TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137994.2 + phase: 0 /pseudo
         (379 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CF922341                                                               87  9e-18
AW706233                                                               60  1e-09
TC228885                                                               46  3e-05
CF922207                                                               40  0.002
TC228886                                                               39  0.005
AW733535 weakly similar to GP|4156245|dbj ATHP3 {Arabidopsis tha...    32  0.62
TC221267                                                               30  2.3

>CF922341 
          Length = 675

 Score = 87.4 bits (215), Expect = 9e-18
 Identities = 51/133 (38%), Positives = 73/133 (54%), Gaps = 9/133 (6%)
 Frame = +1

Query: 1   IPTTQQNHGPIFHAE--------SVKSYVRVDNLQEKYNEIQREMKALHRKELFGI-NAY 51
           IP      GP +H +        S   +V  +    K + ++  ++A+   E +   N  
Sbjct: 202 IPLRNTLEGPQYHPQLHLLHSTTSKNPHVMAE--MGKLDHLEEGLRAIEGGEDYAFANLE 375

Query: 52  DLCLVSNVVIPPKFKVPDFEKYKGNTFPKIHLVMYVRKMSYQADNDELFIHYFQDSLTGT 111
           +L LV N++ PPKFKV DF+KYKG T PK HL MY +KM   A ++EL IH FQ+SLTG 
Sbjct: 376 ELFLVPNIITPPKFKVLDFDKYKGTTCPKNHLKMYCQKMGAYAKDEELLIHSFQESLTGV 555

Query: 112 ALLGYMGLDKSDI 124
           A+  Y  L+ S +
Sbjct: 556 AVTWYTNLEPSRV 594


>AW706233 
          Length = 376

 Score = 60.5 bits (145), Expect = 1e-09
 Identities = 30/72 (41%), Positives = 45/72 (61%), Gaps = 1/72 (1%)
 Frame = -3

Query: 28  EKYNEIQREMKALHRKELFGI-NAYDLCLVSNVVIPPKFKVPDFEKYKGNTFPKIHLVMY 86
           EK + ++   KA+   + +   N  +L LV N++ PPKFKV +F+KYKG T PK HL MY
Sbjct: 347 EKLDHLKERFKAIEGGQDYAFANLEELFLVXNIISPPKFKVLNFDKYKGTTCPKNHLKMY 168

Query: 87  VRKMSYQADNDE 98
            +KM   A +++
Sbjct: 167 CQKMGAYAKDEK 132


>TC228885 
          Length = 901

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 31/75 (41%), Positives = 39/75 (51%), Gaps = 1/75 (1%)
 Frame = -3

Query: 291 IPMKYADLFPILLERNLVH-TKAPLPVPARLSARYRPNLFCAFHQGASCHDIEHCFSLKK 349
           IP+ YADL P LL+ ++V  T A +  P  L   Y  N  CA H  A    IEH  +LK+
Sbjct: 608 IPVSYADLLPYLLDNSMVAITLAKVHQPPFLR-EYDSNAMCACHGEAPGRSIEHYRALKR 432

Query: 350 IVQNLIPENLLPLED 364
            VQ LI    L  E+
Sbjct: 431 KVQGLIDAGWLKFEE 387


>CF922207 
          Length = 616

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = -1

Query: 297 DLFPILLERNLVH---TKAPLPVPARLSARYRPNLFCAFHQGASCHDIEHCFSLKKIVQN 353
           +L P  L+ ++V    TK P P   R    Y  N  CA+H GA  H IEHC + K  V +
Sbjct: 535 NLIPYPLDNSMVAITPTKVPQPPFFR---EYDSNATCAYHGGAPGHSIEHCMTPKHKV*S 365

Query: 354 LIPENLLPLED 364
           LI    L  E+
Sbjct: 364 LIDTG*LKFEE 332


>TC228886 
          Length = 748

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 19/41 (46%), Positives = 23/41 (55%)
 Frame = +3

Query: 324 YRPNLFCAFHQGASCHDIEHCFSLKKIVQNLIPENLLPLED 364
           Y  N  CA+H GAS H IEHC + K  V +LI    L  E+
Sbjct: 153 YDSNATCAYHGGASGHSIEHCMTPKHKV*SLIDTGWLKFEE 275


>AW733535 weakly similar to GP|4156245|dbj ATHP3 {Arabidopsis thaliana},
           partial (88%)
          Length = 454

 Score = 31.6 bits (70), Expect = 0.62
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -2

Query: 241 SEYAEKSTSTTVSGLSPCCRCYA*RQCCSK 270
           S Y  ++TSTT SGL   C C +*  C SK
Sbjct: 153 SSYKRETTSTTKSGLFSSCSCCS*SNCPSK 64


>TC221267 
          Length = 539

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 22/65 (33%), Positives = 29/65 (43%), Gaps = 8/65 (12%)
 Frame = -3

Query: 243 YAEKSTSTTVSGLSPCCRCYA*RQCCSKSRLSTPISTISTTG*--------TQIDLIPMK 294
           YA  S STT+S   PCC        C KSR   P  T+  + *        +++   P+K
Sbjct: 492 YANLSGSTTISVYKPCC*I---NSLC*KSRKHYPTPTLPGSP*P*KKSKNTSKVQQEPLK 322

Query: 295 YADLF 299
           YA  F
Sbjct: 321 YAPKF 307


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.340    0.147    0.501 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,876,080
Number of Sequences: 63676
Number of extensions: 318156
Number of successful extensions: 2479
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2479
length of query: 379
length of database: 12,639,632
effective HSP length: 99
effective length of query: 280
effective length of database: 6,335,708
effective search space: 1773998240
effective search space used: 1773998240
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 60 (27.7 bits)