BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138087.2 + phase: 0 /pseudo
(296 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC210935 similar to UP|Q9LH54 (Q9LH54) Emb|CAB88266.1, partial (... 216 6e-61
TC229744 similar to UP|Q6H5H5 (Q6H5H5) Emsy N terminus domain-co... 156 9e-40
TC208695 weakly similar to UP|Q9FG29 (Q9FG29) Emb|CAB88266.1 (AT... 53 2e-20
BF595328 83 2e-16
BE609895 46 2e-05
AW102468 39 0.003
TC217220 weakly similar to UP|SMN_MOUSE (P97801) Survival motor ... 35 0.040
TC208063 similar to UP|Q9SJQ8 (Q9SJQ8) Expressed protein, partia... 35 0.053
TC204807 weakly similar to UP|HQGT_RAUSE (Q9AR73) Hydroquinone g... 33 0.15
TC231506 similar to UP|PTI6_LYCES (O04682) Pathogenesis-related ... 32 0.26
TC228724 similar to UP|Q9FML2 (Q9FML2) Histone deacetylase, part... 32 0.34
TC226524 similar to UP|Q8VYJ5 (Q8VYJ5) At1g68530/T26J14_10, part... 31 0.76
TC221539 weakly similar to UP|P93837 (P93837) Amp-binding protei... 30 1.00
TC211887 similar to UP|Q9STY3 (Q9STY3) Pectinesterase-like prote... 30 1.3
TC226891 similar to GB|AAM61419.1|21537078|AY084855 putaive DNA-... 30 1.7
BE822210 30 1.7
TC206443 similar to GB|AAR04332.2|37813067|AY423375 eukaryotic t... 30 1.7
TC205610 weakly similar to UP|Q6K624 (Q6K624) BRI1-KD interactin... 29 2.2
TC228275 weakly similar to UP|Q9M3D0 (Q9M3D0) Lipase-like protei... 29 2.2
TC226841 weakly similar to UP|Q9SI74 (Q9SI74) F23N19.12, partial... 29 2.2
>TC210935 similar to UP|Q9LH54 (Q9LH54) Emb|CAB88266.1, partial (33%)
Length = 839
Score = 216 bits (551), Expect(2) = 6e-61
Identities = 114/155 (73%), Positives = 122/155 (78%), Gaps = 3/155 (1%)
Frame = +3
Query: 29 ESLITELGIELRVSDEEHRELLGRVNSD*IIHRTRDWRETGIYQPPGCTTSQPVHDILPS 88
E LITEL ELRVSD+EHRELL RVNSD IIHR R+WR+TG YQP +TSQ HDILPS
Sbjct: 297 EGLITELRKELRVSDDEHRELLTRVNSDEIIHRIREWRQTGCYQPARRSTSQTGHDILPS 476
Query: 89 PTVSASNKKPKTSHSVPPSLGQSLPGLSSVKPVQCASTGPTGARHFSNHNSS---SNLNA 145
PTVSAS KK KTSHS GQSLP LSSVK VQ S GPTG RHF+NHNSS SN +A
Sbjct: 477 PTVSASRKKQKTSHS-----GQSLPALSSVKSVQYTSAGPTGGRHFANHNSSALASNASA 641
Query: 146 PAEEAQFDPLIGKKVWTRWPEDSHFYEAVITDYNP 180
E A FDPLIGKKVWTRWPED+HFYEAV+TDYNP
Sbjct: 642 -TEAAAFDPLIGKKVWTRWPEDNHFYEAVVTDYNP 743
Score = 35.4 bits (80), Expect(2) = 6e-61
Identities = 14/17 (82%), Positives = 15/17 (87%)
Frame = +2
Query: 12 ILCCLVCF*SSVRCSYL 28
+LCCL CF SSVRCSYL
Sbjct: 239 LLCCLACFQSSVRCSYL 289
>TC229744 similar to UP|Q6H5H5 (Q6H5H5) Emsy N terminus domain-containing
protein-like, partial (40%)
Length = 1665
Score = 156 bits (395), Expect(2) = 9e-40
Identities = 111/309 (35%), Positives = 150/309 (47%), Gaps = 68/309 (22%)
Frame = +1
Query: 29 ESLITELGIELRVSDEEHRELLGRVNSD*IIHRTRDWRETGIYQPPGCTTSQPVHDILPS 88
ESLITEL ELR+S+EEHRELLGRVN+D +I R R+WR+ G +QP +T Q +HD +PS
Sbjct: 322 ESLITELRKELRLSNEEHRELLGRVNADDVIRRIREWRQAGGHQPGVLSTGQGLHDSIPS 501
Query: 89 PTVSASNKKPKTSHSVPPSL---------------------------------------G 109
PTVSAS KK K + SVPPS G
Sbjct: 502 PTVSASRKKQKITPSVPPSRSFGGPSPPFHPQTLTAPHQPSSAAKRGSAPGSKGKKHKPG 681
Query: 110 QSLPGLSSVKPVQCASTGPTGARHFSNHNSSSNLNAPAEEAQFDPLIGKKVWTRWPEDSH 169
Q LPG+SS+K Q S+GP G N + + AE A FD L+G++V T+WP+D++
Sbjct: 682 QILPGVSSMK--QYPSSGPGGRNQVPNR---AAMGEHAEGASFDSLVGRRVRTKWPDDNN 846
Query: 170 FYEAVITDYNPDE*HVHILQG*YSLLEVSLG*YNIT*GYTMGR*RSGHTT*RLTQRARPW 229
FYEAVIT+YNP + G +N+ Y MG S + T +
Sbjct: 847 FYEAVITNYNPAD-----------------GRHNLV--YDMG---SANETWEWVNLSEIS 960
Query: 230 S*EILWL-----------------------------GAGRGKGHPRFHSRKELMPPQDGI 260
+I W+ GAGRG+G + SRK+ + Q+GI
Sbjct: 961 PEDIQWVGEDPGINHRGGFGGPGHGMNRSVGRDGVPGAGRGRGAAKGQSRKDFLSSQNGI 1140
Query: 261 GNRVPNGIK 269
G + P+ I+
Sbjct: 1141GKKAPDDIQ 1167
Score = 24.6 bits (52), Expect(2) = 9e-40
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = +2
Query: 269 KWKGFSLQVIQILWSLRKQSRC*KLLNE 296
+W+ +S+Q+ I LRKQ + *+++++
Sbjct: 1196 RWRRYSVQITLIPLKLRKQRKY*RIMSK 1279
>TC208695 weakly similar to UP|Q9FG29 (Q9FG29) Emb|CAB88266.1
(AT5g06780/MPH15_14), partial (42%)
Length = 811
Score = 53.1 bits (126), Expect(3) = 2e-20
Identities = 22/34 (64%), Positives = 29/34 (84%)
Frame = +3
Query: 236 LGAGRGKGHPRFHSRKELMPPQDGIGNRVPNGIK 269
LGAGRG+GHPRF +R+E +PPQ+GIG RV + I+
Sbjct: 204 LGAGRGRGHPRFQARQEFLPPQNGIGRRVLDDIE 305
Score = 43.1 bits (100), Expect(3) = 2e-20
Identities = 22/33 (66%), Positives = 25/33 (75%)
Frame = +2
Query: 203 NIT*GYTMGR*RSGHTT*RLTQRARPWS*EILW 235
++T*GY MGR*RS H+ *R T AR W *EILW
Sbjct: 89 DLT*GYKMGR*RSWHSP*RWTWWARSWR*EILW 187
Score = 39.7 bits (91), Expect(3) = 2e-20
Identities = 17/26 (65%), Positives = 23/26 (88%)
Frame = +1
Query: 271 KGFSLQVIQILWSLRKQSRC*KLLNE 296
KGF LQV+QI WSLR+QS+C*K +++
Sbjct: 340 KGFLLQVLQIQWSLRRQSKC*KSMSK 417
>BF595328
Length = 422
Score = 82.8 bits (203), Expect = 2e-16
Identities = 43/60 (71%), Positives = 45/60 (74%), Gaps = 3/60 (5%)
Frame = +2
Query: 109 GQSLPGLSSVKPVQCASTGPTGARHFSNHNSS---SNLNAPAEEAQFDPLIGKKVWTRWP 165
GQSLP LSSVK VQ S GPTG RHF+NHNSS SN +A E A FDPLI KKVWTRWP
Sbjct: 245 GQSLPALSSVKSVQYTSAGPTGGRHFANHNSSALASNASA-TEAAAFDPLIXKKVWTRWP 421
Score = 35.8 bits (81), Expect = 0.024
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = +2
Query: 89 PTVSASNKKPKTSHSVPP 106
PTVSAS KK KTSHSVPP
Sbjct: 2 PTVSASRKKQKTSHSVPP 55
>BE609895
Length = 406
Score = 45.8 bits (107), Expect = 2e-05
Identities = 48/133 (36%), Positives = 56/133 (42%), Gaps = 37/133 (27%)
Frame = -1
Query: 29 ESLITELGIELRVSDEEHRELL----------GRVNSD*IIH------------------ 60
ESLITEL ELRVSDEEHR + +V II
Sbjct: 406 ESLITELRKELRVSDEEHRTSIKSQC**HHPQDKVILYFIIF**AVSV*H*ANSGFFCIL 227
Query: 61 -------RTRDWRETGIYQPPGCTTSQPVHDILPSPTVSASNKKPKTSHSVPP-SLGQSL 112
R+WR+ Q T+Q VHD S TV AS KK KTS SV SLG
Sbjct: 226 KWGVSNCAVREWRKGNGLQSGTVHTAQQVHDHNTSSTVLASRKKKKTSQSVASLSLGAPS 47
Query: 113 PGL-SSVKPVQCA 124
P + S++P A
Sbjct: 46 PAVHPSMQPSSSA 8
>AW102468
Length = 217
Score = 38.9 bits (89), Expect = 0.003
Identities = 27/68 (39%), Positives = 37/68 (53%), Gaps = 4/68 (5%)
Frame = +2
Query: 1 MEVQSHQLGR----CILCCLVCF*SSVRCSYLESLITELGIELRVSDEEHRELLGRVNSD 56
ME Q HQL + IL ++ C +S+IT L ELR+S + HRELL VN+D
Sbjct: 17 METQIHQLEKEAYTSILQTFKAHADAISCEN-DSVITVLISELRLSHDVHRELLRHVNAD 193
Query: 57 *IIHRTRD 64
+I R+
Sbjct: 194DVIQNIRE 217
>TC217220 weakly similar to UP|SMN_MOUSE (P97801) Survival motor neuron
protein, partial (7%)
Length = 1332
Score = 35.0 bits (79), Expect = 0.040
Identities = 19/62 (30%), Positives = 31/62 (49%)
Frame = +3
Query: 120 PVQCASTGPTGARHFSNHNSSSNLNAPAEEAQFDPLIGKKVWTRWPEDSHFYEAVITDYN 179
P A+ PT S HN + L++ ++ + P +G KV W ED +Y+A + Y
Sbjct: 261 PPNAAAASPT----LSIHNDNQVLDSSSDHQEKLP-VGTKVQAVWSEDGEWYDATVEAYT 425
Query: 180 PD 181
P+
Sbjct: 426 PN 431
>TC208063 similar to UP|Q9SJQ8 (Q9SJQ8) Expressed protein, partial (20%)
Length = 1403
Score = 34.7 bits (78), Expect = 0.053
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = -1
Query: 51 GRVNSD*IIHRTRDWRETGIYQPPGCTTSQPVHDILPSPTVSASNKKP---KTSHSVPPS 107
G+++S TRD +PP T +I PSP +S S++KP KTS SV P+
Sbjct: 854 GKLSSCPRTRTTRDPSSPLPPRPPPRRTLSISREIFPSPRISPSSRKPRCRKTSRSVKPT 675
Query: 108 LGQSL--PGLSSV 118
L PGL ++
Sbjct: 674 RNSLLLRPGLITI 636
>TC204807 weakly similar to UP|HQGT_RAUSE (Q9AR73) Hydroquinone
glucosyltransferase (Arbutin synthase) , partial (79%)
Length = 1673
Score = 33.1 bits (74), Expect = 0.15
Identities = 27/92 (29%), Positives = 38/92 (40%)
Frame = +3
Query: 73 PPGCTTSQPVHDILPSPTVSASNKKPKTSHSVPPSLGQSLPGLSSVKPVQCASTGPTGAR 132
PP TS P P+P+ S N P + S+PP LP S C+ST P
Sbjct: 576 PPSS*TSSP-----PTPSTSPPNSMPPPTSSIPP-----LPPSS-----PCSSTSPPSTS 710
Query: 133 HFSNHNSSSNLNAPAEEAQFDPLIGKKVWTRW 164
S + +S + + A P + WTR+
Sbjct: 711 RSSASSETSQNRSASPVAFLFP--ARTCWTRF 800
>TC231506 similar to UP|PTI6_LYCES (O04682) Pathogenesis-related genes
transcriptional activator PTI6, partial (29%)
Length = 934
Score = 32.3 bits (72), Expect = 0.26
Identities = 18/70 (25%), Positives = 33/70 (46%)
Frame = +2
Query: 66 RETGIYQPPGCTTSQPVHDILPSPTVSASNKKPKTSHSVPPSLGQSLPGLSSVKPVQCAS 125
R T +PP CTT+ P P+P++++ + P+ + +P + P P+ +
Sbjct: 677 RSTRRRKPPPCTTTPP*SSRAPTPSLTSPSPPPEKRNMIPRRRRRLSPAKVFHLPLPFSL 856
Query: 126 TGPTGARHFS 135
T RHF+
Sbjct: 857 TLTETRRHFT 886
>TC228724 similar to UP|Q9FML2 (Q9FML2) Histone deacetylase, partial (82%)
Length = 1677
Score = 32.0 bits (71), Expect = 0.34
Identities = 26/90 (28%), Positives = 33/90 (35%)
Frame = +2
Query: 65 WRETGIYQPPGCTTSQPVHDILPSPTVSASNKKPKTSHSVPPSLGQSLPGLSSVKPVQCA 124
WR T P + P P SA++ TS S PP S P S + P
Sbjct: 206 WRTTSSSTTPSTAAWRSTAPSRPPPPTSAASTPTTTSTSSPP----SPPRPSPIPPSLVT 373
Query: 125 STGPTGARHFSNHNSSSNLNAPAEEAQFDP 154
S+ T AR + +SS P A P
Sbjct: 374 SSASTSARTAPSSTASSPSARPPPAAPSAP 463
>TC226524 similar to UP|Q8VYJ5 (Q8VYJ5) At1g68530/T26J14_10, partial (39%)
Length = 608
Score = 30.8 bits (68), Expect = 0.76
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Frame = +1
Query: 65 WRETGIYQPPGCTTSQPVHDILPSPTVSASNKKPKTSH----SVPPSLGQSLPGLSSVKP 120
W + PP ++S P P+P S S+ P +SH + P + PG SS+K
Sbjct: 190 WTLSKSSAPPSSSSSSPPSTSCPNPAPSTSSTTPASSHPSPAASPSQPSWNTPG-SSLKT 366
Query: 121 VQCASTGPTGARHFSN 136
AS+ G FSN
Sbjct: 367 TLRASSSKCG---FSN 405
>TC221539 weakly similar to UP|P93837 (P93837) Amp-binding protein, partial
(30%)
Length = 698
Score = 30.4 bits (67), Expect = 1.00
Identities = 17/43 (39%), Positives = 23/43 (52%)
Frame = +3
Query: 77 TTSQPVHDILPSPTVSASNKKPKTSHSVPPSLGQSLPGLSSVK 119
TTS P PSP+ SA+ +S + P + S P LSS+K
Sbjct: 357 TTSTPASTPAPSPSSSATRTPGWSSSTAPHATSSSKPYLSSLK 485
>TC211887 similar to UP|Q9STY3 (Q9STY3) Pectinesterase-like protein, partial
(27%)
Length = 614
Score = 30.0 bits (66), Expect = 1.3
Identities = 25/76 (32%), Positives = 36/76 (46%), Gaps = 13/76 (17%)
Frame = -1
Query: 99 KTSHSVPPSLGQS---LPGLSSVKPVQC----ASTGPTGARH------FSNHNSSSNLNA 145
KT S P S G++ +P LS ++ +QC + PT H F +HNS +L
Sbjct: 392 KTGPSYPVSGGRTGPKVPVLSIIESIQCKIRVSPWRPTPWAHQAIQERFHDHNSRVSLPR 213
Query: 146 PAEEAQFDPLIGKKVW 161
PA+E G +VW
Sbjct: 212 PAQEGVEFSNNGPEVW 165
>TC226891 similar to GB|AAM61419.1|21537078|AY084855 putaive DNA-binding
protein {Arabidopsis thaliana;} , partial (41%)
Length = 1187
Score = 29.6 bits (65), Expect = 1.7
Identities = 17/61 (27%), Positives = 22/61 (35%)
Frame = +3
Query: 73 PPGCTTSQPVHDILPSPTVSASNKKPKTSHSVPPSLGQSLPGLSSVKPVQCASTGPTGAR 132
PP P P+ + S+ P SH PP G+S L P +T P
Sbjct: 444 PPPSRPPSPTTPASPTARSALSSLPPPPSHLSPPPTGKSAATLPPHSPPNPPATAPRKGN 623
Query: 133 H 133
H
Sbjct: 624 H 626
>BE822210
Length = 619
Score = 29.6 bits (65), Expect = 1.7
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +3
Query: 61 RTRDWRE-TGIYQPPGCTTSQPVHDILPSPTVSASNKKP---KTSHSVPPS 107
RTR R+ + + PP T + PS +S S++KP KTS SV PS
Sbjct: 432 RTRTTRDPSALLAPPPRRT*SIYRENFPSAXISPSSRKPLCRKTSRSVKPS 584
>TC206443 similar to GB|AAR04332.2|37813067|AY423375 eukaryotic translation
initiation factor 4E {Pisum sativum;} , partial (41%)
Length = 461
Score = 29.6 bits (65), Expect = 1.7
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 6/116 (5%)
Frame = +2
Query: 45 EHRELLGRVNSD*IIHRTRDWRETGIYQPPGCTTSQPVHDILPSPTVSASNK------KP 98
EHR GR + + + W +++ P S+ + SPT + + K P
Sbjct: 5 EHRAEKGRKKAFVSVRES*QW----LWKMPKNQPSRRTKTLAGSPTTTTTTKISKRGRSP 172
Query: 99 KTSHSVPPSLGQSLPGLSSVKPVQCASTGPTGARHFSNHNSSSNLNAPAEEAQFDP 154
T + PP QSL SS P GP+G+ + + AP++ + P
Sbjct: 173 TTVTTAPPP-HQSLRPPSSATPTLSRIPGPSGSTTLPPSPNKPHGAAPSDPSTLSP 337
>TC205610 weakly similar to UP|Q6K624 (Q6K624) BRI1-KD interacting protein
135, partial (7%)
Length = 752
Score = 29.3 bits (64), Expect = 2.2
Identities = 15/42 (35%), Positives = 25/42 (58%)
Frame = +3
Query: 138 NSSSNLNAPAEEAQFDPLIGKKVWTRWPEDSHFYEAVITDYN 179
+SS N+ A+E + L+G +V WP+D FY+ VI ++
Sbjct: 33 HSSGKENSNAKEYGQN-LVGLRVKVWWPDDREFYKGVIDSFD 155
>TC228275 weakly similar to UP|Q9M3D0 (Q9M3D0) Lipase-like protein, partial
(25%)
Length = 1153
Score = 29.3 bits (64), Expect = 2.2
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = +3
Query: 66 RETGIYQPPGCT-TSQPVHDILPSPTVSASNKKPKTSHSVPPSLGQSLPGLSSVKPVQCA 124
R++ PPG T +S P +PTVS++ T PPS S +++
Sbjct: 216 RKSASTSPPGATPSSPPTSSATAAPTVSSATSATWTKSPPPPSPSSSTSAIATPTKTSRH 395
Query: 125 STGPTGARHFSNHNSSSNLN 144
S+ + + +SN N
Sbjct: 396 SSSASPWEDSPRSSCTSNRN 455
>TC226841 weakly similar to UP|Q9SI74 (Q9SI74) F23N19.12, partial (15%)
Length = 481
Score = 29.3 bits (64), Expect = 2.2
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +1
Query: 74 PGCTTSQPVHDILPSPTVSASNKKPKTSHSVPPSLGQSLPGLSSVKPVQCASTGPTGARH 133
P TT++P P+P S ++ +S S PSL S ++ K A+ P +
Sbjct: 256 PTSTTTKPSAITPPTPPPSTASPPSPSSSSATPSLTASRDAFAAAKASSLAAPPPPPSSP 435
Query: 134 FSNH 137
S+H
Sbjct: 436 SSSH 447
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.335 0.147 0.499
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,255,357
Number of Sequences: 63676
Number of extensions: 268493
Number of successful extensions: 2919
Number of sequences better than 10.0: 89
Number of HSP's better than 10.0 without gapping: 2780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2908
length of query: 296
length of database: 12,639,632
effective HSP length: 97
effective length of query: 199
effective length of database: 6,463,060
effective search space: 1286148940
effective search space used: 1286148940
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 58 (26.9 bits)
Medicago: description of AC138087.2