BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138131.5 + phase: 0 /partial
(155 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC214153 homologue to UP|RS11_SOYBN (P17093) 40S ribosomal prote... 303 3e-83
TC214177 homologue to UP|RS11_SOYBN (P17093) 40S ribosomal prote... 303 3e-83
TC214060 UP|RS11_SOYBN (P17093) 40S ribosomal protein S11, complete 300 2e-82
TC214052 homologue to UP|RS11_SOYBN (P17093) 40S ribosomal prote... 293 3e-80
AW200918 similar to PIR|D35542|D35 ribosomal protein S11 - soybe... 202 5e-53
AW666193 similar to SP|P17093|RS11 40S ribosomal protein S11. [S... 167 1e-42
AW099264 weakly similar to SP|P17093|RS11 40S ribosomal protein ... 114 2e-26
TC214314 homologue to UP|CHS1_SOYBN (P24826) Chalcone synthase 1... 94 3e-20
TC214298 homologue to UP|Q7XA96 (Q7XA96) Photosystem I psaH prot... 52 9e-08
CD418408 PIR|D35542|D35 ribosomal protein S11 - soybean (fragmen... 45 1e-05
TC224557 homologue to UP|RS24_ARATH (Q9SS17) 40S ribosomal prote... 32 0.094
TC233606 30 0.47
TC224558 similar to GB|AAA84030.1|336392|ATHCPRPS17 ribosomal pr... 29 1.0
BE803862 27 5.2
TC225428 similar to UP|Q8L7U1 (Q8L7U1) AT4g39970/T5J17_140, part... 27 5.2
TC224730 similar to UP|O24074 (O24074) DnaJ-like protein MsJ1, p... 27 5.2
TC225433 similar to UP|Q8L7U1 (Q8L7U1) AT4g39970/T5J17_140, part... 27 5.2
BM085713 27 5.2
TC231685 26 6.7
TC224811 similar to UP|Q8ZZP6 (Q8ZZP6) Conserved protein, partia... 26 6.7
>TC214153 homologue to UP|RS11_SOYBN (P17093) 40S ribosomal protein S11,
complete
Length = 843
Score = 303 bits (775), Expect = 3e-83
Identities = 144/155 (92%), Positives = 152/155 (97%)
Frame = +1
Query: 1 TEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFFKSVGLGFKTPREAIDGTYIDKKCPFTGN 60
TEKAFLKQPKVFLCSKK GKGKRPGKGGNRF+KS+GLGFKTPR+AI+GTYIDKKCPFTGN
Sbjct: 88 TEKAFLKQPKVFLCSKKGGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGN 267
Query: 61 VSIRGRILAGTCHSAKMNRTIVVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHV 120
VSIRGRILAGTCHSAKM RTI+VRRNYLHFIKKYQRYEKRHSNIP+H+SPCFRVKEGDHV
Sbjct: 268 VSIRGRILAGTCHSAKMTRTIIVRRNYLHFIKKYQRYEKRHSNIPSHISPCFRVKEGDHV 447
Query: 121 IIGQCRPLSKTVRFNVLKVIPAGSSSGAGKKAFTG 155
IIGQCRP+SKTVRFNVLKVIPAGSSSGA KKAFTG
Sbjct: 448 IIGQCRPISKTVRFNVLKVIPAGSSSGA-KKAFTG 549
>TC214177 homologue to UP|RS11_SOYBN (P17093) 40S ribosomal protein S11,
complete
Length = 899
Score = 303 bits (775), Expect = 3e-83
Identities = 145/155 (93%), Positives = 151/155 (96%)
Frame = +3
Query: 1 TEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFFKSVGLGFKTPREAIDGTYIDKKCPFTGN 60
TEKAFLKQPKVFLCSKK GKGKRPGKGGNRF+KS+GLGFKTPR+AI+GTYIDKKCPFTGN
Sbjct: 78 TEKAFLKQPKVFLCSKKGGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGN 257
Query: 61 VSIRGRILAGTCHSAKMNRTIVVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHV 120
VSIRGRILAGTCHSAKM RTI+VRRNYLHFIKKYQRYEKRHSNIPAH SPCFRVKEGDHV
Sbjct: 258 VSIRGRILAGTCHSAKMTRTIIVRRNYLHFIKKYQRYEKRHSNIPAHTSPCFRVKEGDHV 437
Query: 121 IIGQCRPLSKTVRFNVLKVIPAGSSSGAGKKAFTG 155
IIGQCRP+SKTVRFNVLKVIPAGSSSGA KKAFTG
Sbjct: 438 IIGQCRPISKTVRFNVLKVIPAGSSSGA-KKAFTG 539
>TC214060 UP|RS11_SOYBN (P17093) 40S ribosomal protein S11, complete
Length = 825
Score = 300 bits (768), Expect = 2e-82
Identities = 145/155 (93%), Positives = 152/155 (97%)
Frame = +2
Query: 1 TEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFFKSVGLGFKTPREAIDGTYIDKKCPFTGN 60
TEKAFLKQPKVFL +KK+GKGKRPGKGGNRF+KS+GLGFKTPREAI+GTYIDKKCPFTGN
Sbjct: 98 TEKAFLKQPKVFLSTKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGN 277
Query: 61 VSIRGRILAGTCHSAKMNRTIVVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHV 120
VSIRGRILAGTCHSAKMNRTI+VRRNYLHFIKKYQRYEKRHSNIPAH+SP FRVKEGDHV
Sbjct: 278 VSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPAFRVKEGDHV 457
Query: 121 IIGQCRPLSKTVRFNVLKVIPAGSSSGAGKKAFTG 155
IIGQCRPLSKTVRFNVLKVIPAGSSSGA KKAFTG
Sbjct: 458 IIGQCRPLSKTVRFNVLKVIPAGSSSGA-KKAFTG 559
>TC214052 homologue to UP|RS11_SOYBN (P17093) 40S ribosomal protein S11,
complete
Length = 816
Score = 293 bits (749), Expect = 3e-80
Identities = 141/153 (92%), Positives = 148/153 (96%)
Frame = +3
Query: 3 KAFLKQPKVFLCSKKSGKGKRPGKGGNRFFKSVGLGFKTPREAIDGTYIDKKCPFTGNVS 62
+ FLKQPKVFL SKK+GKGKRPGKGGNRF+KS+GLGFKTPREAI+GTYIDKKCPFTGNVS
Sbjct: 111 RLFLKQPKVFLSSKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGNVS 290
Query: 63 IRGRILAGTCHSAKMNRTIVVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVII 122
IRGRILAGTCHSAKMNRTI+VRRNYLHFIKKYQRYEKRHSNIP H+SP FRVKEGDHVII
Sbjct: 291 IRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPTHISPAFRVKEGDHVII 470
Query: 123 GQCRPLSKTVRFNVLKVIPAGSSSGAGKKAFTG 155
GQCRPLSKTVRFNVLKVIPAGSSSGA KKAFTG
Sbjct: 471 GQCRPLSKTVRFNVLKVIPAGSSSGA-KKAFTG 566
>AW200918 similar to PIR|D35542|D35 ribosomal protein S11 - soybean
(fragment), partial (92%)
Length = 460
Score = 202 bits (514), Expect = 5e-53
Identities = 104/154 (67%), Positives = 118/154 (76%), Gaps = 1/154 (0%)
Frame = +2
Query: 3 KAFLKQPK-VFLCSKKSGKGKRPGKGGNRFFKSVGLGFKTPREAIDGTYIDKKCPFTGNV 61
+ FL+ K V+ K G+ + GKGGNRF+KS+GLGFKTPREAI+GTYIDKK PFTGNV
Sbjct: 2 EGFLETTKRVYQLDKNMGRERDLGKGGNRFWKSIGLGFKTPREAIEGTYIDKKSPFTGNV 181
Query: 62 SIRGRILAGTCHSAKMNRTIVVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVI 121
IL TCH+AKMNRTI+V RNYLHFIKKYQRY+ RH N PAH+SP FRVKEGDH I
Sbjct: 182 IHTRPILGWTCHTAKMNRTIIVSRNYLHFIKKYQRYQTRHFNTPAHISPAFRVKEGDHDI 361
Query: 122 IGQCRPLSKTVRFNVLKVIPAGSSSGAGKKAFTG 155
QC+PLSKT NVLK IPAGS S A +KA TG
Sbjct: 362 NAQCKPLSKTETLNVLKEIPAGSYSRA-QKASTG 460
>AW666193 similar to SP|P17093|RS11 40S ribosomal protein S11. [Soybean]
{Glycine max}, partial (72%)
Length = 411
Score = 167 bits (424), Expect = 1e-42
Identities = 79/112 (70%), Positives = 92/112 (81%)
Frame = +2
Query: 1 TEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFFKSVGLGFKTPREAIDGTYIDKKCPFTGN 60
T+KAFLKQPKVFL +KK+ KGK P KGGNRF KS+ L FKTP+EAI TYIDKK PFT N
Sbjct: 71 TKKAFLKQPKVFLXTKKTXKGKXPXKGGNRF*KSIELEFKTPKEAIKRTYIDKKYPFTDN 250
Query: 61 VSIRGRILAGTCHSAKMNRTIVVRRNYLHFIKKYQRYEKRHSNIPAHVSPCF 112
VSI IL T HS K+N+TI++R+NYLHFIKKYQ+YEK+HSNIP H+SP F
Sbjct: 251 VSIHNHILTKTYHSTKINKTIIIRKNYLHFIKKYQKYEKKHSNIPTHISPTF 406
>AW099264 weakly similar to SP|P17093|RS11 40S ribosomal protein S11.
[Soybean] {Glycine max}, partial (67%)
Length = 325
Score = 114 bits (284), Expect = 2e-26
Identities = 62/104 (59%), Positives = 68/104 (64%)
Frame = +2
Query: 1 TEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFFKSVGLGFKTPREAIDGTYIDKKCPFTGN 60
TEKAFLK L KK+ K KRP GGNR + S+ L KT E TYIDKK +TGN
Sbjct: 11 TEKAFLKHL*DALSLKKTDKAKRPAMGGNRSWISIELVIKTSSEVDHRTYIDKKSTYTGN 190
Query: 61 VSIRGRILAGTCHSAKMNRTIVVRRNYLHFIKKYQRYEKRHSNI 104
V IRG ILAGTC+SA NRTI RNYLH IKKY E +HSNI
Sbjct: 191 VYIRGSILAGTCYSAMKNRTITAMRNYLHAIKKYHEDETQHSNI 322
>TC214314 homologue to UP|CHS1_SOYBN (P24826) Chalcone synthase 1
(Naringenin-chalcone synthase 1) , partial (29%)
Length = 713
Score = 94.0 bits (232), Expect = 3e-20
Identities = 48/56 (85%), Positives = 50/56 (88%)
Frame = -3
Query: 100 RHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAGKKAFTG 155
R S + H+SP FRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGA KKAFTG
Sbjct: 291 RSS*LRKHISPAFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGA-KKAFTG 127
>TC214298 homologue to UP|Q7XA96 (Q7XA96) Photosystem I psaH protein, partial
(72%)
Length = 1186
Score = 52.4 bits (124), Expect = 9e-08
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = -1
Query: 96 RYEKRHSNIPAHVSPCFRVKEGDH 119
+YEKRHSNIPAH+SP FRVKEGDH
Sbjct: 73 KYEKRHSNIPAHISPAFRVKEGDH 2
>CD418408 PIR|D35542|D35 ribosomal protein S11 - soybean (fragment), partial
(17%)
Length = 327
Score = 45.4 bits (106), Expect = 1e-05
Identities = 24/26 (92%), Positives = 25/26 (95%)
Frame = -1
Query: 130 KTVRFNVLKVIPAGSSSGAGKKAFTG 155
+TVRFNVLKVIPAGSSSGA KKAFTG
Sbjct: 297 ETVRFNVLKVIPAGSSSGA-KKAFTG 223
>TC224557 homologue to UP|RS24_ARATH (Q9SS17) 40S ribosomal protein S24,
complete
Length = 1463
Score = 32.3 bits (72), Expect = 0.094
Identities = 26/84 (30%), Positives = 41/84 (47%)
Frame = -1
Query: 62 SIRGRILAGTCHSAKMNRTIVVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVI 121
+++GR++ T ++T+ V L KY+R ++ AH P + K GD V
Sbjct: 479 TMQGRVVCSTS-----DKTVAVEVVRLAPHPKYKRRVRKKKKYQAH-DPDNQFKVGDIVQ 318
Query: 122 IGQCRPLSKTVRFNVLKVIPAGSS 145
+ + RP+SKT F L V SS
Sbjct: 317 LQKTRPISKTKAFLALPVPKRPSS 246
>TC233606
Length = 871
Score = 30.0 bits (66), Expect = 0.47
Identities = 24/83 (28%), Positives = 37/83 (43%), Gaps = 2/83 (2%)
Frame = +1
Query: 53 KKCPFTGNVSIRGRILAGTCHSA-KMNRTIVVRRNYLHFIKKYQRYEKRHSNIPAHVSPC 111
++ P GNV + R L +SA KM T+ I QR+ + +S
Sbjct: 340 ERLPVGGNVRVDVRQLGEALNSASKMMETM---------ISNIQRFMPKAEETDVSISEL 492
Query: 112 FRVKEGDHVIIGQCRP-LSKTVR 133
RV G+ ++G+C LSKT +
Sbjct: 493 ARVAGGERALVGECGDLLSKTYK 561
>TC224558 similar to GB|AAA84030.1|336392|ATHCPRPS17 ribosomal protein S17
{Arabidopsis thaliana;} , partial (52%)
Length = 700
Score = 28.9 bits (63), Expect = 1.0
Identities = 25/85 (29%), Positives = 42/85 (49%)
Frame = +3
Query: 62 SIRGRILAGTCHSAKMNRTIVVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVI 121
+++G+++ T ++T+ V L KY+R ++ AH P + GD V
Sbjct: 207 TMQGKVVCST-----NDKTVAVEVVRLAPHPKYKRRVRKKKKYQAH-DPDNQFNVGDIVQ 368
Query: 122 IGQCRPLSKTVRFNVLKVIPAGSSS 146
+ + RP+SKT F L V P SS+
Sbjct: 369 LQKTRPISKTKAFLALPV-PKRSSN 440
>BE803862
Length = 568
Score = 26.6 bits (57), Expect = 5.2
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -3
Query: 14 CSKKSGKGKRPGKGGN 29
C + G+G RPG+GG+
Sbjct: 86 CRSREGRGSRPGRGGS 39
>TC225428 similar to UP|Q8L7U1 (Q8L7U1) AT4g39970/T5J17_140, partial (45%)
Length = 662
Score = 26.6 bits (57), Expect = 5.2
Identities = 17/46 (36%), Positives = 24/46 (51%), Gaps = 3/46 (6%)
Frame = +1
Query: 63 IRGRILA--GTCH-SAKMNRTIVVRRNYLHFIKKYQRYEKRHSNIP 105
IR R+L G C+ A N + V R YLH +++ HSN+P
Sbjct: 232 IRERLLGCRG*CYWIAGSNTSRDVMRGYLHTFHSRTGFQRSHSNLP 369
>TC224730 similar to UP|O24074 (O24074) DnaJ-like protein MsJ1, partial (96%)
Length = 1913
Score = 26.6 bits (57), Expect = 5.2
Identities = 15/34 (44%), Positives = 16/34 (46%)
Frame = +1
Query: 13 LCSKKSGKGKRPGKGGNRFFKSVGLGFKTPREAI 46
LC K GKG + G G R F G G K R I
Sbjct: 799 LCPKCKGKGSKSGTAG-RCFGCKGTGMKITRRQI 897
>TC225433 similar to UP|Q8L7U1 (Q8L7U1) AT4g39970/T5J17_140, partial (84%)
Length = 1322
Score = 26.6 bits (57), Expect = 5.2
Identities = 17/46 (36%), Positives = 24/46 (51%), Gaps = 3/46 (6%)
Frame = +2
Query: 63 IRGRILA--GTCH-SAKMNRTIVVRRNYLHFIKKYQRYEKRHSNIP 105
IR R+L G C+ A N + V R YLH +++ HSN+P
Sbjct: 806 IRERLLGCRG*CYWIAGSNTSRDVMRGYLHTFHSRTGFQRSHSNLP 943
>BM085713
Length = 426
Score = 26.6 bits (57), Expect = 5.2
Identities = 11/37 (29%), Positives = 16/37 (42%)
Frame = -1
Query: 88 LHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQ 124
LHF ++ + H + P PC + DH GQ
Sbjct: 261 LHFSSNFETFSPSHPHHPQS*KPCTLSQRTDHNFYGQ 151
>TC231685
Length = 802
Score = 26.2 bits (56), Expect = 6.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 79 RTIVVRRNYLHFIKKYQRYEK 99
RTI RRN L I+ YQ++EK
Sbjct: 447 RTIYTRRNQLLQIRLYQQFEK 385
>TC224811 similar to UP|Q8ZZP6 (Q8ZZP6) Conserved protein, partial (5%)
Length = 702
Score = 26.2 bits (56), Expect = 6.7
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 136 VLKVIPAGSSSGAGKKAFTG 155
VL V P G GAG+ FTG
Sbjct: 521 VLAVTPGGDKGGAGRVTFTG 580
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.139 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,149,184
Number of Sequences: 63676
Number of extensions: 98260
Number of successful extensions: 521
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of query: 155
length of database: 12,639,632
effective HSP length: 89
effective length of query: 66
effective length of database: 6,972,468
effective search space: 460182888
effective search space used: 460182888
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Medicago: description of AC138131.5