Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC138015.15 + phase: 0 /pseudo
         (821 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC211561 weakly similar to UP|O22675 (O22675) Reverse transcript...    54  3e-07
TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR ret...    42  8e-04
TC217081 homologue to UP|Q6Q2Z8 (Q6Q2Z8) Phosphoenolpyruvate car...    37  0.035
TC203962 homologue to UP|Q9LN13 (Q9LN13) T6D22.2, partial (18%)        34  0.30
TC231137 similar to UP|Q8S9K1 (Q8S9K1) At1g23880/T23E23_8, parti...    33  0.67
TC206706 similar to UP|Q9NJZ3 (Q9NJZ3) Fruitless type E, partial...    31  1.9
TC203792 weakly similar to UP|Q71LY7 (Q71LY7) Aldehyde dehydroge...    31  1.9
TC208583 Phosphoenolpyruvate carboxylase [Glycine max]                 31  1.9
TC206673                                                               31  1.9
TC216377                                                               30  4.3
TC225901 similar to UP|Q9SGP6 (Q9SGP6) F3M18.8 (At1g28480), part...    30  5.6
TC206705 similar to UP|Q8MMZ5 (Q8MMZ5) CGMP-dependent protein ki...    30  5.6
TC227805                                                               30  5.6
TC203345 weakly similar to UP|Q7X9I9 (Q7X9I9) Caffeic acid O-met...    30  5.6
TC205588 similar to UP|Q9FH57 (Q9FH57) GATA-binding transcriptio...    29  7.4
AI900269                                                               29  9.6
CA936795                                                               29  9.6
BI470652 similar to PIR|T17102|T171 RNA-directed DNA polymerase ...    29  9.6

>TC211561 weakly similar to UP|O22675 (O22675) Reverse transcriptase
           (Fragment) , partial (59%)
          Length = 1077

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
 Frame = +1

Query: 430 ILSHELVKSYSRKGISPRCMV-KIDLQKAYYSVE*PFINYLMLEMGFPCKFVN*AMACLT 488
           ++++E++    R   S  C+V K+D +KAY SV   F+ Y+M  M F  K++     C+ 
Sbjct: 13  LIANEVIDEAKRSNKS--CLVFKVDYEKAYDSVSWNFLMYMMWRMDFSPKWIKWIEECVK 186

Query: 489 TTSYTYNVNGDLTRPFAAKKGLRQGD 514
           + S +  VNG  T  F  ++GLRQGD
Sbjct: 187 SASISVLVNGSPTAEFLPQRGLRQGD 264


>TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR retroelement
           reverse transcriptase, partial (7%)
          Length = 956

 Score = 42.4 bits (98), Expect = 8e-04
 Identities = 23/90 (25%), Positives = 47/90 (51%)
 Frame = -3

Query: 425 IFDNIILSHELVKSYSRKGISPRCMVKIDLQKAYYSVE*PFINYLMLEMGFPCKFVN*AM 484
           I D   ++ E++    +K       +KID+ KA+ +++  F+  ++ + G+   F N   
Sbjct: 834 IKDCTCVTSEVINMLDKKVFGGNLALKIDIVKAFDTLDRDFLISVLNKFGYSHTFCNWIR 655

Query: 485 ACLTTTSYTYNVNGDLTRPFAAKKGLRQGD 514
             L +   + +VNG+    F+ ++G+RQGD
Sbjct: 654 VILLSAKLSISVNGEPVGFFSCQRGVRQGD 565


>TC217081 homologue to UP|Q6Q2Z8 (Q6Q2Z8) Phosphoenolpyruvate carboxylase  ,
            partial (42%)
          Length = 1423

 Score = 37.0 bits (84), Expect = 0.035
 Identities = 13/16 (81%), Positives = 13/16 (81%)
 Frame = +2

Query: 796  YFDNEGYRCWQAKRWL 811
            YFDNEGY CW AK WL
Sbjct: 1178 YFDNEGYCCWHAKHWL 1225


>TC203962 homologue to UP|Q9LN13 (Q9LN13) T6D22.2, partial (18%)
          Length = 695

 Score = 33.9 bits (76), Expect = 0.30
 Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 21/126 (16%)
 Frame = +1

Query: 243 ISLSSS*QKMAPKLTSITSSRRRLEGSI*N*WVVLLIR----YLWWTKISSREVLCYLSI 298
           ++L SS   + P+LT     R R   + *   + +++R     LWW+K+S   +L  +  
Sbjct: 211 LTLPSSLPNL*PRLTGDLVRRLRRSPNS*KMEMQVMLR*FPPSLWWSKLSPSILLLVVLP 390

Query: 299 SKTC----CAQSSQPWRSKMRYSP-------------WILLRLQVLMVTVFVSLNALGTL 341
             TC      +SS+ WR + +  P             ++ L++  ++VT  V+ N+ G+L
Sbjct: 391 *GTCDKLWLLESSRVWRRRTQLEPRSPRLHRRRSEYIFVFLQVHAIIVTFIVTHNS-GSL 567

Query: 342 LVIVSL 347
           LV   L
Sbjct: 568 LVFYFL 585


>TC231137 similar to UP|Q8S9K1 (Q8S9K1) At1g23880/T23E23_8, partial (17%)
          Length = 623

 Score = 32.7 bits (73), Expect = 0.67
 Identities = 15/26 (57%), Positives = 18/26 (68%)
 Frame = +3

Query: 718 VFHPLLHLSKRLSVTIIFLSHSTCID 743
           +F  LLHLS  L+VT IFL +  CID
Sbjct: 495 IFTSLLHLSDNLNVTNIFLHYQLCID 572


>TC206706 similar to UP|Q9NJZ3 (Q9NJZ3) Fruitless type E, partial (4%)
          Length = 884

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 17/46 (36%), Positives = 26/46 (55%), Gaps = 3/46 (6%)
 Frame = -3

Query: 553 FMCVLLMI---CCCFLEVMWILSLSFLKLLACLVLLLALKLIKLRA 595
           F+ +LL +   CCCF        L F+ LL CLVLL+  +++ + A
Sbjct: 516 FLLLLLFVLCCCCCFF-------LKFVVLLCCLVLLVVFEVVLVDA 400


>TC203792 weakly similar to UP|Q71LY7 (Q71LY7) Aldehyde dehydrogenase,
           partial (31%)
          Length = 897

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = +1

Query: 315 RYSPWILLRLQVLMVTVFVSLNALGTLLVIVSLMLY*NSLRLVSCL 360
           RY PW L +LQ+L V+   + + LG LLV++ L      + L SCL
Sbjct: 646 RYPPWTLNKLQLLEVS--YNYDYLGLLLVLLGLKRPSKRVNLRSCL 777


>TC208583 Phosphoenolpyruvate carboxylase [Glycine max]
          Length = 1339

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = +1

Query: 796  YFDNEGYRCWQAK 808
            YFDNEGY CW AK
Sbjct: 1105 YFDNEGYCCWHAK 1143


>TC206673 
          Length = 742

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 18/66 (27%), Positives = 35/66 (52%)
 Frame = +3

Query: 166 KKVEDARTALVDVQRQLSSDPMNLDLIEAEKVCLSSLKKWSTIEEQIWI*KSRANWIQLG 225
           K + + +  L +V+   S+  +++D I+A+K     L + ST  E +   KSR  W++ G
Sbjct: 15  KGIHNIKKKLNEVEDLASNRSLSVDEIKAKKELQQQLWEASTAYESLLRQKSRDKWLKEG 194

Query: 226 DSTQNF 231
           D+   +
Sbjct: 195 DNNSAY 212


>TC216377 
          Length = 2020

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 11/27 (40%), Positives = 18/27 (65%)
 Frame = +2

Query: 187  MNLDLIEAEKVCLSSLKKWSTIEEQIW 213
            +N +L E+ KVCLS L  W+  + ++W
Sbjct: 1196 LNPNLYESGKVCLSLLNTWTGTDTEVW 1276


>TC225901 similar to UP|Q9SGP6 (Q9SGP6) F3M18.8 (At1g28480), partial (53%)
          Length = 828

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 13/46 (28%), Positives = 24/46 (51%)
 Frame = -2

Query: 297 SISKTCCAQSSQPWRSKMRYSPWILLRLQVLMVTVFVSLNALGTLL 342
           S+S T C     P  S  R++ W++ + ++    + +S   LGT+L
Sbjct: 431 SLSSTSCTAGFTPRPSSNRFTTWLMQQPRLAKTIIALSKTMLGTIL 294


>TC206705 similar to UP|Q8MMZ5 (Q8MMZ5) CGMP-dependent protein kinase,
           partial (3%)
          Length = 1324

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 7/39 (17%)
 Frame = -2

Query: 562 CCFLEVMWILSLSFLK-------LLACLVLLLALKLIKL 593
           CCFL ++++L   FLK       LL CLVLL+ + + ++
Sbjct: 522 CCFLLLLFVLCCFFLKFVVVAVVLLCCLVLLVVVVVFEV 406


>TC227805 
          Length = 1849

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 187  MNLDLIEAEKVCLSSLKKWSTIEEQIW 213
            +N +L E+ K+CLS L  W+  + ++W
Sbjct: 1067 LNPNLYESGKICLSLLNTWTGTDTEVW 1147


>TC203345 weakly similar to UP|Q7X9I9 (Q7X9I9) Caffeic acid
           O-methyltransferase, partial (48%)
          Length = 784

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
 Frame = +3

Query: 553 FMCVLLMICCCF-------LEVMWILSLSFLKLLACLVLLLALKLIKLRAQFIWEVY 602
           FMCV+L   CC+       L VMW  S      L  L L +  K      Q IW +Y
Sbjct: 567 FMCVVLCCMCCYYY*QLCDLRVMWFSS------LPVLCLCIK*KYEAPHHQVIWVIY 719


>TC205588 similar to UP|Q9FH57 (Q9FH57) GATA-binding transcription
           factor-like protein (At5g66320), partial (25%)
          Length = 1084

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 17/46 (36%), Positives = 24/46 (51%), Gaps = 1/46 (2%)
 Frame = -1

Query: 157 NSTHFQGTTKKVEDARTALVDVQRQL-SSDPMNLDLIEAEKVCLSS 201
           N     GT   VE + +    V+ +L SS P + D  EA+K+C SS
Sbjct: 190 NGERVTGTANSVEKSES*ETPVELELLSSSPRSCDCDEADKLCFSS 53


>AI900269 
          Length = 292

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 19/75 (25%)
 Frame = +3

Query: 85  FLKEYLITVLYVWICLVLLLQR----ILLSYLLMY*LTII---------------FFPSL 125
           FLK  +I   Y  +C V +LQ     +     L +  T++               FFP+ 
Sbjct: 21  FLKVLIIV*YYPLLCGVHILQSPK*LLTADSFLFFYSTVLGDT*MVS*PKRKFVPFFPTF 200

Query: 126 IQEK*GQNLHTNLLT 140
           +QE   Q +HTN++T
Sbjct: 201 LQEVSSQQIHTNMMT 245


>CA936795 
          Length = 449

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +2

Query: 554 MCVLLMICCCFLEVMWI---LSLSFLKLLACLVLLLALKLIKLRAQFIWEVYPRAFKIL 609
           +CV   +CC  L V+W+   + +SF+     + LL+ + L   + +F   VY    KI+
Sbjct: 200 LCVHAHVCCFNLSVVWLVVFIKVSFIAPFFWISLLVPISLFHNKLKFEALVYIAISKIV 376


>BI470652 similar to PIR|T17102|T171 RNA-directed DNA polymerase (EC
           2.7.7.49) (clone AmLi2) - garden snapdragon (fragment),
           partial (22%)
          Length = 111

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 486 CLTTTSYTYNVNGDLTRPFAAKKGLRQG 513
           CL++ S +  VNG  T  F   +GLRQG
Sbjct: 7   CLSSASISILVNGSPTEEFKPXRGLRQG 90


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.348    0.153    0.523 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,635,854
Number of Sequences: 63676
Number of extensions: 731223
Number of successful extensions: 8768
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 6498
Number of HSP's successfully gapped in prelim test: 269
Number of HSP's that attempted gapping in prelim test: 2027
Number of HSP's gapped (non-prelim): 7095
length of query: 821
length of database: 12,639,632
effective HSP length: 105
effective length of query: 716
effective length of database: 5,953,652
effective search space: 4262814832
effective search space used: 4262814832
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 63 (28.9 bits)


Medicago: description of AC138015.15