BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137996.10 + phase: 0 /pseudo
(1594 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 925 0.0
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 923 0.0
TC232995 224 2e-58
TC211311 weakly similar to UP|O24587 (O24587) Pol protein, parti... 220 3e-57
TC213445 123 2e-48
BM143109 167 3e-41
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 167 3e-41
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 155 2e-37
CO983516 154 4e-37
AI966222 117 5e-32
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 128 2e-29
CO982036 124 3e-28
BG508993 120 5e-27
BU548243 117 3e-26
TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%) 117 5e-26
BU549979 116 7e-26
BI321712 116 9e-26
BI425121 114 4e-25
TC232593 weakly similar to UP|Q9XG91 (Q9XG91) Tpv2-1c protein (F... 113 6e-25
AI959950 107 3e-23
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 925 bits (2390), Expect = 0.0
Identities = 482/1050 (45%), Positives = 653/1050 (61%), Gaps = 1/1050 (0%)
Frame = +1
Query: 546 LRAREKQRSWYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTIGNSSI- 604
LRA K+ WYLDSGCSRHMTG K + + V FG GKI G G + + +
Sbjct: 1663 LRASAKE-DWYLDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKLVHDGLP 1839
Query: 605 SINNVWLVDGLKHNLLSISQFCDNGYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINF 664
S+N V LV GL NL+SISQ CD G++V F+K+ C LV + + KG R ++ +
Sbjct: 1840 SLNKVLLVKGLTANLISISQLCDEGFNVNFTKSEC-LVTNEKSEVLMKGSRSKDNCYLWT 2016
Query: 665 SDLADQKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQ 724
CL S D+ +WH+R GH + R + KI V+G+PN+ +CG CQ
Sbjct: 2017 PQETSYSSTCLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQ 2196
Query: 725 KGKIVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIK 784
GK VK S + +TSR LELLH+DL GP+ SL G +Y V+VDD+SR+TWV FI+
Sbjct: 2197 IGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIR 2376
Query: 785 SKDYACEVFSSFCTQIQSEKELKILKVRSDYGGEFENEPFELFCEKHGILHEFSSPRTPQ 844
K EVF ++Q EK+ I ++RSD+G EFEN F FC GI HEFS+ TPQ
Sbjct: 2377 EKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAITPQ 2556
Query: 845 QNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTTYELFKG 904
QNG+VERKNRTLQE AR M+H L + WAEA+NT+CYI NR+ +R T YE++KG
Sbjct: 2557 QNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKG 2736
Query: 905 RRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESM 964
R+P + +FH FG CYIL ++ +K D K+ GIFLGYS S+AYRV+NS T+ V ES+
Sbjct: 2737 RKPTVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESI 2916
Query: 965 HVKFDDREPGSKTSEQSESNAGTTDSEDASESDQPSDSEKYTEVESSPEAEYNSEAEPSP 1024
+V DD P K +D E + S +S+ AE + A P
Sbjct: 2917 NVVVDDLTPARK--------------KDVEEDVRTSGDNVADTAKSAENAENSDSATDEP 3054
Query: 1025 KVQNESASEDFQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEESLIGLLSI 1084
+ +P + + HP+ELIIG + TRS + S +S
Sbjct: 3055 NINQPDK------------RPSIRIQKMHPKELIIGDPNRGVTTRSREIEIVSNSCFVSK 3198
Query: 1085 IEPKTVEEALSDDGWILAMQEELINFKGMMCGIWYPYPFRRTLLEQNGYSKTS*MNKEK* 1144
IEPK V+EAL+D+ WI AMQEEL FK P P ++ K +
Sbjct: 3199 IEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVI 3378
Query: 1145 PETKPDFVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGV 1204
K VAQGY+Q EG+D+ ETFAPVARLE+IRLLL A LYQMDVKSAFLNG
Sbjct: 3379 TRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGY 3558
Query: 1205 IEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTT 1264
+ EE YV+QP GF D HPDHVY+LKK+LYGLKQAPRAWY+RL+ FL + + +G +D T
Sbjct: 3559 LNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKT 3738
Query: 1265 LFRRTLKKDILIVQIYVDDIIFGSTNASLCK*FSKLMQDEFEMSMMGELKFFLGIQINQS 1324
LF + ++++I QIYVDDI+FG + + + F + MQ EFEMS++GEL +FLG+Q+ Q
Sbjct: 3739 LFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQM 3918
Query: 1325 KEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLY 1384
++ +++ Q+KY K ++KKF +E+ TP LSK++ GT VDQ LYR MIGSLLY
Sbjct: 3919 EDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLY 4098
Query: 1385 LTASRPAILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCD 1444
LTASRP I ++V +CAR+Q++P+ SHL VKRI +Y+ GT++ G++Y D L+G+CD
Sbjct: 4099 LTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSDSMLVGYCD 4278
Query: 1445 ADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQ 1504
AD+AG +RKSTSG C +LG NLISW SK+Q +++STAEAEYI+A S C+QL+WMK
Sbjct: 4279 ADWAGSADDRKSTSGGCFYLGTNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQM 4458
Query: 1505 LEDYQINANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGILDIQFIDIE 1564
L++Y + + + +YCDN +AI +SKNP+ HSR KHI+I+HH+IRD V ++ ++ +D E
Sbjct: 4459 LKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLEHVDTE 4638
Query: 1565 HQWADIFTKPLSVERFDFIKKNLNMHFVSD 1594
Q ADIFTK L +F+ ++ L + + D
Sbjct: 4639 EQIADIFTKALDANQFEKLRGKLGICLLED 4728
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 923 bits (2386), Expect = 0.0
Identities = 480/1045 (45%), Positives = 656/1045 (61%), Gaps = 1/1045 (0%)
Frame = +1
Query: 546 LRAREKQRSWYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTIGNSSI- 604
LRA K+ WYLDSGCSRHMTG K L + V FG GKIIG G + + +
Sbjct: 1660 LRASAKE-DWYLDSGCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKIIGMGKLVHDGLP 1836
Query: 605 SINNVWLVDGLKHNLLSISQFCDNGYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINF 664
S+N V LV GL NL+SISQ CD G++V F+K+ C LV + + KG R ++ +
Sbjct: 1837 SLNKVLLVKGLTANLISISQLCDEGFNVNFTKSEC-LVTNEKSEVLMKGSRSKDNCYLWT 2013
Query: 665 SDLADQKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQ 724
CL S D+ +WH+R GH + R + KI V+G+PN+ +CG CQ
Sbjct: 2014 PQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQ 2193
Query: 725 KGKIVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIK 784
GK VK S + +TSR LELLH+DL GP+ SL G +Y V+VDD+SR+TWV FI+
Sbjct: 2194 IGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIR 2373
Query: 785 SKDYACEVFSSFCTQIQSEKELKILKVRSDYGGEFENEPFELFCEKHGILHEFSSPRTPQ 844
K EVF ++Q EK+ I ++RSD+G EFEN F FC GI HEFS+ TPQ
Sbjct: 2374 EKSETFEVFKELSLRLQREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAAITPQ 2553
Query: 845 QNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTTYELFKG 904
QNG+VERKNRTLQE AR M+H L + WAEA+NT+CYI NR+ +R T YE++KG
Sbjct: 2554 QNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKG 2733
Query: 905 RRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESM 964
R+P++ +FH FG CYIL ++ +K D K+ GIFLGYS S+AYRV+NS T+ V ES+
Sbjct: 2734 RKPSVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESI 2913
Query: 965 HVKFDDREPGSKTSEQSESNAGTTDSEDASESDQPSDSEKYTEVESSPEAEYNSEAEPSP 1024
+V DD P K + + + DA++S +
Sbjct: 2914 NVVVDDLSPARKKDVEEDVRTSGDNVADAAKSGE-------------------------- 3015
Query: 1025 KVQNESASEDFQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEESLIGLLSI 1084
+N ++ D + Q + + + HP+ELIIG + TRS + S +S
Sbjct: 3016 NAENSDSATDESNINQPDKRSSTRIQKMHPKELIIGDPNRGVTTRSREVEIVSNSCFVSK 3195
Query: 1085 IEPKTVEEALSDDGWILAMQEELINFKGMMCGIWYPYPFRRTLLEQNGYSKTS*MNKEK* 1144
IEPK V+EAL+D+ WI AMQEEL FK P P ++ K +
Sbjct: 3196 IEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVI 3375
Query: 1145 PETKPDFVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGV 1204
K VAQGY+Q EG+D+ ETFAPVARLE+IRLLL A LYQMDVKSAFLNG
Sbjct: 3376 TRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGY 3555
Query: 1205 IEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTT 1264
+ EEVYV+QP GF D HPDHVY+LKK+LYGLKQAPRAWY+RL+ FL + + +G +D T
Sbjct: 3556 LNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKT 3735
Query: 1265 LFRRTLKKDILIVQIYVDDIIFGSTNASLCK*FSKLMQDEFEMSMMGELKFFLGIQINQS 1324
LF + ++++I QIYVDDI+FG + + + F + MQ EFEMS++GEL +FLG+Q+ Q
Sbjct: 3736 LFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQM 3915
Query: 1325 KEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLY 1384
++ +++ Q++Y K ++KKF +E+ TP LSK++ GT VDQ LYR MIGSLLY
Sbjct: 3916 EDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLY 4095
Query: 1385 LTASRPAILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCD 1444
LTASRP I ++V +CAR+Q++P+ SHLT VKRI +Y+ GT++ G++Y + L+G+CD
Sbjct: 4096 LTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMYCHCSNPMLVGYCD 4275
Query: 1445 ADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQ 1504
AD+AG +RKSTSG C +LG NLISW SK+Q +++STAEAEYI+A S C+QL+WMK
Sbjct: 4276 ADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQM 4455
Query: 1505 LEDYQINANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGILDIQFIDIE 1564
L++Y + + + +YCDN +AI +SKNP+ HSR KHI+I+HH+IRD V ++ ++ +D E
Sbjct: 4456 LKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLKHVDTE 4635
Query: 1565 HQWADIFTKPLSVERFDFIKKNLNM 1589
Q ADIFTK L +F+ ++ L +
Sbjct: 4636 EQIADIFTKALDANQFEKLRGKLGI 4710
>TC232995
Length = 1009
Score = 224 bits (572), Expect = 2e-58
Identities = 107/173 (61%), Positives = 138/173 (78%)
Frame = +2
Query: 1211 VKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTL 1270
V+QPPGFE P+HVYKL+K+LYGLKQAPRAWY+RLSNFL++ +F RG+VDTTLF +
Sbjct: 2 VEQPPGFEISDKPNHVYKLQKALYGLKQAPRAWYERLSNFLLEKEFSRGKVDTTLFIKRK 181
Query: 1271 KKDILIVQIYVDDIIFGSTNASLCK*FSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYV 1330
DIL+VQIYVDDIIFGSTN SLCK FS MQ EFEMSMMGELK+FLG+QI Q++ G+++
Sbjct: 182 HNDILLVQIYVDDIIFGSTNDSLCKEFSLDMQSEFEMSMMGELKYFLGLQIKQTQ*GIFI 361
Query: 1331 HQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLL 1383
+Q+KY KEL+K+F ++ K M+TPM C L K+++G +D K YR IG ++
Sbjct: 362 NQSKYCKELIKRFGMDSAKHMSTPMSTNCYLDKDESGQSIDIKQYRDAIGEVV 520
>TC211311 weakly similar to UP|O24587 (O24587) Pol protein, partial (15%)
Length = 1213
Score = 220 bits (561), Expect = 3e-57
Identities = 119/245 (48%), Positives = 157/245 (63%)
Frame = +3
Query: 1216 GFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDIL 1275
GFED + P HV+ + L L +F + D R K+ L
Sbjct: 330 GFEDKERPCHVFMV*NKL*ELGMKG*V------HF*FQMDSPEE*RTPHYSERLKKETFL 491
Query: 1276 IVQIYVDDIIFGSTNASLCK*FSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKY 1335
I+ IYVDDIIFG+T+ +CK F +LM+D FE SM GELKF LG+QI Q G+++HQ KY
Sbjct: 492 IIHIYVDDIIFGATSKRMCKEFFELMKDGFETSMKGELKFLLGLQIIQKVYGIFIHQEKY 671
Query: 1336 TKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPAILFS 1395
TK LK+F++++ K M TPMH + + K++ G K Y GMI SL YLT+SRP I+F
Sbjct: 672 TKSHLKRFRMDEAKPMATPMHRSTIIDKDEKGNHTS*KEYSGMIDSLSYLTSSRPDIVFV 851
Query: 1396 VCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERK 1455
VCLCARFQS P+ SH+TAVKRI RYL GTTN L ++K ++ L+G+CD +AGD++ERK
Sbjct: 852 VCLCARFQSYPKISHVTAVKRILRYLVGTTNHCLWFKKRSEFDLLGYCDVYFAGDKVERK 1031
Query: 1456 STSGN 1460
STS N
Sbjct: 1032 STSRN 1046
>TC213445
Length = 705
Score = 123 bits (308), Expect(2) = 2e-48
Identities = 57/98 (58%), Positives = 74/98 (75%)
Frame = +1
Query: 1451 RIERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQLEDYQI 1510
+ +R+STS C F+G L+SW SK+Q ++ +STAEAEYISA S Q+ WM+ QL DY +
Sbjct: 400 KTDRESTSDTCHFIGSALVSWHSKKQNSVVLSTAEAEYISARSYYAQIFWMRQQLFDYGL 579
Query: 1511 NANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIR 1548
+ IPI CDNT+AI LSKN IL+SR KHIEI+HHF+R
Sbjct: 580 KLDHIPIRCDNTSAINLSKNHILYSRTKHIEIRHHFLR 693
Score = 89.7 bits (221), Expect(2) = 2e-48
Identities = 40/68 (58%), Positives = 52/68 (75%)
Frame = +2
Query: 1378 MIGSLLYLTASRPAILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDY 1437
MI S LYL+ SRP I+FSVC+C R+Q++P+ESHL+ +KRI RYL G NLGL Y K+ Y
Sbjct: 197 MIESFLYLSTSRPHIMFSVCMCVRYQANPKESHLSVIKRIMRYLLGIINLGLWYPKNSSY 376
Query: 1438 KLIGFCDA 1445
L+G+ DA
Sbjct: 377 NLVGYSDA 400
>BM143109
Length = 415
Score = 167 bits (424), Expect = 3e-41
Identities = 83/137 (60%), Positives = 106/137 (76%)
Frame = +1
Query: 1213 QPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKK 1272
QPP ++ + P+HV+KLKK LYGLKQA RAWY+ LS FL+ F +G+VDT LF
Sbjct: 4 QPPVRKNSEKPNHVFKLKKVLYGLKQALRAWYELLSKFLLDKGFSKGKVDTNLFI*KKLN 183
Query: 1273 DILIVQIYVDDIIFGSTNASLCK*FSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQ 1332
DIL+VQIYVDDIIFGSTN SLCK FS+ MQ+EFEMSMM EL FFLG+QI Q+K G+++ Q
Sbjct: 184 DILLVQIYVDDIIFGSTNDSLCKKFSQDMQNEFEMSMMRELNFFLGLQIKQTKNGIFISQ 363
Query: 1333 TKYTKELLKKFKLEDCK 1349
+KY K+L+ +F +E+ K
Sbjct: 364 SKYCKDLIHRFGMENDK 414
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
(7%)
Length = 804
Score = 167 bits (424), Expect = 3e-41
Identities = 92/222 (41%), Positives = 135/222 (60%), Gaps = 4/222 (1%)
Frame = +1
Query: 1370 VDQKLYRGMIGSLLYLTASRPAILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGL 1429
VD +R +IGSL YL SRP I F+V L +RF PR SH+ A KR+ R +KGT G+
Sbjct: 7 VDVTEFRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGV 186
Query: 1430 LY---RKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEA 1486
L+ KS L+G+ D+D+ D + KST G + ++ +SK+Q IA+ST EA
Sbjct: 187 LFPFKAKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEA 366
Query: 1487 EYISAASCCTQLLWMKHQLEDYQINANS-IPIYCDNTAAICLSKNPILHSRAKHIEIKHH 1545
EY++A+ Q +WM + LE+ ++ + + DN +AI L+K+P LH R+KHIE++ H
Sbjct: 367 EYVAASLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFH 546
Query: 1546 FIRDYVQKGILDIQFIDIEHQWADIFTKPLSVERFDFIKKNL 1587
+IRD V KG + +++ E Q AD+ TKP+ V RF I L
Sbjct: 547 YIRDQVSKGNVTVEYCKAEEQLADLMTKPIQVSRFKQICSEL 672
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 155 bits (391), Expect = 2e-37
Identities = 74/106 (69%), Positives = 89/106 (83%)
Frame = -3
Query: 1148 KPDFVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEE 1207
K VA+GY+Q+EGIDY ET+APVARLE IR+LL+Y LYQMDVKSAFLNG+I+E
Sbjct: 320 KARLVAKGYNQEEGIDYEETYAPVARLEVIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQE 141
Query: 1208 EVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIK 1253
EVYV+QPPGFE P HVYKL+K+LYGLKQAPRAWY+R+SNFL++
Sbjct: 140 EVYVEQPPGFEIPDKPTHVYKLQKALYGLKQAPRAWYERISNFLLE 3
>CO983516
Length = 724
Score = 154 bits (388), Expect = 4e-37
Identities = 75/120 (62%), Positives = 92/120 (76%)
Frame = +2
Query: 1168 FAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLKHPDHVY 1227
F PVARLE+IRLLL A LYQMDVKSAFLNG + EEVYV+QP GF D HPDHVY
Sbjct: 365 FHPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFIDPTHPDHVY 544
Query: 1228 KLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFG 1287
+LKK+LYGLKQAPRAWY+RL+ L + + +G +D TLF + ++++I QIYVDDI+FG
Sbjct: 545 RLKKALYGLKQAPRAWYERLTELLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFG 724
>AI966222
Length = 430
Score = 117 bits (294), Expect(2) = 5e-32
Identities = 52/88 (59%), Positives = 70/88 (79%)
Frame = +1
Query: 858 EMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTTYELFKGRRPNISYFHQFGC 917
EMART +++N KHF AE +N CY+QN+IYIRP+L++T YEL+KGR+PNISYF+ F C
Sbjct: 1 EMARTTLNDNLTPKHF*AEVMNIVCYLQNKIYIRPILKRTPYELWKGRKPNISYFYPFRC 180
Query: 918 TCYILNTKDYLKKFDAKAQRGIFLGYSE 945
C+I+NTKD L K D+K+ GIF+ YS+
Sbjct: 181 KCFIINTKDNLGKIDSKSDCGIFIAYSK 264
Score = 40.4 bits (93), Expect(2) = 5e-32
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +2
Query: 947 SKAYRVYNSETQCVEESMHVKFDDREPGSKTSEQSESNA 985
SKA+RVYNS T +EE++H++F +P + E ES A
Sbjct: 269 SKAFRVYNSGTLVIEEAIHIRFGKNKPNKELLELDESFA 385
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
(30%)
Length = 687
Score = 128 bits (322), Expect = 2e-29
Identities = 64/154 (41%), Positives = 94/154 (60%), Gaps = 1/154 (0%)
Frame = +2
Query: 1438 KLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQ 1497
+L G+CDAD+AG ++R+STSG C F+G NL+SW SK+Q +A S+AEAEY S A +
Sbjct: 14 QLSGYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMVTCE 193
Query: 1498 LLWMKHQLEDYQI-NANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGIL 1556
L+W+K L++ + + +YCDN AA+ ++ NP+ H R KHIEI HFIR+ + +
Sbjct: 194 LMWIKQFLQELRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLLSKEI 373
Query: 1557 DIQFIDIEHQWADIFTKPLSVERFDFIKKNLNMH 1590
+FI Q DI TK L + + L +
Sbjct: 374 VTEFIGSNDQPVDILTKSLRGPKIQIVCSKLGAY 475
>CO982036
Length = 674
Score = 124 bits (311), Expect = 3e-28
Identities = 73/207 (35%), Positives = 120/207 (57%), Gaps = 4/207 (1%)
Frame = -2
Query: 1279 IYVDDIIFGSTNASLCK*FSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKE 1338
+YVD II GS+ +L + + + F + ++G+L +F+ I++ + ++ +T +
Sbjct: 640 VYVDIIITGSS-CTLIQNLTSKLNSSFPLKLLGKLDYFVEIEVKSMPDLLFSLRTSIFEI 464
Query: 1339 LLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPAILFSVCL 1398
+K + + + +++PM TC LSK D+ YR ++G+L Y T RP I F+V
Sbjct: 463 FCRKPR*Q-AQPISSPMTTTCKLSKSDSDLFSGPTFYRSVVGALQYTTVIRPEISFAVNK 287
Query: 1399 CARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYK---LIGFCDADYAGDRIERK 1455
+F S+P +SH T VKRI RYLKG+ + GL + ++ + + GFCDAD+A +++
Sbjct: 286 VCQFMSNPLDSHWTEVKRILRYLKGSLSYGL*LKPAISSQPLPIRGFCDADWASAVDDKR 107
Query: 1456 STSGNCQFLGENLIS-WASKRQATIAM 1481
STSG FLG NLIS W K+Q A+
Sbjct: 106 STSGAAVFLGPNLISWWXXKQQVAFAV 26
>BG508993
Length = 374
Score = 120 bits (301), Expect = 5e-27
Identities = 55/123 (44%), Positives = 83/123 (66%), Gaps = 1/123 (0%)
Frame = +1
Query: 1422 KGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAM 1481
KGT + GL Y S +YKL+GFCD+D+AGD +RKST+G F+G+ + +W+SK+Q + +
Sbjct: 4 KGTIDFGLFYSPSNNYKLVGFCDSDFAGDVDDRKSTTGFVFFMGDCVFTWSSKKQGIVTL 183
Query: 1482 STAEAEYISAASCCTQLLWMKHQLEDYQ-INANSIPIYCDNTAAICLSKNPILHSRAKHI 1540
T EAEY++A SC +W++ LE+ Q + S IY DN +A L+KN + H R+KHI
Sbjct: 184 FTCEAEYVAATSCTCHAIWLRRLLEELQLLQKESTKIYVDNRSAQELAKNSVFHERSKHI 363
Query: 1541 EIK 1543
+ +
Sbjct: 364 DTR 372
>BU548243
Length = 599
Score = 117 bits (294), Expect = 3e-26
Identities = 63/147 (42%), Positives = 84/147 (56%)
Frame = -1
Query: 1443 CDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMK 1502
CDA +A D + +ST G+ FLG NLISW S++Q A S+ EAEY S A +L W++
Sbjct: 590 CDAGWASDVDDHRSTLGSAIFLGPNLISWWSRKQQVTAQSSTEAEYRSIAQTSAELTWIQ 411
Query: 1503 HQLEDYQINANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGILDIQFID 1562
L + QI I CDN +A+ ++ N + HSR KH+EI F+ + V L I I
Sbjct: 410 ALLMELQIPFTPPVILCDNKSAVAIAHNLVFHSRTKHMEIDVFFVHEKVLSKQLQIFHIP 231
Query: 1563 IEHQWADIFTKPLSVERFDFIKKNLNM 1589
QWA I TKPLS RF F+K L +
Sbjct: 230 ALDQWAGILTKPLSSARFTFLKSKLTV 150
>TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%)
Length = 493
Score = 117 bits (292), Expect = 5e-26
Identities = 52/140 (37%), Positives = 93/140 (66%), Gaps = 1/140 (0%)
Frame = +3
Query: 1451 RIERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQLEDYQI 1510
R +RKST+G F+G+ +W SK+Q + +ST EAEY++A SC +W+++ L++ ++
Sbjct: 6 RDDRKSTTGFVFFMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELKM 185
Query: 1511 -NANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGILDIQFIDIEHQWAD 1569
+ I DN +A+ L+KNP+ H ++KHI+ ++HFIR+ ++K + ++++ + Q AD
Sbjct: 186 PQEEPMEICVDNKSALALAKNPVFHEKSKHIDTRYHFIRECIEKKEVKLKYVMSQDQAAD 365
Query: 1570 IFTKPLSVERFDFIKKNLNM 1589
IFTKPL +E F ++ L +
Sbjct: 366 IFTKPLKLETFVKLRSMLGV 425
>BU549979
Length = 615
Score = 116 bits (291), Expect = 7e-26
Identities = 60/183 (32%), Positives = 108/183 (58%), Gaps = 3/183 (1%)
Frame = -1
Query: 1401 RFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGN 1460
R+QS+P H K++ RYL+GT + L+Y+++ ++IG+ D+D+AG R+STSG
Sbjct: 606 RYQSNPGIDHWKTAKKVMRYLQGTKDYMLMYKQTNCLEVIGYSDSDFAGCVDSRRSTSGY 427
Query: 1461 CQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQLEDYQI---NANSIPI 1517
L + ++SW S +Q IA ST E E++ + +W+K + ++ + + +
Sbjct: 426 IFMLADGVVSWRSSKQTLIATSTMEVEFVPCFEATSHGVWLKSFMSSLRVVDSISRPLKL 247
Query: 1518 YCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGILDIQFIDIEHQWADIFTKPLSV 1577
YCDN AA+ ++KN +R+KHI+IK+ IR+ V++ + I+ ++ E D TK ++
Sbjct: 246 YCDNFAAVFMAKNNKSGNRSKHIDIKYLVIRERVKEKKVVIEHVNTELMIVDPLTKGMTP 67
Query: 1578 ERF 1580
+ F
Sbjct: 66 KNF 58
>BI321712
Length = 399
Score = 116 bits (290), Expect = 9e-26
Identities = 56/124 (45%), Positives = 83/124 (66%)
Frame = -3
Query: 1279 IYVDDIIFGSTNASLCK*FSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKE 1338
+YVDD+IF N S+ + F K M +EFEM+ MG + ++LGI++ Q +G+++ Q Y KE
Sbjct: 379 LYVDDLIFTGNNPSMFEEFKKDMSNEFEMTDMGLMAYYLGIEVKQEDKGIFITQEGYAKE 200
Query: 1339 LLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPAILFSVCL 1398
+LKKFK++D + TPM LSK + G VD LY+ +IGSL YLT +RP IL+ V +
Sbjct: 199 VLKKFKMDDANPVGTPMECGSKLSKHEKGENVDPTLYKSLIGSLRYLTCTRPDILYVVGV 20
Query: 1399 CARF 1402
+R+
Sbjct: 19 VSRY 8
>BI425121
Length = 412
Score = 114 bits (284), Expect = 4e-25
Identities = 69/162 (42%), Positives = 89/162 (54%), Gaps = 10/162 (6%)
Frame = +3
Query: 760 SLYGSKYGLVIVDDYSRWTWVKFIKSKDYAC----------EVFSSFCTQIQSEKELKIL 809
SL KY + VDDYSR+TWV F+ K + +VF ++ E L+IL
Sbjct: 6 SLGCKKYEFLTVDDYSRYTWVYFLAHKHESLRYFIRGFKMKKVFVFLLLEVTMELSLRIL 185
Query: 810 KVRSDYGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNL 869
FCE++GI H S PRTPQ+N VVERKNRTLQE ART++
Sbjct: 186 S*NH-------------FCERNGIFHNLS*PRTPQENRVVERKNRTLQEKARTILF---- 314
Query: 870 AKHFWAEAVNTSCYIQNRIYIRPMLEKTTYELFKGRRPNISY 911
T+C++QN+I IRPM++KT YEL+KGRR ISY
Sbjct: 315 ----------TTCFVQNKILIRPMIKKTPYELWKGRRHIISY 410
>TC232593 weakly similar to UP|Q9XG91 (Q9XG91) Tpv2-1c protein (Fragment),
partial (16%)
Length = 562
Score = 113 bits (283), Expect = 6e-25
Identities = 55/122 (45%), Positives = 83/122 (67%)
Frame = +1
Query: 1275 LIVQIYVDDIIFGSTNASLCK*FSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTK 1334
LIV +YVDD++ +A L + F + M FEM+ +G + +FLGI+I QS+ V + Q K
Sbjct: 193 LIVSLYVDDLLVTRDDARLVEEFKQEMMQAFEMTNLGLMTYFLGIEIKQSQNKVLICQRK 372
Query: 1335 YTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPAILF 1394
Y KE+LKKF++E+CK ++TPM+ +K D +D+ YR +IG L+YLTA+RP ILF
Sbjct: 373 YAKEILKKFQMEECKSVSTPMNQKEKFNKVDGADKIDEGYYRSLIGCLMYLTATRPDILF 552
Query: 1395 SV 1396
++
Sbjct: 553 AI 558
>AI959950
Length = 466
Score = 107 bits (268), Expect = 3e-23
Identities = 55/84 (65%), Positives = 66/84 (78%)
Frame = -1
Query: 1148 KPDFVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEE 1207
K VA+GYSQQEGIDY +TFA VARLE I +LLS+A + LYQMDVKSAFLNG+I++
Sbjct: 253 KARLVAKGYSQQEGIDYPKTFALVARLEVICILLSFATYSNMKLYQMDVKSAFLNGLIQK 74
Query: 1208 EVYVKQPPGFEDLKHPDHVYKLKK 1231
EVYV+QPPGFE+ HV+KL K
Sbjct: 73 EVYVEQPPGFENETLHQHVFKLNK 2
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.332 0.143 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,703,175
Number of Sequences: 63676
Number of extensions: 978364
Number of successful extensions: 6088
Number of sequences better than 10.0: 142
Number of HSP's better than 10.0 without gapping: 5937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6040
length of query: 1594
length of database: 12,639,632
effective HSP length: 110
effective length of query: 1484
effective length of database: 5,635,272
effective search space: 8362743648
effective search space used: 8362743648
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 65 (29.6 bits)
Medicago: description of AC137996.10