
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138015.15 + phase: 0 /pseudo
(821 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC211561 weakly similar to UP|O22675 (O22675) Reverse transcript... 54 3e-07
TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR ret... 42 8e-04
TC217081 homologue to UP|Q6Q2Z8 (Q6Q2Z8) Phosphoenolpyruvate car... 37 0.035
TC203962 homologue to UP|Q9LN13 (Q9LN13) T6D22.2, partial (18%) 34 0.30
TC231137 similar to UP|Q8S9K1 (Q8S9K1) At1g23880/T23E23_8, parti... 33 0.67
TC206706 similar to UP|Q9NJZ3 (Q9NJZ3) Fruitless type E, partial... 31 1.9
TC203792 weakly similar to UP|Q71LY7 (Q71LY7) Aldehyde dehydroge... 31 1.9
TC208583 Phosphoenolpyruvate carboxylase [Glycine max] 31 1.9
TC206673 31 1.9
TC216377 30 4.3
TC225901 similar to UP|Q9SGP6 (Q9SGP6) F3M18.8 (At1g28480), part... 30 5.6
TC206705 similar to UP|Q8MMZ5 (Q8MMZ5) CGMP-dependent protein ki... 30 5.6
TC227805 30 5.6
TC203345 weakly similar to UP|Q7X9I9 (Q7X9I9) Caffeic acid O-met... 30 5.6
TC205588 similar to UP|Q9FH57 (Q9FH57) GATA-binding transcriptio... 29 7.4
AI900269 29 9.6
CA936795 29 9.6
BI470652 similar to PIR|T17102|T171 RNA-directed DNA polymerase ... 29 9.6
>TC211561 weakly similar to UP|O22675 (O22675) Reverse transcriptase
(Fragment) , partial (59%)
Length = 1077
Score = 53.9 bits (128), Expect = 3e-07
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = +1
Query: 430 ILSHELVKSYSRKGISPRCMV-KIDLQKAYYSVE*PFINYLMLEMGFPCKFVN*AMACLT 488
++++E++ R S C+V K+D +KAY SV F+ Y+M M F K++ C+
Sbjct: 13 LIANEVIDEAKRSNKS--CLVFKVDYEKAYDSVSWNFLMYMMWRMDFSPKWIKWIEECVK 186
Query: 489 TTSYTYNVNGDLTRPFAAKKGLRQGD 514
+ S + VNG T F ++GLRQGD
Sbjct: 187 SASISVLVNGSPTAEFLPQRGLRQGD 264
>TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR retroelement
reverse transcriptase, partial (7%)
Length = 956
Score = 42.4 bits (98), Expect = 8e-04
Identities = 23/90 (25%), Positives = 47/90 (51%)
Frame = -3
Query: 425 IFDNIILSHELVKSYSRKGISPRCMVKIDLQKAYYSVE*PFINYLMLEMGFPCKFVN*AM 484
I D ++ E++ +K +KID+ KA+ +++ F+ ++ + G+ F N
Sbjct: 834 IKDCTCVTSEVINMLDKKVFGGNLALKIDIVKAFDTLDRDFLISVLNKFGYSHTFCNWIR 655
Query: 485 ACLTTTSYTYNVNGDLTRPFAAKKGLRQGD 514
L + + +VNG+ F+ ++G+RQGD
Sbjct: 654 VILLSAKLSISVNGEPVGFFSCQRGVRQGD 565
>TC217081 homologue to UP|Q6Q2Z8 (Q6Q2Z8) Phosphoenolpyruvate carboxylase ,
partial (42%)
Length = 1423
Score = 37.0 bits (84), Expect = 0.035
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = +2
Query: 796 YFDNEGYRCWQAKRWL 811
YFDNEGY CW AK WL
Sbjct: 1178 YFDNEGYCCWHAKHWL 1225
>TC203962 homologue to UP|Q9LN13 (Q9LN13) T6D22.2, partial (18%)
Length = 695
Score = 33.9 bits (76), Expect = 0.30
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 21/126 (16%)
Frame = +1
Query: 243 ISLSSS*QKMAPKLTSITSSRRRLEGSI*N*WVVLLIR----YLWWTKISSREVLCYLSI 298
++L SS + P+LT R R + * + +++R LWW+K+S +L +
Sbjct: 211 LTLPSSLPNL*PRLTGDLVRRLRRSPNS*KMEMQVMLR*FPPSLWWSKLSPSILLLVVLP 390
Query: 299 SKTC----CAQSSQPWRSKMRYSP-------------WILLRLQVLMVTVFVSLNALGTL 341
TC +SS+ WR + + P ++ L++ ++VT V+ N+ G+L
Sbjct: 391 *GTCDKLWLLESSRVWRRRTQLEPRSPRLHRRRSEYIFVFLQVHAIIVTFIVTHNS-GSL 567
Query: 342 LVIVSL 347
LV L
Sbjct: 568 LVFYFL 585
>TC231137 similar to UP|Q8S9K1 (Q8S9K1) At1g23880/T23E23_8, partial (17%)
Length = 623
Score = 32.7 bits (73), Expect = 0.67
Identities = 15/26 (57%), Positives = 18/26 (68%)
Frame = +3
Query: 718 VFHPLLHLSKRLSVTIIFLSHSTCID 743
+F LLHLS L+VT IFL + CID
Sbjct: 495 IFTSLLHLSDNLNVTNIFLHYQLCID 572
>TC206706 similar to UP|Q9NJZ3 (Q9NJZ3) Fruitless type E, partial (4%)
Length = 884
Score = 31.2 bits (69), Expect = 1.9
Identities = 17/46 (36%), Positives = 26/46 (55%), Gaps = 3/46 (6%)
Frame = -3
Query: 553 FMCVLLMI---CCCFLEVMWILSLSFLKLLACLVLLLALKLIKLRA 595
F+ +LL + CCCF L F+ LL CLVLL+ +++ + A
Sbjct: 516 FLLLLLFVLCCCCCFF-------LKFVVLLCCLVLLVVFEVVLVDA 400
>TC203792 weakly similar to UP|Q71LY7 (Q71LY7) Aldehyde dehydrogenase,
partial (31%)
Length = 897
Score = 31.2 bits (69), Expect = 1.9
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = +1
Query: 315 RYSPWILLRLQVLMVTVFVSLNALGTLLVIVSLMLY*NSLRLVSCL 360
RY PW L +LQ+L V+ + + LG LLV++ L + L SCL
Sbjct: 646 RYPPWTLNKLQLLEVS--YNYDYLGLLLVLLGLKRPSKRVNLRSCL 777
>TC208583 Phosphoenolpyruvate carboxylase [Glycine max]
Length = 1339
Score = 31.2 bits (69), Expect = 1.9
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +1
Query: 796 YFDNEGYRCWQAK 808
YFDNEGY CW AK
Sbjct: 1105 YFDNEGYCCWHAK 1143
>TC206673
Length = 742
Score = 31.2 bits (69), Expect = 1.9
Identities = 18/66 (27%), Positives = 35/66 (52%)
Frame = +3
Query: 166 KKVEDARTALVDVQRQLSSDPMNLDLIEAEKVCLSSLKKWSTIEEQIWI*KSRANWIQLG 225
K + + + L +V+ S+ +++D I+A+K L + ST E + KSR W++ G
Sbjct: 15 KGIHNIKKKLNEVEDLASNRSLSVDEIKAKKELQQQLWEASTAYESLLRQKSRDKWLKEG 194
Query: 226 DSTQNF 231
D+ +
Sbjct: 195 DNNSAY 212
>TC216377
Length = 2020
Score = 30.0 bits (66), Expect = 4.3
Identities = 11/27 (40%), Positives = 18/27 (65%)
Frame = +2
Query: 187 MNLDLIEAEKVCLSSLKKWSTIEEQIW 213
+N +L E+ KVCLS L W+ + ++W
Sbjct: 1196 LNPNLYESGKVCLSLLNTWTGTDTEVW 1276
>TC225901 similar to UP|Q9SGP6 (Q9SGP6) F3M18.8 (At1g28480), partial (53%)
Length = 828
Score = 29.6 bits (65), Expect = 5.6
Identities = 13/46 (28%), Positives = 24/46 (51%)
Frame = -2
Query: 297 SISKTCCAQSSQPWRSKMRYSPWILLRLQVLMVTVFVSLNALGTLL 342
S+S T C P S R++ W++ + ++ + +S LGT+L
Sbjct: 431 SLSSTSCTAGFTPRPSSNRFTTWLMQQPRLAKTIIALSKTMLGTIL 294
>TC206705 similar to UP|Q8MMZ5 (Q8MMZ5) CGMP-dependent protein kinase,
partial (3%)
Length = 1324
Score = 29.6 bits (65), Expect = 5.6
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 7/39 (17%)
Frame = -2
Query: 562 CCFLEVMWILSLSFLK-------LLACLVLLLALKLIKL 593
CCFL ++++L FLK LL CLVLL+ + + ++
Sbjct: 522 CCFLLLLFVLCCFFLKFVVVAVVLLCCLVLLVVVVVFEV 406
>TC227805
Length = 1849
Score = 29.6 bits (65), Expect = 5.6
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 187 MNLDLIEAEKVCLSSLKKWSTIEEQIW 213
+N +L E+ K+CLS L W+ + ++W
Sbjct: 1067 LNPNLYESGKICLSLLNTWTGTDTEVW 1147
>TC203345 weakly similar to UP|Q7X9I9 (Q7X9I9) Caffeic acid
O-methyltransferase, partial (48%)
Length = 784
Score = 29.6 bits (65), Expect = 5.6
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Frame = +3
Query: 553 FMCVLLMICCCF-------LEVMWILSLSFLKLLACLVLLLALKLIKLRAQFIWEVY 602
FMCV+L CC+ L VMW S L L L + K Q IW +Y
Sbjct: 567 FMCVVLCCMCCYYY*QLCDLRVMWFSS------LPVLCLCIK*KYEAPHHQVIWVIY 719
>TC205588 similar to UP|Q9FH57 (Q9FH57) GATA-binding transcription
factor-like protein (At5g66320), partial (25%)
Length = 1084
Score = 29.3 bits (64), Expect = 7.4
Identities = 17/46 (36%), Positives = 24/46 (51%), Gaps = 1/46 (2%)
Frame = -1
Query: 157 NSTHFQGTTKKVEDARTALVDVQRQL-SSDPMNLDLIEAEKVCLSS 201
N GT VE + + V+ +L SS P + D EA+K+C SS
Sbjct: 190 NGERVTGTANSVEKSES*ETPVELELLSSSPRSCDCDEADKLCFSS 53
>AI900269
Length = 292
Score = 28.9 bits (63), Expect = 9.6
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 19/75 (25%)
Frame = +3
Query: 85 FLKEYLITVLYVWICLVLLLQR----ILLSYLLMY*LTII---------------FFPSL 125
FLK +I Y +C V +LQ + L + T++ FFP+
Sbjct: 21 FLKVLIIV*YYPLLCGVHILQSPK*LLTADSFLFFYSTVLGDT*MVS*PKRKFVPFFPTF 200
Query: 126 IQEK*GQNLHTNLLT 140
+QE Q +HTN++T
Sbjct: 201 LQEVSSQQIHTNMMT 245
>CA936795
Length = 449
Score = 28.9 bits (63), Expect = 9.6
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +2
Query: 554 MCVLLMICCCFLEVMWI---LSLSFLKLLACLVLLLALKLIKLRAQFIWEVYPRAFKIL 609
+CV +CC L V+W+ + +SF+ + LL+ + L + +F VY KI+
Sbjct: 200 LCVHAHVCCFNLSVVWLVVFIKVSFIAPFFWISLLVPISLFHNKLKFEALVYIAISKIV 376
>BI470652 similar to PIR|T17102|T171 RNA-directed DNA polymerase (EC
2.7.7.49) (clone AmLi2) - garden snapdragon (fragment),
partial (22%)
Length = 111
Score = 28.9 bits (63), Expect = 9.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 486 CLTTTSYTYNVNGDLTRPFAAKKGLRQG 513
CL++ S + VNG T F +GLRQG
Sbjct: 7 CLSSASISILVNGSPTEEFKPXRGLRQG 90
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.348 0.153 0.523
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,635,854
Number of Sequences: 63676
Number of extensions: 731223
Number of successful extensions: 8768
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 6498
Number of HSP's successfully gapped in prelim test: 269
Number of HSP's that attempted gapping in prelim test: 2027
Number of HSP's gapped (non-prelim): 7095
length of query: 821
length of database: 12,639,632
effective HSP length: 105
effective length of query: 716
effective length of database: 5,953,652
effective search space: 4262814832
effective search space used: 4262814832
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 63 (28.9 bits)
Medicago: description of AC138015.15