 bits (101), Expect = 3e-05
Identities = 26/52 (50%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Frame = -1
Query: 52 GSYGGGYPGRG---GGGNYGGGYPRNRG---GYPGNRGGNYGGGYPGNRGGN 97
G YGGG PG G GGG+YGGG + G G PG G GGY G GG+
Sbjct: 696 GGYGGG-PGGGAGSGGGSYGGGPGGDAGPGGGGPGGSAGPGSGGYGGGPGGD 544
Score = 41.6 bits (96), Expect = 1e-04
Identities = 32/67 (47%), Positives = 33/67 (48%), Gaps = 8/67 (11%)
Frame = -1
Query: 52 GSYGGGYPGRG---GGGNYGGGYPRNRGGYPGNRGGNYGGG-----YPGNRGGNYCRYGC 103
G YGGG PG G GGG GGG R GG PG+ G GGG Y G GG G
Sbjct: 384 GGYGGG-PGGGVGPGGGGPGGGAGRGGGG-PGSGAGPSGGGPGGGSYGGEPGGG----GP 223
Query: 104 CGDRYYG 110
GD Y G
Sbjct: 222 GGDGYGG 202
Score = 41.6 bits (96), Expect = 1e-04
Identities = 23/46 (50%), Positives = 24/46 (52%)
Frame = -1
Query: 51 YGSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGG 96
YG GG G GGGG GG P GG PG+ G GGY G GG
Sbjct: 489 YGGGPGGDAGPGGGGPGGGAGPG--GGEPGSGAGPGSGGYGGGPGG 358
Score = 39.3 bits (90), Expect = 5e-04
Identities = 25/50 (50%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = -1
Query: 52 GSYGGGY---PGRGGGGNYGGGYPRNRGGYPGNRGGNY--GGGYPGNRGG 96
GSYGGG G GGGG G P GGY G GG+ GGG PG+ G
Sbjct: 651 GSYGGGPGGDAGPGGGGPGGSAGP-GSGGYGGGPGGDTGPGGGEPGSGAG 505
Score = 38.9 bits (89), Expect = 7e-04
Identities = 23/47 (48%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Frame = -1
Query: 55 GGGYPGRG---GGGNYGGGYPRNRGGYPGNRGGNYG--GGYPGNRGG 96
GGG PG G GGG G G GGY G GG G GG PG G
Sbjct: 456 GGGGPGGGAGPGGGEPGSGAGPGSGGYGGGPGGGVGPGGGGPGGGAG 316
Score = 38.5 bits (88), Expect = 0.001
Identities = 22/47 (46%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -1
Query: 52 GSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNY--GGGYPGNRGG 96
G GGG G G GG GGG G Y G GG+ GGG PG G
Sbjct: 723 GPGGGGPVGGGYGGGPGGGAGSGGGSYGGGPGGDAGPGGGGPGGSAG 583
Score = 38.5 bits (88), Expect = 0.001
Identities = 24/52 (46%), Positives = 26/52 (49%), Gaps = 1/52 (1%)
Frame = -1
Query: 52 GSYGGGYPGR-GGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGGNYCRYG 102
G GGGY G GGG GGG + GG PG G GGG G+ G YG
Sbjct: 708 GPVGGGYGGGPGGGAGSGGG---SYGGGPGGDAGPGGGGPGGSAGPGSGGYG 562
Score = 38.1 bits (87), Expect = 0.001
Identities = 21/42 (50%), Positives = 23/42 (54%)
Frame = -1
Query: 55 GGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGG 96
GGG PG G G + GG + GG PG GG G GY G GG
Sbjct: 312 GGGGPGSGAGPSGGGPGGGSYGGEPGG-GGPGGDGYGGGPGG 190
Score = 37.7 bits (86), Expect = 0.002
Identities = 22/47 (46%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -1
Query: 52 GSYGGGYPGRGG--GGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGG 96
G YGGG G G GG G G GGY G GG+ G G G GG
Sbjct: 573 GGYGGGPGGDTGPGGGEPGSGAGPGSGGYGGGPGGDAGPGGGGPGGG 433
Score = 37.0 bits (84), Expect = 0.003
Identities = 22/47 (46%), Positives = 24/47 (50%), Gaps = 5/47 (10%)
Frame = -1
Query: 55 GGGYPGRGGG---GNYGGGYPRNRGGYPGNRGGNYG--GGYPGNRGG 96
GGG PG G G G YGGG + G G GG G GG PG+ G
Sbjct: 534 GGGEPGSGAGPGSGGYGGGPGGDAGPGGGGPGGGAGPGGGEPGSGAG 394
Score = 35.8 bits (81), Expect = 0.006
Identities = 29/70 (41%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Frame = -1
Query: 55 GGGYPGRGGG---GNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGGNYCRYGCCGDRYYGS 111
GGG PG G G G YGGG GG G GG GGG GG G G G
Sbjct: 423 GGGEPGSGAGPGSGGYGGG----PGGGVGPGGGGPGGGAGRGGGGPGSGAGPSGGGPGGG 256
Query: 112 CRKCCSYAGE 121
SY GE
Sbjct: 255 -----SYGGE 241
Score = 35.0 bits (79), Expect = 0.010
Identities = 21/46 (45%), Positives = 23/46 (49%)
Frame = -1
Query: 52 GSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGGN 97
GS G G G GGG GG GG PG+ G GGY G GG+
Sbjct: 594 GSAGPGSGGYGGG---PGGDTGPGGGEPGSGAGPGSGGYGGGPGGD 466
Score = 31.2 bits (69), Expect = 0.15
Identities = 21/49 (42%), Positives = 21/49 (42%)
Frame = -1
Query: 54 YGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGGNYCRYG 102
YGGG GGG GGG P GG YGGG G G YG
Sbjct: 750 YGGG---PGGGVGPGGGGPV---------GGGYGGGPGGGAGSGGGSYG 640
Score = 30.0 bits (66), Expect = 0.33
Identities = 23/55 (41%), Positives = 27/55 (48%), Gaps = 11/55 (20%)
Frame = -1
Query: 52 GSYGG----------GYPG-RGGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRG 95
GSYGG GY G GGG GG P++ GG+ GG YGG P + G
Sbjct: 258 GSYGGEPGGGGPGGDGYGGGPGGGAGPDGGGPKD-GGF---GGGPYGGYGPRSHG 106
>TC214257 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 protein
precursor, partial (7%)
Length = 607
Score = 49.3 bits (116), Expect = 5e-07
Identities = 28/57 (49%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Frame = +2
Query: 55 GGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGG-----GYPGNRGGNYCRYGCCGD 106
GGGY GGGG YGGG GG G GG YGG GY G+ G Y R G D
Sbjct: 50 GGGYNRNGGGGGYGGGGGYGGGGGHGG-GGGYGGGGRDRGYGGDGGSRYSRGGGASD 217
Score = 46.6 bits (109), Expect = 3e-06
Identities = 28/56 (50%), Positives = 28/56 (50%)
Frame = +2
Query: 55 GGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGGNYCRYGCCGDRYYG 110
GGGY G G GGGY RN GG GG YGGG GG Y G DR YG
Sbjct: 11 GGGYGGGGRREGGGGGYNRNGGGGGYGGGGGYGGGGGHGGGGGYGGGG--RDRGYG 172
Score = 39.3 bits (90), Expect = 5e-04
Identities = 23/47 (48%), Positives = 28/47 (58%)
Frame = +2
Query: 52 GSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGGNY 98
G YGGG GGGG YGGG R+R GY G+ G Y G + GG++
Sbjct: 98 GGYGGGGG-HGGGGGYGGG-GRDR-GYGGDGGSRYSRGGGASDGGSW 229
Score = 37.4 bits (85), Expect = 0.002
Identities = 26/59 (44%), Positives = 28/59 (47%)
Frame = +2
Query: 63 GGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGGNYCRYGCCGDRYYGSCRKCCSYAGE 121
GGG YGGG R GG NR G GGGY G GG G G YG + Y G+
Sbjct: 8 GGGGYGGGGRREGGGGGYNRNGG-GGGY-GGGGGYGGGGGHGGGGGYGGGGRDRGYGGD 178
Score = 30.0 bits (66), Expect = 0.33
Identities = 15/34 (44%), Positives = 16/34 (46%)
Frame = +2
Query: 52 GSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGN 85
G YGGG RG GG+ G Y R G G N
Sbjct: 134 GGYGGGGRDRGYGGDGGSRYSRGGGASDGGSWRN 235
Score = 25.8 bits (55), Expect = 6.2
Identities = 11/24 (45%), Positives = 13/24 (53%)
Frame = +2
Query: 48 DAKYGSYGGGYPGRGGGGNYGGGY 71
D YG GG RGGG + GG +
Sbjct: 158 DRGYGGDGGSRYSRGGGASDGGSW 229
>TC214360 similar to UP|Q9MBF3 (Q9MBF3) Glycine-rich RNA-binding protein,
partial (44%)
Length = 630
Score = 48.9 bits (115), Expect = 7e-07
Identities = 34/58 (58%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = +2
Query: 55 GGGYPGRGGGGNYGGGYPRNRGGYPGN-RGGNYGGGYPGNRGGNYCRYGCCG-DRYYG 110
GGGY RGGGG YGGG R GGY N GG YGGG G GG YG G DR YG
Sbjct: 5 GGGY-SRGGGG-YGGGGGRREGGYNRNGGGGGYGGGGGGYGGGG--GYGGGGRDRGYG 166
Score = 47.8 bits (112), Expect = 2e-06
Identities = 25/47 (53%), Positives = 30/47 (63%)
Frame = +2
Query: 52 GSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGGNY 98
G YGGG G GGGG YGGG R+R GY G+ G Y G G+ GG++
Sbjct: 89 GGYGGGGGGYGGGGGYGGG-GRDR-GYGGDGGSRYSRGGGGSDGGSW 223
Score = 45.1 bits (105), Expect = 1e-05
Identities = 29/60 (48%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +2
Query: 51 YGSYGGGYPGRGGGGNYGGGYPRNRGGYP-GNRGGNYGGGYPGNRGGNYCRYGCCGDRYY 109
Y GGGY G GGG GGY RN GG G GG YGGG GG YG G Y
Sbjct: 14 YSRGGGGYGG--GGGRREGGYNRNGGGGGYGGGGGGYGGGGGYGGGGRDRGYGGDGGSRY 187
Score = 42.0 bits (97), Expect = 8e-05
Identities = 28/66 (42%), Positives = 29/66 (43%), Gaps = 15/66 (22%)
Frame = +2
Query: 52 GSYGGGYPGRGGGGNY----------GGGYPRNRGGYPGNRGGNYGG-----GYPGNRGG 96
G Y G G GGGG GGGY GGY G GG YGG GY G+ G
Sbjct: 8 GGYSRGGGGYGGGGGRREGGYNRNGGGGGYGGGGGGYGG--GGGYGGGGRDRGYGGDGGS 181
Query: 97 NYCRYG 102
Y R G
Sbjct: 182 RYSRGG 199
Score = 32.3 bits (72), Expect = 0.067
Identities = 16/34 (47%), Positives = 17/34 (49%)
Frame = +2
Query: 52 GSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGN 85
G YGGG RG GG+ G Y R GG G N
Sbjct: 128 GGYGGGGRDRGYGGDGGSRYSRGGGGSDGGSWRN 229
Score = 28.1 bits (61), Expect = 1.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 48 DAKYGSYGGGYPGRGGGGNYGGGY 71
D YG GG RGGGG+ GG +
Sbjct: 152 DRGYGGDGGSRYSRGGGGSDGGSW 223
>BU763328 similar to SP|P10496|GRP2_ Glycine-rich cell wall structural
protein 1.8 precursor (GRP 1.8). [Kidney bean French
bean], partial (11%)
Length = 169
Score = 48.5 bits (114), Expect = 9e-07
Identities = 25/47 (53%), Positives = 27/47 (57%)
Frame = -3
Query: 52 GSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGGGYPGNRGGNY 98
G++GGGY G G GG GGGY G G GG YGGG G GG Y
Sbjct: 152 GAHGGGYGG-GQGGGAGGGY-----GAGGEHGGGYGGGEGGGAGGGY 30
Score = 45.4 bits (106), Expect = 8e-06
Identities = 25/47 (53%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -3
Query: 52 GSYGGGYPGRGGGGNYGGGYPRNRGGYPGNRGGNYGGGY--PGNRGG 96
G YGGG G G GG YG G + GGY G GG GGGY G GG
Sbjct: 140 GGYGGGQGG-GAGGGYGAG-GEHGGGYGGGEGGGAGGGYGASGEHGG 6
Score = 30.8 bits (68), Expect = 0.19
Identities = 16/34 (47%), Positives = 16/34 (47%)
Frame = -3
Query: 77 GYPGNRGGNYGGGYPGNRGGNYCRYGCCGDRYYG 110
G G GG YGGG G GG Y G G Y G
Sbjct: 161 GDGGAHGGGYGGGQGGGAGGGYGAGGEHGGGYGG 60
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.313 0.139 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,179,255
Number of Sequences: 63676
Number of extensions: 115268
Number of successful extensions: 4643
Number of sequences better than 10.0: 560
Number of HSP's better than 10.0 without gapping: 1679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2920
length of query: 133
length of database: 12,639,632
effective HSP length: 87
effective length of query: 46
effective length of database: 7,099,820
effective search space: 326591720
effective search space used: 326591720
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)
Medicago: description of AC138451.12