BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138063.5 + phase: 0 /pseudo
(840 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC208963 234 1e-61
TC211617 141 1e-33
BM525744 131 1e-30
TC218095 123 3e-28
TC210791 84 8e-26
TC218096 112 5e-25
TC224081 94 3e-19
BI786825 93 4e-19
BU545334 92 9e-19
BG839904 91 2e-18
AW507853 85 1e-16
AW761314 79 8e-15
TC218819 similar to UP|O03160 (O03160) NADH dehydrogenase subuni... 77 4e-14
TC234242 75 2e-13
BM108203 64 6e-13
BE057981 65 1e-10
AW200845 65 2e-10
BM892478 59 1e-08
AW569215 weakly similar to GP|4914326|gb| F14N23.12 {Arabidopsis... 49 1e-05
BI497763 37 2e-05
>TC208963
Length = 1163
Score = 234 bits (597), Expect = 1e-61
Identities = 140/392 (35%), Positives = 208/392 (52%), Gaps = 42/392 (10%)
Frame = +1
Query: 296 MPKVIVTDRDTGLMNAVANIFPKSTALVCEFHILKNVRARCILDCKVKDSKGKHVKSSDL 355
MP+VIVT D LM+AV +FP S+ L+C FHI +NV+A+C +K+ +
Sbjct: 19 MPQVIVTVGDIALMSAVQVVFPSSSNLLCRFHINQNVKAKCKSIVHLKEKQ--------- 171
Query: 356 VNTIMNAWEVIVSSPSEELYADAVLQFRKVCEQFPKFLKYVESTILEPLKKKIVKAWTN- 414
+M+AW+V+V+SP+E Y + F VC FP YV++T L P K+K V AWTN
Sbjct: 172 -ELMMDAWDVVVNSPNEGEYMQRLAFFENVCLDFPILGDYVKNTWLIPHKEKFVTAWTNQ 348
Query: 415 -----------------------------------------RVMHFGCTTTNGVESAHGT 433
RVMH G T TN VE+ H
Sbjct: 349 VMHLGNTATNRFAQTLYFE*FIRKNT*LIPHKEKFVTAWTNRVMHLGNTATNRVEATHWR 528
Query: 434 LKGYLEDSKGDLAKGWKAINAMLTVQFTEIQATFGRNSTVLEHKFKGNKMYKSLEYNVSR 493
LK L+DSK D+ W A+ M+T+Q TEI+A+F ++ V+EH+ Y L VSR
Sbjct: 529 LKTLLQDSKEDMCSYWDAMKNMITLQHTEIEASFEKSKNVVEHR-HNTPFYVKLVGFVSR 705
Query: 494 TAMNYIYKQASRVKDCGSDSKKCGCVIRWTHALPCTCLIYKKLNLGSCIRLDEINIHWKK 553
+A+++I ++ RVK G DS CGC++R TH LPC C + + + I L+ I+ HW+K
Sbjct: 706 SALSHITEEYDRVKTAGIDSSICGCIVRTTHGLPCACELARYSTMCHPIPLEAIHAHWRK 885
Query: 554 LCFEVDDDVEESNRHVSIQNELNAIQERFNKADYNMKLIIKEQMREMTFPHTTSLTPPIQ 613
L F D ++ +S+Q E++A+ +RF + DY K+I+ ++ EM FP T P +
Sbjct: 886 LKFS-DHGTNDNGSELSLQPEVDALYKRFQELDYAGKIILMAKLHEMAFPDTALKCLPPE 1062
Query: 614 KLKTKGAQKGAQKRKRSTLDDSSTTREPSFWE 645
++ TKGA +G + + D ST +PS+ E
Sbjct: 1063EVGTKGAPEGLRWK-----SDGSTKFDPSYLE 1143
>TC211617
Length = 534
Score = 141 bits (355), Expect = 1e-33
Identities = 76/174 (43%), Positives = 108/174 (61%), Gaps = 2/174 (1%)
Frame = -1
Query: 70 ERSGEYKGTKKS-KREGTGSRKCGCPFRLRGY-FSATKLWSLNIVSGLHNHKMEPKLEGH 127
ERSG+YK KK R T +RKCGCPF++RG + W++ ++ G+HNH++ L H
Sbjct: 528 ERSGKYKCRKKEFVRRDTCTRKCGCPFKIRGKPMHGGEGWTVKLICGIHNHELAKTLVEH 349
Query: 128 MLAGRLTAKESKIVGDMTRNLIKPKNILLDLKGRWKDNRTVAKQIYNARHRYKLSIRGSR 187
AGRLT E I+ DMT++ +KP+NI L LK ++ T KQIYNAR Y SIRG
Sbjct: 348 PYAGRLTDDEKNIIADMTKSNVKPRNIQLTLKEHNTNSCTTIKQIYNARSAYHSSIRGDD 169
Query: 188 *EMQELFQKFEENNYVFNYRTVSGSRTVQDLFFAHPESVKLFNTFPTVLVMDST 241
EMQ L + + + Y+ ++ + V+DLF+ HP++VKL NT V ++DST
Sbjct: 168 TEMQHLMRLLKRDQYI-HWHRLKDQDVVRDLFWCHPDAVKLCNTCHLVFLIDST 10
>BM525744
Length = 411
Score = 131 bits (329), Expect = 1e-30
Identities = 63/136 (46%), Positives = 96/136 (70%)
Frame = +3
Query: 140 IVGDMTRNLIKPKNILLDLKGRWKDNRTVAKQIYNARHRYKLSIRGSR*EMQELFQKFEE 199
+V DMT+ +++P+NILL LK +N T + IYNAR Y+ S +G R EMQ L + E
Sbjct: 6 LVIDMTKKMVEPRNILLTLKDH--NNDTTIRHIYNARQAYRSSQKGPRTEMQHLLKLLEH 179
Query: 200 NNYVFNYRTVSGSRTVQDLFFAHPESVKLFNTFPTVLVMDSTYKTNQYKMPLFEIVGLTS 259
+ YV R V S ++D+F+AHP+++KL +F TVL +D+TYK N+Y++PL EIVG+TS
Sbjct: 180 DQYVCWSRKVDDSDAIRDIFWAHPDAIKLLGSFHTVLFLDNTYKVNRYQLPLLEIVGVTS 359
Query: 260 TEMTYNVGFAFLTMEK 275
TE+T++V FA++ ++
Sbjct: 360 TELTFSVAFAYMESDE 407
>TC218095
Length = 925
Score = 123 bits (309), Expect = 3e-28
Identities = 70/157 (44%), Positives = 98/157 (61%), Gaps = 2/157 (1%)
Frame = +1
Query: 684 IPCIDQMPNVMKPYIEKIVNVDGDGYCGYRVVAENLGLGSDSYGLVPLALIKELTGKKND 743
+P +DQ P + P+IE I++V GD CGYR VA LG+G +S+ LV LI+EL +++
Sbjct: 94 LPMMDQFPVEIHPFIEDIIDVKGDSNCGYRAVAAQLGMGEESWALVRQDLIRELQQWQDN 273
Query: 744 YSGIFGGEDRLKFLIDSLYPPKEKTSIAPEEKWLTVPDMGHVIASLYNKVVVVLKYGNNF 803
Y+ +FG DR+ L SLY K+ A W+T+PDMG+VIAS YN V+V L
Sbjct: 274 YAKLFGSNDRVAELRKSLYVGKQ----ASVASWMTIPDMGYVIASRYNVVLVTLSLQE-- 435
Query: 804 SETCFPLRGRPPTNPSA-RIMCLGLIPN-HFVHVFLR 838
T FPLRGRPP + S+ R++ +G + HFV V L+
Sbjct: 436 CMTFFPLRGRPPLSQSSHRLISIGFVHKCHFVQVVLK 546
>TC210791
Length = 456
Score = 83.6 bits (205), Expect(2) = 8e-26
Identities = 40/96 (41%), Positives = 59/96 (60%)
Frame = +2
Query: 350 VKSSDLVNTIMNAWEVIVSSPSEELYADAVLQFRKVCEQFPKFLKYVESTILEPLKKKIV 409
V + + +M+AW+ +++SP+E Y + KVC FP F YV++T L P K+K V
Sbjct: 161 VHPKERYDLVMDAWDSVMNSPNEGEYMQRLTLLEKVCSDFPTFGDYVKNTWLIPHKEKFV 340
Query: 410 KAWTNRVMHFGCTTTNGVESAHGTLKGYLEDSKGDL 445
AW +RVMH G TT + E+AH L+ L+DS GD+
Sbjct: 341 MAWVDRVMHLGNTTIDRFETAHWRLENLLQDSGGDM 448
Score = 52.8 bits (125), Expect(2) = 8e-26
Identities = 24/45 (53%), Positives = 33/45 (73%)
Frame = +1
Query: 295 QMPKVIVTDRDTGLMNAVANIFPKSTALVCEFHILKNVRARCILD 339
+MP VI+T RD LM+AV +FP S+ L+C FHI KNV+A+ +D
Sbjct: 25 EMPPVIITVRDIALMDAVQVVFPSSSNLLCRFHISKNVKAKSQVD 159
>TC218096
Length = 806
Score = 112 bits (281), Expect = 5e-25
Identities = 65/145 (44%), Positives = 90/145 (61%), Gaps = 2/145 (1%)
Frame = +3
Query: 696 PYIEKIVNVDGDGYCGYRVVAENLGLGSDSYGLVPLALIKELTGKKNDYSGIFGGEDRLK 755
P+IE I++V G CGYR VA LG+G +S+ LV LI+EL +++Y+ +FG DR+
Sbjct: 63 PFIEDIIDVKGXSNCGYRAVAAQLGMGEESWALVRQDLIRELQQWQDNYAKLFGSNDRVA 242
Query: 756 FLIDSLYPPKEKTSIAPEEKWLTVPDMGHVIASLYNKVVVVLKYGNNFSETCFPLRGRPP 815
L SLY K+ A W+T+PDMG+VIAS YN V+V L T FPLRGRPP
Sbjct: 243 ELRQSLYVGKQ----ASVASWMTIPDMGYVIASRYNVVLVTLSLQE--CMTFFPLRGRPP 404
Query: 816 TNPSA-RIMCLGLIPN-HFVHVFLR 838
+ S+ R++ +G + HFV V L+
Sbjct: 405 LSQSSYRLISIGFVHKCHFVQVVLK 479
>TC224081
Length = 512
Score = 93.6 bits (231), Expect = 3e-19
Identities = 62/179 (34%), Positives = 91/179 (50%), Gaps = 2/179 (1%)
Frame = +1
Query: 540 SCIRLDEINIHWKKLCFEVDDDVEESNRHVSIQNELNAIQERFNKADYNMKLIIKEQMRE 599
S I L+ I+I W++L F D V+I E I +RF + D KL +K ++ E
Sbjct: 13 SSIPLETIHIFWRRLSFS---DQGLCETQVTITEEKETILKRFEQLDVCGKLHLKSKL*E 183
Query: 600 MTFPHTTSLTPPIQKLKTKGAQKGAQKRKRSTLDDSSTTREPSFWEHVDAQFPDSQASQT 659
+ +P+ S+ PP +K+KTKGA K K T ST R PS+W++VD
Sbjct: 184 IAYPNMNSMCPPPEKVKTKGASK-----KPLTKQQKSTKRYPSYWKYVDVLH-------- 324
Query: 660 KPSLQKKKSVCVVNPSSTPTPTQ--YIPCIDQMPNVMKPYIEKIVNVDGDGYCGYRVVA 716
S+Q S+ + SS+ P Q IP +DQ ++ IE I+ V +G CGYR +A
Sbjct: 325 --SVQNSNSLVKHSASSSEEPIQRWNIPMLDQFHPCIQDSIENIIGVKANGNCGYRAIA 495
>BI786825
Length = 421
Score = 93.2 bits (230), Expect = 4e-19
Identities = 56/152 (36%), Positives = 84/152 (54%)
Frame = +1
Query: 593 IKEQMREMTFPHTTSLTPPIQKLKTKGAQKGAQKRKRSTLDDSSTTREPSFWEHVDAQFP 652
+K ++RE+ +P S+ P K+ TKGA K + R + ST R+PS+W++VDA F
Sbjct: 1 LKSKLREIAYPDQNSMCHPPAKVNTKGAPKKSMNR-----NPRSTKRDPSYWKYVDA-FH 162
Query: 653 DSQASQTKPSLQKKKSVCVVNPSSTPTPTQYIPCIDQMPNVMKPYIEKIVNVDGDGYCGY 712
Q S + V+ S P P + +P +DQ + ++ +I+ IV+V D CGY
Sbjct: 163 SVQNSNSSVRHS-------VSSSYQPNPRRIMPMLDQFQSFIQDFIDNIVDVKPDRNCGY 321
Query: 713 RVVAENLGLGSDSYGLVPLALIKELTGKKNDY 744
R VA LG+G +S+ LV L+KEL NDY
Sbjct: 322 RSVASLLGMGENSWSLVCNHLLKELDKFSNDY 417
>BU545334
Length = 556
Score = 92.0 bits (227), Expect = 9e-19
Identities = 52/133 (39%), Positives = 79/133 (59%), Gaps = 4/133 (3%)
Frame = -1
Query: 31 REEMINWARGQAIEAGFTLIIDKS--YSGSGRRKPKLVLAFERSGEYKGTKKSKR-EGTG 87
R+ ++ R A E GF +I +S ++GS R +++ ER+G+YK K G
Sbjct: 412 RDYVLQ*XRSVAHENGFAAVIMRSDTHTGSRGRSSFVLIGCERNGQYKCRNKXXVIRAIG 233
Query: 88 SRKCGCPFRLRGY-FSATKLWSLNIVSGLHNHKMEPKLEGHMLAGRLTAKESKIVGDMTR 146
SRK GCPF+LRG + W + ++ G+HNH++ L H AGRLT E I+ D+T+
Sbjct: 232 SRKYGCPFKLRGKPVIGGQGWMMKLICGIHNHELAKSLVEHPYAGRLTKDEKTIIVDITK 53
Query: 147 NLIKPKNILLDLK 159
+++KP+NILL LK
Sbjct: 52 SMVKPRNILLILK 14
>BG839904
Length = 712
Score = 90.9 bits (224), Expect = 2e-18
Identities = 64/180 (35%), Positives = 96/180 (52%), Gaps = 18/180 (10%)
Frame = -3
Query: 15 DVAEFFVTKEKKKYEDREEMINWARGQAIEAGFTLIIDKSYSGS--------GRRKPKLV 66
D ++ F T E + RE M+NWAR A E GF LII +S + + +RK ++
Sbjct: 518 DCSDAFNTTEV--FPSREAMLNWARDVAKENGFVLIILRSETSTTCTRSTRCNQRKTFVI 345
Query: 67 LAFERSGEYKGTKKSK--REGTGSRKCGCPFRLRGY-FSATKLWSLNIVSGLHNHKMEPK 123
+ +RSG+Y+G K++ R+ +G+RKC CPF+L+G + W + ++ G HNH +
Sbjct: 344 MGCDRSGKYRGPYKNELSRKVSGTRKCECPFKLKGKALKKAEGWIVKVMCGCHNHDLXET 165
Query: 124 LEGHMLAGRLTAKE-------SKIVGDMTRNLIKPKNILLDLKGRWKDNRTVAKQIYNAR 176
L GH AGRL+A+E K + R+ I I+ W T+ KQIYNAR
Sbjct: 164 LVGHPYAGRLSAEEKSFGRCFDKEHDEAXRHSIDH*KII-----TWVTVTTI-KQIYNAR 3
>AW507853
Length = 440
Score = 85.1 bits (209), Expect = 1e-16
Identities = 54/147 (36%), Positives = 78/147 (52%)
Frame = +1
Query: 615 LKTKGAQKGAQKRKRSTLDDSSTTREPSFWEHVDAQFPDSQASQTKPSLQKKKSVCVVNP 674
+ TKGA K K+ + ST R+PS+WE+VDA F Q+S + C +
Sbjct: 1 VNTKGAPKKPMKKSQR-----STKRDPSYWEYVDA-FHSVQSSNSSVK-------CSASC 141
Query: 675 SSTPTPTQYIPCIDQMPNVMKPYIEKIVNVDGDGYCGYRVVAENLGLGSDSYGLVPLALI 734
S P PT I +DQ ++ +I +V+V D GYR +A LG+G DS+ L+ LI
Sbjct: 142 SEPPQPTTIISMLDQFAPFIQGFIRDVVDVKADDNYGYRSIAAXLGMGEDSWPLLRNELI 321
Query: 735 KELTGKKNDYSGIFGGEDRLKFLIDSL 761
KEL ++Y +FGG +R + L SL
Sbjct: 322 KELGRWSHEYMNLFGGTERFEQLKLSL 402
>AW761314
Length = 331
Score = 79.0 bits (193), Expect = 8e-15
Identities = 42/94 (44%), Positives = 60/94 (63%)
Frame = +1
Query: 114 GLHNHKMEPKLEGHMLAGRLTAKESKIVGDMTRNLIKPKNILLDLKGRWKDNRTVAKQIY 173
G NH++ L H A RLT E+ I+ +MT++++KPKNILL LK ++ T KQIY
Sbjct: 49 GSDNHELVKSLVRHPYASRLTKDENIIITNMTKSMVKPKNILLTLKEHNVNSYTAIKQIY 228
Query: 174 NARHRYKLSIRGSR*EMQELFQKFEENNYVFNYR 207
NAR Y SIRGS +MQ+L + E++ Y+ +R
Sbjct: 229 NARSAYCSSIRGSDTKMQQLMKLLEQDQYIHWHR 330
>TC218819 similar to UP|O03160 (O03160) NADH dehydrogenase subunit 2, partial
(5%)
Length = 732
Score = 76.6 bits (187), Expect = 4e-14
Identities = 38/108 (35%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Frame = +1
Query: 505 RVKDCGSD--SKKCGCVIRWTHALPCTCLIYKKLNLGSCIRLDEINIHWKKLCFEVDDDV 562
RVK G D CGC IR TH LPC C + K I L I++HW+ L F D ++
Sbjct: 10 RVKTVGIDIDGSLCGCTIRTTHGLPCACELAKYSRTWHPIPLQAIHVHWRTLNFS-DQEM 186
Query: 563 EESNRHVSIQNELNAIQERFNKADYNMKLIIKEQMREMTFPHTTSLTP 610
+++Q E++A+ +F + DY K+ +K ++RE+ FP + P
Sbjct: 187 NNEGLELALQREVDALHNQFQELDYAGKITLKAKLRELAFPDAILMCP 330
>TC234242
Length = 478
Score = 74.7 bits (182), Expect = 2e-13
Identities = 37/95 (38%), Positives = 60/95 (62%), Gaps = 5/95 (5%)
Frame = +3
Query: 189 EMQELFQKFEENNYVFNYRTVSGSRTVQDLFFAHPESVKLFNTFPTVLVMDSTYKTNQYK 248
EMQ L + E + Y+ +R + V+D+F+ HP+SVKL N V ++DSTY+TN+Y+
Sbjct: 15 EMQHLMKFLERDQYIHWHR-IKDEDVVRDIFWCHPDSVKLVNACNLVFLIDSTYRTNRYR 191
Query: 249 MPL-----FEIVGLTSTEMTYNVGFAFLTMEKEDN 278
+PL + VG+T T MT++ FA++ E+ +N
Sbjct: 192 LPLLDFVVLDFVGMTPTGMTFSASFAYVEGERVNN 296
>BM108203
Length = 448
Score = 63.9 bits (154), Expect(2) = 6e-13
Identities = 36/116 (31%), Positives = 61/116 (52%)
Frame = +3
Query: 590 KLIIKEQMREMTFPHTTSLTPPIQKLKTKGAQKGAQKRKRSTLDDSSTTREPSFWEHVDA 649
K+I+ ++ E+ FP S PP++++ TK A +G + + D ST +PS+WEHV A
Sbjct: 3 KIILMAKLHEIAFPVKISKCPPLEEVGTKHALEGPRLKS-----DGSTKFDPSYWEHVHA 167
Query: 650 QFPDSQASQTKPSLQKKKSVCVVNPSSTPTPTQYIPCIDQMPNVMKPYIEKIVNVD 705
P +++ PS K P + +P +DQ P + P+IE I++V+
Sbjct: 168 LHPTHDITKSLPSSXK--------PVHESKRRRVLPMMDQFPVEIHPFIEDIIDVE 311
Score = 28.9 bits (63), Expect(2) = 6e-13
Identities = 13/23 (56%), Positives = 15/23 (64%)
Frame = +2
Query: 706 GDGYCGYRVVAENLGLGSDSYGL 728
GD CGYR VA LG+G + GL
Sbjct: 314 GDSNCGYRAVAAPLGMG*KNPGL 382
>BE057981
Length = 268
Score = 65.1 bits (157), Expect = 1e-10
Identities = 31/82 (37%), Positives = 53/82 (63%)
Frame = +2
Query: 197 FEENNYVFNYRTVSGSRTVQDLFFAHPESVKLFNTFPTVLVMDSTYKTNQYKMPLFEIVG 256
FE + Y+ +R + V+DLF+ H ++VKL N V ++++ YKTN+Y++ L + G
Sbjct: 11 FERDQYIHWHR-LKDEFVVRDLFWCHLDAVKLCNACHLVFLINNAYKTNRYRLLLLDFAG 187
Query: 257 LTSTEMTYNVGFAFLTMEKEDN 278
+T MT++VGFA+L E+ +N
Sbjct: 188 VTPARMTFSVGFAYLEGERVNN 253
>AW200845
Length = 343
Score = 64.7 bits (156), Expect = 2e-10
Identities = 29/67 (43%), Positives = 44/67 (65%)
Frame = +1
Query: 359 IMNAWEVIVSSPSEELYADAVLQFRKVCEQFPKFLKYVESTILEPLKKKIVKAWTNRVMH 418
+M+ W +V PSE +A+++ +F+ +P F+ YV T + P K+KI+ AWTN+VMH
Sbjct: 70 VMDNWGTLVDCPSEH*FAESLQKFQIA*PPWPMFVDYVNDTWIIPHKEKIITAWTNKVMH 249
Query: 419 FGCTTTN 425
G TTTN
Sbjct: 250 LGNTTTN 270
>BM892478
Length = 429
Score = 58.5 bits (140), Expect = 1e-08
Identities = 33/126 (26%), Positives = 60/126 (47%)
Frame = +3
Query: 192 ELFQKFEENNYVFNYRTVSGSRTVQDLFFAHPESVKLFNTFPTVLVMDSTYKTNQYKMPL 251
E FQ + + F Y + ++F+A S + F VLV+D++Y+ Y +P
Sbjct: 36 EYFQSRQAEDTGFFYAMEVDNGNCMNIFWADGRSRYSCSHFGDVLVLDTSYRKTVYLVPF 215
Query: 252 FEIVGLTSTEMTYNVGFAFLTMEKEDNFTWGLQESANLLKCKKQMPKVIVTDRDTGLMNA 311
VG+ + +G A + E E++FTW Q + + +P ++ D+D + A
Sbjct: 216 ATFVGVNHHKQPVLLGCALIADESEESFTWLFQTWLRAMSGR--LPLTVIADQDIAIQRA 389
Query: 312 VANIFP 317
+A +FP
Sbjct: 390 IAKVFP 407
>AW569215 weakly similar to GP|4914326|gb| F14N23.12 {Arabidopsis thaliana},
partial (19%)
Length = 425
Score = 48.5 bits (114), Expect = 1e-05
Identities = 30/94 (31%), Positives = 47/94 (49%)
Frame = +1
Query: 236 LVMDSTYKTNQYKMPLFEIVGLTSTEMTYNVGFAFLTMEKEDNFTWGLQESANLLKCKKQ 295
+V D+TY+ Y M L +G+ + MT A L E +F+W L+ +K K
Sbjct: 10 VVFDTTYRVEAYDMLLGIWLGVDNNGMTCFFSCALLRDENIQSFSWALKAFLGFMKGK-- 183
Query: 296 MPKVIVTDRDTGLMNAVANIFPKSTALVCEFHIL 329
P+ I+TD + L A+A P++ C +HIL
Sbjct: 184 APQTILTDHNMWLKEAIAVELPQTKHAFCIWHIL 285
>BI497763
Length = 421
Score = 37.4 bits (85), Expect(2) = 2e-05
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 105 KLWSLNIVSGLHNHKMEPKLEGHMLAGRLTAKESKIVGDMTR 146
K W + ++ G HNH++ L H GRLT E I+ +MT+
Sbjct: 41 KGWMVKLLCGSHNHELTKSLVEHPYVGRLTKDEKTIIVNMTK 166
Score = 30.0 bits (66), Expect(2) = 2e-05
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +3
Query: 148 LIKPKNILLDLKGRWKDNRTVAKQIYNARHRYKL 181
LI P+NILL LK + T +QIYNAR + L
Sbjct: 153 LI*PRNILLMLKEYNANGCTTIRQIYNARGKMSL 254
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.136 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,947,513
Number of Sequences: 63676
Number of extensions: 544713
Number of successful extensions: 2951
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 2908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2929
length of query: 840
length of database: 12,639,632
effective HSP length: 105
effective length of query: 735
effective length of database: 5,953,652
effective search space: 4375934220
effective search space used: 4375934220
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Medicago: description of AC138063.5