BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138063.3 - phase: 0 /pseudo
(111 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC222955 weakly similar to UP|Q9SGR0 (Q9SGR0) T23E18.17, partial... 31 0.077
TC229926 similar to UP|Q93VB2 (Q93VB2) AT3g62770/F26K9_200, part... 29 0.38
TC205651 similar to UP|TLPH_ARATH (P50699) Thaumatin-like protei... 29 0.38
CF922568 28 0.66
TC218885 homologue to GB|AAB63540.1|1871180|U90439 expressed pro... 28 0.66
BE659998 28 0.86
BE211243 27 1.1
TC227925 similar to UP|OLP1_LYCES (Q41350) Osmotin-like protein ... 27 1.1
TC226776 similar to GB|AAP68287.1|31711862|BT008848 At1g02720 {A... 27 1.1
CF922392 27 1.1
TC218701 weakly similar to UP|Q9LFY2 (Q9LFY2) T7N9.11, partial (... 27 1.5
TC204727 weakly similar to UP|O44358 (O44358) Flagelliform silk ... 27 1.5
TC205652 similar to UP|TLPH_ARATH (P50699) Thaumatin-like protei... 27 1.5
TC218127 weakly similar to UP|AP47_CAEEL (P35602) Clathrin coat ... 27 1.9
TC209974 similar to UP|GP1_CHLRE (Q9FPQ6) Vegetative cell wall p... 27 1.9
TC204728 weakly similar to UP|Q94FP5 (Q94FP5) Glycine-rich prote... 27 1.9
CD416342 similar to SP|P42698|D111_ DNA-damage-repair/toleration... 26 2.5
TC211355 similar to GB|AAN72279.1|25090334|BT002268 At2g23390/F2... 26 2.5
BM107962 similar to GP|7267102|emb| scarecrow-like 6 (SCL6) {Ara... 26 2.5
TC230698 similar to UP|Q9LVA9 (Q9LVA9) Gb|AAC32909.1, partial (27%) 26 3.3
>TC222955 weakly similar to UP|Q9SGR0 (Q9SGR0) T23E18.17, partial (25%)
Length = 825
Score = 31.2 bits (69), Expect = 0.077
Identities = 15/42 (35%), Positives = 27/42 (63%), Gaps = 1/42 (2%)
Frame = +2
Query: 60 PSAKRTKNSASGAYLASSNPPTPTSEYNPPQLP-IGQKAAKK 100
PS + T+N S++PPTP+ NPP+ P +G++A+++
Sbjct: 74 PSQRHTRNP-------STHPPTPSDSRNPPKPPSLGREASRR 178
>TC229926 similar to UP|Q93VB2 (Q93VB2) AT3g62770/F26K9_200, partial (46%)
Length = 829
Score = 28.9 bits (63), Expect = 0.38
Identities = 15/36 (41%), Positives = 21/36 (57%)
Frame = +1
Query: 54 AGCVLEPSAKRTKNSASGAYLASSNPPTPTSEYNPP 89
A PSA+R++ SAS A +SS+ PT +S P
Sbjct: 490 AASASSPSARRSRASASAATESSSSSPTRSSSTTSP 597
>TC205651 similar to UP|TLPH_ARATH (P50699) Thaumatin-like protein precursor,
partial (91%)
Length = 1285
Score = 28.9 bits (63), Expect = 0.38
Identities = 12/36 (33%), Positives = 18/36 (49%)
Frame = -3
Query: 70 SGAYLASSNPPTPTSEYNPPQLPIGQKAAKKKGKEK 105
+ A +A PP P +PPQ P+ Q+ KE+
Sbjct: 356 NSARVAGGLPPMPLQNRDPPQSPVAQRPRPPASKEQ 249
>CF922568
Length = 387
Score = 28.1 bits (61), Expect = 0.66
Identities = 11/24 (45%), Positives = 16/24 (65%)
Frame = +2
Query: 82 PTSEYNPPQLPIGQKAAKKKGKEK 105
P ++ PPQ+P +KA KKGK +
Sbjct: 248 PGGKFFPPQIPPKKKAGNKKGKPR 319
>TC218885 homologue to GB|AAB63540.1|1871180|U90439 expressed protein
{Arabidopsis thaliana;} , partial (23%)
Length = 696
Score = 28.1 bits (61), Expect = 0.66
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = -2
Query: 58 LEPSAKRTKNSASGAYLASSNPPTPTSEYNPPQLPIGQKAAKKKGKEK 105
L P + +S++ +S+PP+P + + KKKGK+K
Sbjct: 434 LSPCQASSSSSSTSLLSLASSPPSPQRAQHHQHTQFASRENKKKGKKK 291
>BE659998
Length = 868
Score = 27.7 bits (60), Expect = 0.86
Identities = 13/29 (44%), Positives = 18/29 (61%)
Frame = -3
Query: 65 TKNSASGAYLASSNPPTPTSEYNPPQLPI 93
T +SA+ ASS+PP+ TS P LP+
Sbjct: 350 TASSAASVDAASSHPPSATSSPYPTSLPL 264
>BE211243
Length = 238
Score = 27.3 bits (59), Expect = 1.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -2
Query: 79 PPTPTSEYNPPQLPIGQKAAKKKGKEK 105
PP P+ +Y PP +P GK+K
Sbjct: 237 PPPPSKKYGPPNIPWDPTEVGNPGKKK 157
>TC227925 similar to UP|OLP1_LYCES (Q41350) Osmotin-like protein precursor,
partial (88%)
Length = 1035
Score = 27.3 bits (59), Expect = 1.1
Identities = 12/31 (38%), Positives = 18/31 (57%)
Frame = -2
Query: 68 SASGAYLASSNPPTPTSEYNPPQLPIGQKAA 98
++S A +A + PP P PPQ P+ Q+ A
Sbjct: 377 TSSWARVAGAAPPAPLHWRRPPQSPLAQEKA 285
>TC226776 similar to GB|AAP68287.1|31711862|BT008848 At1g02720 {Arabidopsis
thaliana;} , partial (68%)
Length = 1307
Score = 27.3 bits (59), Expect = 1.1
Identities = 17/44 (38%), Positives = 22/44 (49%), Gaps = 10/44 (22%)
Frame = +2
Query: 59 EPSAKRTKNSASGAYL----------ASSNPPTPTSEYNPPQLP 92
+PSA T ++AS A L S+ PPTPT+ PP P
Sbjct: 536 KPSAPPTTSTASSASLRLAFPSAPPLVSAMPPTPTNAPPPPSPP 667
Score = 26.6 bits (57), Expect = 1.9
Identities = 15/32 (46%), Positives = 17/32 (52%)
Frame = +2
Query: 60 PSAKRTKNSASGAYLASSNPPTPTSEYNPPQL 91
PSA+RT +S S SS PT NPP L
Sbjct: 764 PSARRTSSSTS-----SSPKPTSNPSSNPPSL 844
>CF922392
Length = 494
Score = 27.3 bits (59), Expect = 1.1
Identities = 17/45 (37%), Positives = 19/45 (41%), Gaps = 14/45 (31%)
Frame = +2
Query: 71 GAYLASSNPPTPTSEYNPPQL--------------PIGQKAAKKK 101
G L S NPP P ++ PP L P GQK KKK
Sbjct: 281 GIPLFSGNPPPPGAKQKPPSLAPPPLWQTPKKQKPPPGQKPPKKK 415
>TC218701 weakly similar to UP|Q9LFY2 (Q9LFY2) T7N9.11, partial (19%)
Length = 929
Score = 26.9 bits (58), Expect = 1.5
Identities = 12/43 (27%), Positives = 20/43 (45%)
Frame = +3
Query: 50 PKWLAGCVLEPSAKRTKNSASGAYLASSNPPTPTSEYNPPQLP 92
P+ + P ++ T S + A A+ + +PT PP LP
Sbjct: 249 PRTAPSSISSPDSRSTAPSPASASTATPSDTSPTGPRTPPTLP 377
>TC204727 weakly similar to UP|O44358 (O44358) Flagelliform silk protein
(Fragment), partial (5%)
Length = 726
Score = 26.9 bits (58), Expect = 1.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 78 NPPTPTSEYNPPQLPIGQKAAKKKGK 103
NPP+P S PP LP + KG+
Sbjct: 279 NPPSPPSPEGPPILPSNPEPTPPKGR 202
>TC205652 similar to UP|TLPH_ARATH (P50699) Thaumatin-like protein precursor,
partial (85%)
Length = 695
Score = 26.9 bits (58), Expect = 1.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 70 SGAYLASSNPPTPTSEYNPPQLPIGQK 96
+ A +A PP P + +PPQ P+ Q+
Sbjct: 347 NSARVAGGLPPMPLQKRDPPQSPVAQR 267
>TC218127 weakly similar to UP|AP47_CAEEL (P35602) Clathrin coat assembly
protein AP47 (Clathrin coat associated protein AP47)
(Golgi adaptor AP-1 47 kDa protein) (HA1 47 kDa
subunit) (Clathrin assembly protein assembly protein
complex 1 medium chain) (Uncoordinated protein 101),
partial (17%)
Length = 603
Score = 26.6 bits (57), Expect = 1.9
Identities = 15/67 (22%), Positives = 30/67 (44%)
Frame = +2
Query: 22 ISAAKDIYYQDVREKFTLENAWKLLRDEPKWLAGCVLEPSAKRTKNSASGAYLASSNPPT 81
+S Y F ++ L+ + +W +L S+ S+SGA A+++PP+
Sbjct: 11 LSETTTTLYSSPSSSFCVDGGVDLIGIQDQWQGQPLLCSSSTSKAASSSGATTAATSPPS 190
Query: 82 PTSEYNP 88
+ +P
Sbjct: 191TPNASSP 211
>TC209974 similar to UP|GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1
precursor (Hydroxyproline-rich glycoprotein 1), partial
(6%)
Length = 505
Score = 26.6 bits (57), Expect = 1.9
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Frame = -2
Query: 28 IYYQDV--REKFTLENA-WKLLRDEPKWLAGCVLEPSAKRTKNSASGAYLASSNPPTPTS 84
IYY ++KF N W L + +P+W L + +T S PPT T+
Sbjct: 348 IYYNSSSKKQKFDFSNQEWCLEQHQPEWSVNTALTSTVLQTTRRLVWLASFRSTPPTTTT 169
>TC204728 weakly similar to UP|Q94FP5 (Q94FP5) Glycine-rich protein GRP14,
partial (25%)
Length = 579
Score = 26.6 bits (57), Expect = 1.9
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -1
Query: 74 LASSNPPTPTSEYNPPQLPIGQKAAKKKG 102
L NPP P S PP LP + KG
Sbjct: 297 LGPPNPPNPPSPEGPPILPSNPEPTPPKG 211
>CD416342 similar to SP|P42698|D111_ DNA-damage-repair/toleration protein
DRT111 chloroplast precursor. [Mouse-ear cress],
partial (24%)
Length = 624
Score = 26.2 bits (56), Expect = 2.5
Identities = 14/44 (31%), Positives = 20/44 (44%), Gaps = 1/44 (2%)
Frame = -1
Query: 50 PKWLAG-CVLEPSAKRTKNSASGAYLASSNPPTPTSEYNPPQLP 92
P+WL P + R + G + S PP+P+S PP P
Sbjct: 321 PRWLPPRSASPPPSSRPPKPSYGPTPSPSPPPSPSSPPPPPPFP 190
>TC211355 similar to GB|AAN72279.1|25090334|BT002268 At2g23390/F26B6.4
{Arabidopsis thaliana;} , partial (42%)
Length = 756
Score = 26.2 bits (56), Expect = 2.5
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = -2
Query: 37 FTLENAWKLLRDEPKWLAGCVLEP---SAKRTKNSASGAYLASS 77
FT W +L+ PKWLA + +A R K S + +SS
Sbjct: 674 FTTRELWNILQTVPKWLARILKSLTF*AASRIKKSCIASLNSSS 543
>BM107962 similar to GP|7267102|emb| scarecrow-like 6 (SCL6) {Arabidopsis
thaliana}, partial (5%)
Length = 676
Score = 26.2 bits (56), Expect = 2.5
Identities = 14/36 (38%), Positives = 17/36 (46%), Gaps = 3/36 (8%)
Frame = +3
Query: 58 LEPSAKRTKNSASGAYLASSNPPTPTSEY---NPPQ 90
L S T G ++N PTP S+Y NPPQ
Sbjct: 105 LGSSNNSTSKGGGGTSANTTNNPTPPSDYNNNNPPQ 212
>TC230698 similar to UP|Q9LVA9 (Q9LVA9) Gb|AAC32909.1, partial (27%)
Length = 685
Score = 25.8 bits (55), Expect = 3.3
Identities = 11/29 (37%), Positives = 17/29 (57%)
Frame = +2
Query: 75 ASSNPPTPTSEYNPPQLPIGQKAAKKKGK 103
ASS P P S ++PP P G+ + + G+
Sbjct: 77 ASSPEPLPESSHSPPIRPPGEAPSTQHGR 163
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.310 0.128 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,348,292
Number of Sequences: 63676
Number of extensions: 73430
Number of successful extensions: 678
Number of sequences better than 10.0: 102
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of query: 111
length of database: 12,639,632
effective HSP length: 87
effective length of query: 24
effective length of database: 7,099,820
effective search space: 170395680
effective search space used: 170395680
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)
Medicago: description of AC138063.3