BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138133.3 - phase: 0 /pseudo
(430 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AI495080 93 3e-19
CA820303 77 1e-14
BQ576456 64 1e-10
CO979307 60 2e-09
TC211858 57 2e-08
TC234144 40 0.002
BG881451 weakly similar to PIR|D96521|D96 protein F21D18.16 [imp... 39 0.006
BF071225 weakly similar to PIR|D96521|D96 protein F21D18.16 [imp... 37 0.013
TC220808 weakly similar to UP|Q9SK32 (Q9SK32) Expressed protein,... 33 0.32
BI470376 weakly similar to GP|14090338|dbj P0638D12.5 {Oryza sat... 30 1.6
TC232239 29 4.7
TC216067 weakly similar to UP|RH2A_ARATH (Q9ZT50) RHA2a protein ... 28 6.1
>AI495080
Length = 407
Score = 92.8 bits (229), Expect = 3e-19
Identities = 51/122 (41%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Frame = +2
Query: 165 RALGGSVTLLTAWFLAHFPGFFSVDLNTDYLENYPVAARWKHQKGHGEGI---TYRSLLD 221
R L G +TLL W HFP + DY E P A RW K + I +YR L+
Sbjct: 2 RQLSGYITLLQCWIYEHFPSVAESTAD*DYDEASPRACRWIATKKTVKSIRTPSYRERLN 181
Query: 222 RIQLDDVCWRPYEKHREIQDFEEVFWYSGWIMCGVRRVYRHLPERVLRQYGYVQTIPRHP 281
R+++ DVCW Y +HRE+QDF YSG + G+ VY + PE+V+RQ+GY IP P
Sbjct: 182 RLRISDVCWILYGEHREVQDFHVRSCYSGLLHWGLVAVY-YRPEKVVRQFGYTPAIPAPP 358
Query: 282 TD 283
D
Sbjct: 359 VD 364
>CA820303
Length = 421
Score = 77.0 bits (188), Expect = 1e-14
Identities = 50/139 (35%), Positives = 71/139 (50%), Gaps = 6/139 (4%)
Frame = -1
Query: 215 TYRSLLDRIQLDDVCWRPYEKHREIQDFEEVFWYSGWIMCGVRRVYRHLPERVLRQYGYV 274
+YR LDR+++ DVCW PY +HRE+QDF YSG + G VY + ERV+RQ+GY
Sbjct: 400 SYRERLDRLRIPDVCWIPYGEHREVQDFHVRSCYSGLLCWGPVVVY-YRSERVVRQFGYT 224
Query: 275 QTIPRHPTDVRDLPPPSIVQMFVDFGTHTLKADARGEQAGEDTWRVADGYVLWYARVSHP 334
QTIP D + I ++ + H + A G + Y+ W+ R SHP
Sbjct: 223 QTIPASTVD-SWVSYDDIHDRWMHYEDHIVPAGEVCVVPG----ACSSDYIDWFFRTSHP 59
Query: 335 QILP-----PIPR-DLPRP 347
+ P P+P P+P
Sbjct: 58 FMTPGHAVDPLPHGHAPQP 2
>BQ576456
Length = 424
Score = 63.9 bits (154), Expect = 1e-10
Identities = 43/126 (34%), Positives = 60/126 (47%)
Frame = +1
Query: 4 GEMTVTLDDVACLTHLPIEGRMLAHGKKMPRHEGAALLMTYLGVSQNEAEKICNQEYGGY 63
GE+T+TLDD+ACL HLPI G L + + E LLM L VS+ EA + + Y
Sbjct: 31 GELTITLDDMACLLHLPITG-ALHRFEPLGVDEAVLLLMELLEVSREEARAKIVRAHRAY 207
Query: 64 ISYPRLRDFYTSYLGRANVLAGTEDPEELEELARVRTYCVRCYLLYLVGCLLFGDRSNKR 123
+ LR+ Y S AR VR YL +LV C LF ++S
Sbjct: 208 VRLSWLREVYQSRC-----------------QARCWIVAVRAYLFHLVDCTLFANKSATH 336
Query: 124 IELIYL 129
+ +++L
Sbjct: 337 VHVVHL 354
>CO979307
Length = 553
Score = 60.1 bits (144), Expect = 2e-09
Identities = 45/172 (26%), Positives = 81/172 (46%), Gaps = 2/172 (1%)
Frame = -3
Query: 109 YLVGCLLFGDRSNKRIELIYLTTMADGYAGMRNYF*GAMTLAYLYGELADACRPGHRALG 168
+L+ ++F D+S + + YL +++ *G L YLY L+ ++ G
Sbjct: 551 HLISSMIFADKSLAHVHVAYL*YLSN-LTACHK*V*GVAALVYLYDHLSYVSLDDNKQCG 375
Query: 169 GSVTLLTAWFLAHFP--GFFSVDLNTDYLENYPVAARWKHQKGHGEGITYRSLLDRIQLD 226
+TLL A H P G+ + + DY + P+ RW G + + ++ I ++
Sbjct: 374 DYMTLLMA*VFEHLPSVGYSNPE---DYSDGDPLNTRWNPLGGTRHALLVKERMNNIHMN 204
Query: 227 DVCWRPYEKHREIQDFEEVFWYSGWIMCGVRRVYRHLPERVLRQYGYVQTIP 278
PYE ++ ++ F E G+ C + + +L +RV RQ+ +VQTIP
Sbjct: 203 VFI*CPYE*NKLVRPFVEQTL*FGYFKCRI-DMRSYLLKRVRRQFCHVQTIP 51
>TC211858
Length = 524
Score = 56.6 bits (135), Expect = 2e-08
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Frame = -3
Query: 170 SVTLLTAWFLAHFPGFFSVDLNTDYLENYPVAARWKHQKGHGEGIT---YRSLLDRIQLD 226
++ L W HFP ++ Y E P A+RW K H +GIT YR+ D + +
Sbjct: 252 NLIFL*CWIYEHFPSVHQCVIDDTY*ETSPRASRWLTSKAHMKGITGAPYRARCDALTVI 73
Query: 227 DVCWRPYEKHREIQDFE 243
DV W PY +HR ++ FE
Sbjct: 72 DVSWLPYTEHRGVRAFE 22
>TC234144
Length = 468
Score = 40.0 bits (92), Expect = 0.002
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 217 RSLLDRIQLDDVCWRPYEKHREIQDFEEVFWYSGWIMCG 255
R LD + D+ W PY HRE + F ++ +SG+I CG
Sbjct: 6 RPALDML*TKDILWMPYTVHREHRPFHDISLFSGYIRCG 122
>BG881451 weakly similar to PIR|D96521|D96 protein F21D18.16 [imported] -
Arabidopsis thaliana, partial (1%)
Length = 421
Score = 38.5 bits (88), Expect = 0.006
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Frame = +3
Query: 214 ITYRSLLDRIQLDDVCWRPYEKHREIQDFEEV-----FWYSGWIMCGVRRVYRHLPERVL 268
+ YR LD ++ DV W PY + E + S ++ + RHLP R L
Sbjct: 6 VFYRKSLDSLKPCDVEWLPYRNMDSMVIPEYIKSTLILGRSKTMLICFDKAERHLPNRCL 185
Query: 269 RQYGYVQTIP 278
RQYG +Q+IP
Sbjct: 186 RQYGMLQSIP 215
>BF071225 weakly similar to PIR|D96521|D96 protein F21D18.16 [imported] -
Arabidopsis thaliana, partial (4%)
Length = 359
Score = 37.4 bits (85), Expect = 0.013
Identities = 25/84 (29%), Positives = 39/84 (45%), Gaps = 5/84 (5%)
Frame = +2
Query: 209 GHGEGITYRSLLDRIQLDDVCWRPYEKH-----REIQDFEEVFWYSGWIMCGVRRVYRHL 263
G+ + +R LD ++ + W PY +I V W++ + V H
Sbjct: 29 GNDDLRVFRRKLDLMKRHEFVWEPYTPTVMAALPQICVVGSVVWFAVVPLICFHVVEWHQ 208
Query: 264 PERVLRQYGYVQTIPRHPTDVRDL 287
P+RVLRQYG Q IP P+ ++L
Sbjct: 209 PDRVLRQYGLQQPIPGCPSQPQNL 280
>TC220808 weakly similar to UP|Q9SK32 (Q9SK32) Expressed protein, partial
(9%)
Length = 869
Score = 32.7 bits (73), Expect = 0.32
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Frame = +1
Query: 261 RHLPERVLRQYGYVQTIPRHPTDVRDLPPPSIVQMFVDFGTHTL-KADARGEQAGEDTWR 319
RHLP+R LRQ+ QTIP+ DV S + VD G + K D ++ E
Sbjct: 58 RHLPDRCLRQFAMHQTIPK---DVERWERKSRI---VDHGVDLMGKMDLALKEWSERWVH 219
Query: 320 VADG--------YVLWYARVSHPQI 336
V +G Y+ WY +++ I
Sbjct: 220 VVEGGDIVDEGEYMQWYQKITRKYI 294
>BI470376 weakly similar to GP|14090338|dbj P0638D12.5 {Oryza sativa
(japonica cultivar-group)}, partial (5%)
Length = 429
Score = 30.4 bits (67), Expect = 1.6
Identities = 18/49 (36%), Positives = 26/49 (52%)
Frame = -1
Query: 4 GEMTVTLDDVACLTHLPIEGRMLAHGKKMPRHEGAALLMTYLGVSQNEA 52
GE T+TL DV+ L +P++GR L + E L LGV ++A
Sbjct: 273 GEATITLQDVSVLLGIPVDGRPLIGNTNIDWFE---LFHELLGVMPDDA 136
>TC232239
Length = 747
Score = 28.9 bits (63), Expect = 4.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 203 RWKHQKGHGEGITYRSLLDRIQLDDVCWRPYEKH 236
+W Q G+GE +TY LD + + WR +E H
Sbjct: 458 KWGQQVGYGENLTYLLTLDYLN-SIMEWRRFEPH 556
>TC216067 weakly similar to UP|RH2A_ARATH (Q9ZT50) RHA2a protein (RING-H2
zinc finger protein), partial (37%)
Length = 733
Score = 28.5 bits (62), Expect = 6.1
Identities = 23/63 (36%), Positives = 29/63 (45%), Gaps = 7/63 (11%)
Frame = +2
Query: 370 YDMVSGVVAYADAQLGQEEVMSMTPQQWFEAMTHMREQIAPI-------LTRRRAQRPRR 422
+D SGV A D+ L Q + P F A + R Q P+ L RRR RPRR
Sbjct: 107 FDSASGVGA--DSHLRQ-----LPPLHAFRAFANPRSQPIPLRPDRRRALPRRRRIRPRR 265
Query: 423 RHH 425
+H
Sbjct: 266 TYH 274
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.324 0.140 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,183,932
Number of Sequences: 63676
Number of extensions: 315616
Number of successful extensions: 2252
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 2209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2244
length of query: 430
length of database: 12,639,632
effective HSP length: 100
effective length of query: 330
effective length of database: 6,272,032
effective search space: 2069770560
effective search space used: 2069770560
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Medicago: description of AC138133.3