TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC138017.12 + phase: 1 /pseudo
         (95 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CD413089                                                              116  2e-27
TC231242                                                               90  2e-19
TC235121 similar to GB|AAR92318.1|40823959|BT011282 At5g10310 {A...    79  3e-16
TC210400 similar to GB|AAR92318.1|40823959|BT011282 At5g10310 {A...    69  3e-13
TC232261 weakly similar to UP|Q65198 (Q65198) PE199L, partial (7%)     40  5e-07
TC213729 similar to UP|Q9LUH9 (Q9LUH9) Arabidopsis thaliana geno...    45  6e-06
BM095113                                                               44  2e-05
TC233999 homologue to UP|Q9LUH9 (Q9LUH9) Arabidopsis thaliana ge...    35  2e-05
BI700144                                                               42  4e-05
TC229676 similar to UP|Q9LUH9 (Q9LUH9) Arabidopsis thaliana geno...    41  9e-05
TC213636                                                               33  0.030
BU550776 similar to GP|20197702|gb| predicted protein {Arabidops...    30  0.20
TC205425 similar to UP|O23718 (O23718) 20S proteasome beta subun...    30  0.26
TC232114 similar to UP|Q8VZF5 (Q8VZF5) AT3g14400/MLN21_18, parti...    28  0.98
TC215010 homologue to UP|Q94GV7 (Q94GV7) Cytoplasmic ribosomal p...    27  2.2
CD405056                                                               26  2.8
BG352242 similar to GP|21539882|gb| transcription activator {Ara...    26  2.8
TC216023 similar to GB|AAM78036.1|21928015|AY125526 At2g01100/F2...    26  2.8
TC228715 similar to UP|APH1_ARATH (Q8L9G7) Gamma-secretase subun...    25  4.9

>CD413089 
          Length = 535

 Score =  116 bits (290), Expect = 2e-27
 Identities = 60/101 (59%), Positives = 67/101 (65%), Gaps = 7/101 (6%)
 Frame = -1

Query: 2   GRPISNLNEVAKNGMEENGSMLAEKLQIGSRPPKCERRCRSCVHCEAVQVPIVPSKVQIH 61
           GR IS+  EVA   M     ++    +IGSRPPKCE+RC SC HCEAVQVP+VP   Q H
Sbjct: 439 GRTISSFVEVAPKEMR----IMVA*PRIGSRPPKCEKRCSSCGHCEAVQVPVVPQIFQTH 272

Query: 62  -RSHYDS------AAYSSRGDGLSNYKPISWKCKCGDYFFN 95
            R HY S        YSSRGD LSNYKP+SWKCKCGDY FN
Sbjct: 271 RRRHYSSERAT*AVTYSSRGDDLSNYKPMSWKCKCGDYLFN 149


>TC231242 
          Length = 486

 Score = 89.7 bits (221), Expect = 2e-19
 Identities = 42/74 (56%), Positives = 51/74 (68%), Gaps = 4/74 (5%)
 Frame = +3

Query: 26  KLQIGSRPPKCERRCRSCVHCEAVQVPIVPSKVQIHRSHYDSAAYS----SRGDGLSNYK 81
           + QIGSRPP+CERRCRSC HCEA+QVP  P   Q      +S+  S    + G+G SNYK
Sbjct: 96  RAQIGSRPPRCERRCRSCGHCEAIQVPTNP---QAQNGKINSSTVSTIVFTMGEGSSNYK 266

Query: 82  PISWKCKCGDYFFN 95
           P+SWKCKCG+  FN
Sbjct: 267 PMSWKCKCGNRIFN 308


>TC235121 similar to GB|AAR92318.1|40823959|BT011282 At5g10310 {Arabidopsis
           thaliana;} , partial (39%)
          Length = 387

 Score = 79.3 bits (194), Expect = 3e-16
 Identities = 36/74 (48%), Positives = 47/74 (62%), Gaps = 3/74 (4%)
 Frame = +1

Query: 25  EKLQIGSRPPKCERRCRSCVHCEAVQVPIVPSKVQIHRSHYDSAA---YSSRGDGLSNYK 81
           EK ++GS PP C  +C  C  C AVQVP  PS  ++H     +AA   +  +G+  SNYK
Sbjct: 37  EKNRLGSMPPTCHNKCNRCHPCMAVQVPASPSHERVHPGLAPTAAMEVFFLQGNRYSNYK 216

Query: 82  PISWKCKCGDYFFN 95
           P+SWKC CGD+FFN
Sbjct: 217 PLSWKCHCGDHFFN 258


>TC210400 similar to GB|AAR92318.1|40823959|BT011282 At5g10310 {Arabidopsis
           thaliana;} , partial (48%)
          Length = 1013

 Score = 69.3 bits (168), Expect = 3e-13
 Identities = 34/81 (41%), Positives = 45/81 (54%), Gaps = 7/81 (8%)
 Frame = +3

Query: 22  MLAEKLQIGSRPPKCERRCRSCVHCEAVQVPIVPSKVQIHRSHYDSAAYSS-------RG 74
           +  EK ++GS PP C  +C  C  C AVQVP + S          +AA +S       +G
Sbjct: 642 LFGEKNRLGSIPPSCHNKCNDCHPCMAVQVPTLLSHDSNPPDLTKTAAMASFLNPSSPQG 821

Query: 75  DGLSNYKPISWKCKCGDYFFN 95
           +  SNYKP+ WKC CGD+FFN
Sbjct: 822 NRYSNYKPLGWKCHCGDHFFN 884


>TC232261 weakly similar to UP|Q65198 (Q65198) PE199L, partial (7%)
          Length = 502

 Score = 39.7 bits (91), Expect(2) = 5e-07
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 9   NEVAKNGMEENGSMLAEK-LQIGSRPPKCERRCRSCVHCEAVQV 51
           N V     ++ G +L +K L +GSRPPKC  +C SC  C A  V
Sbjct: 98  NSVGSASAKDGGKVLKQKKLVLGSRPPKCVNKCLSCKPCMAALV 229



 Score = 28.5 bits (62), Expect(2) = 5e-07
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +1

Query: 83  ISWKCKCGDYFF 94
           +SWKCKCG+ FF
Sbjct: 301 LSWKCKCGNKFF 336


>TC213729 similar to UP|Q9LUH9 (Q9LUH9) Arabidopsis thaliana genomic DNA,
           chromosome 3, P1 clone: MWI23 (At3g22820), partial (50%)
          Length = 722

 Score = 45.1 bits (105), Expect = 6e-06
 Identities = 27/102 (26%), Positives = 37/102 (35%), Gaps = 8/102 (7%)
 Frame = +2

Query: 1   AGRPISNLNEVAKNGMEENGSMLAEKLQI--------GSRPPKCERRCRSCVHCEAVQVP 52
           AGR    L E    G+   G M    +          GS PP+C  +C  C  C  V VP
Sbjct: 353 AGRDFQELKEKNGQGLVFGGKMEVSSMGWHRRLLGGPGSSPPRCTSKCGRCTPCRPVHVP 532

Query: 53  IVPSKVQIHRSHYDSAAYSSRGDGLSNYKPISWKCKCGDYFF 94
           + P                      + Y P +W+CKCG+  +
Sbjct: 533 VPPGT-----------------PVTAEYYPEAWRCKCGNKLY 607


>BM095113 
          Length = 428

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 27/102 (26%), Positives = 40/102 (38%), Gaps = 8/102 (7%)
 Frame = +1

Query: 1   AGRPISNLNEVAKNGMEENGSMLAEKLQI--------GSRPPKCERRCRSCVHCEAVQVP 52
           AGR    L E    G+   G +    +          GS PP+C  +C  C  C  V VP
Sbjct: 157 AGRDFQELKEENGQGLVFGGKIEVSSMGWDRRLLGGPGSSPPRCTSKCGRCTPCRPVHVP 336

Query: 53  IVPSKVQIHRSHYDSAAYSSRGDGLSNYKPISWKCKCGDYFF 94
            VP  +++   +Y                P +W+CKCG+  +
Sbjct: 337 -VPPGMRVTAEYY----------------PEAWRCKCGNKLY 411


>TC233999 homologue to UP|Q9LUH9 (Q9LUH9) Arabidopsis thaliana genomic DNA,
           chromosome 3, P1 clone: MWI23 (At3g22820), partial (17%)
          Length = 700

 Score = 34.7 bits (78), Expect(2) = 2e-05
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 30  GSRPPKCERRCRSCVHCEAVQVPIVP 55
           GS PP+C  +C  C  C  V VP+ P
Sbjct: 486 GSSPPRCTSKCGRCTPCRPVHVPVPP 563



 Score = 28.1 bits (61), Expect(2) = 2e-05
 Identities = 11/23 (47%), Positives = 16/23 (68%), Gaps = 1/23 (4%)
 Frame = +1

Query: 73  RGDGL-SNYKPISWKCKCGDYFF 94
           RG GL + Y P +W+CKCG+  +
Sbjct: 562 RGCGLXAEYYPEAWRCKCGNKLY 630


>BI700144 
          Length = 421

 Score = 42.4 bits (98), Expect = 4e-05
 Identities = 19/62 (30%), Positives = 26/62 (41%)
 Frame = +1

Query: 30  GSRPPKCERRCRSCVHCEAVQVPIVPSKVQIHRSHYDSAAYSSRGDGLSNYKPISWKCKC 89
           GS PP+C  +C  C  C  V VP+ P                      + Y P +W+CKC
Sbjct: 283 GSSPPRCTSKCGRCTPCRPVHVPVPPGT-----------------PVTAEYYPEAWRCKC 411

Query: 90  GD 91
           G+
Sbjct: 412 GN 417


>TC229676 similar to UP|Q9LUH9 (Q9LUH9) Arabidopsis thaliana genomic DNA,
           chromosome 3, P1 clone: MWI23 (At3g22820), partial (60%)
          Length = 817

 Score = 41.2 bits (95), Expect = 9e-05
 Identities = 21/65 (32%), Positives = 28/65 (42%)
 Frame = +3

Query: 30  GSRPPKCERRCRSCVHCEAVQVPIVPSKVQIHRSHYDSAAYSSRGDGLSNYKPISWKCKC 89
           GS PP C  +C  C  C  V VP+ P  + I   +Y                P +W+CKC
Sbjct: 336 GSSPPSCRSKCGWCSPCFPVHVPVQPGLI-IRLEYY----------------PEAWRCKC 464

Query: 90  GDYFF 94
           G+  F
Sbjct: 465 GNKLF 479


>TC213636 
          Length = 682

 Score = 32.7 bits (73), Expect = 0.030
 Identities = 12/37 (32%), Positives = 19/37 (50%)
 Frame = +2

Query: 28  QIGSRPPKCERRCRSCVHCEAVQVPIVPSKVQIHRSH 64
           ++ +R P+C RRCR C+       P +P +    R H
Sbjct: 269 RVSARSPRCSRRCRQCLRSRCCVAPRLPRRHAQGRRH 379


>BU550776 similar to GP|20197702|gb| predicted protein {Arabidopsis
           thaliana}, partial (35%)
          Length = 592

 Score = 30.0 bits (66), Expect = 0.20
 Identities = 17/37 (45%), Positives = 18/37 (47%), Gaps = 1/37 (2%)
 Frame = -1

Query: 16  MEENGSMLAEKLQI-GSRPPKCERRCRSCVHCEAVQV 51
           M+  GS     LQI GSR P C   C SC  C  V V
Sbjct: 361 MDNIGSRRGRTLQIAGSRLPDCMHACGSCSPCRLVTV 251


>TC205425 similar to UP|O23718 (O23718) 20S proteasome beta subunit PBG1  ,
           partial (92%)
          Length = 1076

 Score = 29.6 bits (65), Expect = 0.26
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 40  CRSCVHCEAVQVPIVPSKVQIHRSHYDSAAYSSRGDGLSNYKPIS 84
           C+SC  C+       P +VQ+H +   +        GL+NY P S
Sbjct: 553 CQSC*PCQGTSARFSPHQVQVHSTMG*TCYVYYTSHGLNNYAPPS 419


>TC232114 similar to UP|Q8VZF5 (Q8VZF5) AT3g14400/MLN21_18, partial (26%)
          Length = 659

 Score = 27.7 bits (60), Expect = 0.98
 Identities = 15/35 (42%), Positives = 23/35 (64%), Gaps = 2/35 (5%)
 Frame = +2

Query: 3   RPISNLNEVAKNGME--ENGSMLAEKLQIGSRPPK 35
           RP+S+ N +A NG++   NGS  +E  ++G  PPK
Sbjct: 497 RPVSSSNSLASNGVKPHSNGSQTSECPKVGV-PPK 598


>TC215010 homologue to UP|Q94GV7 (Q94GV7) Cytoplasmic ribosomal protein L18,
           partial (18%)
          Length = 1180

 Score = 26.6 bits (57), Expect = 2.2
 Identities = 7/18 (38%), Positives = 12/18 (65%)
 Frame = +3

Query: 34  PKCERRCRSCVHCEAVQV 51
           P C+RRC  C H +++ +
Sbjct: 405 PSCKRRCAPCCHLQSIAI 458


>CD405056 
          Length = 653

 Score = 26.2 bits (56), Expect = 2.8
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 25  EKLQIGSRPPKCERRCRS-CVHCEAV 49
           +KL+  SRP  C R C + CV C+ V
Sbjct: 420 KKLEAHSRPNLCTRACGTCCVRCKCV 343


>BG352242 similar to GP|21539882|gb| transcription activator {Arabidopsis
          thaliana}, partial (8%)
          Length = 232

 Score = 26.2 bits (56), Expect = 2.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 40 CRSCVHCEAVQVPIVPSK 57
          C S +HC+ V  P+ P+K
Sbjct: 98 CSSSIHCDGVNGPLTPAK 45


>TC216023 similar to GB|AAM78036.1|21928015|AY125526 At2g01100/F23H14.7
           {Arabidopsis thaliana;} , partial (15%)
          Length = 1437

 Score = 26.2 bits (56), Expect = 2.8
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 63  SHYDSAAYSSRGDGLSNYKPISWKCKCGDY 92
           SHYDS  +  R +  S  K   W  +  DY
Sbjct: 420 SHYDSGDHEKRKEKSSKRKTKKWSSESSDY 509


>TC228715 similar to UP|APH1_ARATH (Q8L9G7) Gamma-secretase subunit
           APH1-like, partial (91%)
          Length = 1234

 Score = 25.4 bits (54), Expect = 4.9
 Identities = 14/65 (21%), Positives = 26/65 (39%)
 Frame = -2

Query: 28  QIGSRPPKCERRCRSCVHCEAVQVPIVPSKVQIHRSHYDSAAYSSRGDGLSNYKPISWKC 87
           Q     P    + + C   +        ++ QIH+SH+ S   +     L ++ P+    
Sbjct: 768 QFSPNHPPTMNQGQDCNQIKKRNANSTTARRQIHQSHHSSNNVNDGNKILIHFVPLCIPV 589

Query: 88  KCGDY 92
           KC D+
Sbjct: 588 KCDDH 574


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.318    0.134    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,473,386
Number of Sequences: 63676
Number of extensions: 75995
Number of successful extensions: 496
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of query: 95
length of database: 12,639,632
effective HSP length: 71
effective length of query: 24
effective length of database: 8,118,636
effective search space: 194847264
effective search space used: 194847264
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)