TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137838.7 + phase: 0 
         (692 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC210966 similar to UP|Q96338 (Q96338) AMP-binding protein , par...   298  7e-81
TC206424 similar to UP|Q8LKS6 (Q8LKS6) Long chain acyl-CoA synth...   285  6e-77
TC206423 similar to UP|Q8LKS6 (Q8LKS6) Long chain acyl-CoA synth...   110  2e-24
TC217745 similar to UP|Q96538 (Q96538) Acyl-CoA synthetase  , pa...    47  2e-05
TC227478 similar to UP|Q96537 (Q96537) Acyl CoA synthetase  , pa...    44  2e-04
BI786158                                                               33  0.32
BE820393                                                               32  0.72
TC211051                                                               31  2.1
TC220049 similar to UP|MSH3_ARATH (O65607) DNA mismatch repair p...    30  4.7
BE661597 similar to GP|5262203|emb nodulin-like protein {Arabido...    29  6.1
BE661594 similar to GP|5262203|emb nodulin-like protein {Arabido...    29  6.1
BG652423                                                               29  8.0
TC227567 similar to UP|Q9MA20 (Q9MA20) T5E21.13, partial (15%)         29  8.0

>TC210966 similar to UP|Q96338 (Q96338) AMP-binding protein , partial (32%)
          Length = 648

 Score =  298 bits (762), Expect = 7e-81
 Identities = 163/214 (76%), Positives = 177/214 (82%)
 Frame = +1

Query: 243 AIFSPFAPQSLRMLQPFAIQVAQLEPQRVPS*PMKTSLQMLPGPL*MKNSTLQTFIYPIF 302
           A FSPF  Q+L  LQPFA QV QLEPQ+V S*PM+T LQ+L G L  +NS L  FIYPI 
Sbjct: 7   ATFSPFVHQNLMTLQPFATQVVQLEPQKVLS*PMETLLQVLLGVLWTRNSVLLMFIYPIS 186

Query: 303 LWHTFMSERIKS*QYILAWQWDSTRGII*N*WMT*QL*DLLSSVAFLAYIIEYMLVLLML 362
           LWHTFMSE+ +S*QYILA QWDSTRGI+*N*WMT* L*DLLS V FL YI EYMLVLLML
Sbjct: 187 LWHTFMSEQTRS*QYILALQWDSTRGIV*N*WMT*LL*DLLSFVVFLGYITEYMLVLLML 366

Query: 363 LKHLVV*RRGFSMLLTMLKGRHYCMARTHLQCGTD*FSTR*KKNLEDEFVLWYQVPHLYR 422
           LKHLVV*RR + ML TMLKGR YCM RTHLQCGTD*FSTR*KK+LEDEF LW+QVPHLY 
Sbjct: 367 LKHLVV*RRDYLMLPTMLKGRLYCMGRTHLQCGTD*FSTR*KKSLEDEFGLWHQVPHLYH 546

Query: 423 LMSWNF*RFALVGE*LKVME*LRLLVL*AALITV 456
           L+SWNF*RFALV E*LK  E* R+LVL*AA + V
Sbjct: 547 LISWNF*RFALVVE*LKDTE*QRVLVL*AASMRV 648


>TC206424 similar to UP|Q8LKS6 (Q8LKS6) Long chain acyl-CoA synthetase 6  ,
           partial (30%)
          Length = 1009

 Score =  285 bits (728), Expect = 6e-77
 Identities = 154/214 (71%), Positives = 167/214 (77%)
 Frame = +2

Query: 477 FRK*TIHLMISPTPAVKFVSGVPLFFKVITKMKLKREKSSMKRDGCIPEILGHG*LAVVS 536
           F+K*TIHLMISP P VKFVSGVPLFF+ ITKMK +RE S MK DG I EILGHG L VVS
Sbjct: 23  FQK*TIHLMISPIPVVKFVSGVPLFFEAITKMKPRREMSLMKTDGYILEILGHGYLVVVS 202

Query: 537 K*LIGRRISLNWHKASTLLQRR*KMYMSNAILGHSALYMVIVLILLWYLLSRWILMS*KH 596
           K LIGRRISL+WHK STLL RR K YM NA L  +ALYMVI  +LLW LLS WI+++*KH
Sbjct: 203 KLLIGRRISLSWHKGSTLLLRRLKTYMPNANLWRNALYMVIA*MLLW*LLSLWIMIT*KH 382

Query: 597 GLLPKT*CIMI*HNFAMIQEQRQLFWLRWMLLDAKLNLEVLNLQKRSFWWLNHLRWKMVC 656
           GLL K *CIMI*HNFAMIQ+Q QL WLRWML D +L+ EVLN  KRS W  NHLRWKM C
Sbjct: 383 GLLQKE*CIMI*HNFAMIQKQGQLSWLRWMLPDERLS*EVLNS*KRSLWCSNHLRWKMAC 562

Query: 657 *LRQ*RLRGLKRKNTLAKQYLICIASSQNPTLLR 690
           *LR  RLRGLKR+N   KQYLIC  SSQ   LLR
Sbjct: 563 *LRHSRLRGLKRRNISQKQYLICTVSSQELILLR 664


>TC206423 similar to UP|Q8LKS6 (Q8LKS6) Long chain acyl-CoA synthetase 6  ,
           partial (11%)
          Length = 578

 Score =  110 bits (275), Expect = 2e-24
 Identities = 60/86 (69%), Positives = 63/86 (72%)
 Frame = +1

Query: 605 IMI*HNFAMIQEQRQLFWLRWMLLDAKLNLEVLNLQKRSFWWLNHLRWKMVC*LRQ*RLR 664
           IMI HNFAMIQ+  QL WLRWMLLD  L+LEVLN  K S    NHLRWKMVC*LR  RLR
Sbjct: 1   IMIWHNFAMIQK*GQLSWLRWMLLDETLSLEVLNS*KLSL*CSNHLRWKMVC*LRHSRLR 180

Query: 665 GLKRKNTLAKQYLICIASSQNPTLLR 690
           GLKR+N L KQYLIC  SSQ    LR
Sbjct: 181 GLKRRNILQKQYLICTMSSQELMFLR 258


>TC217745 similar to UP|Q96538 (Q96538) Acyl-CoA synthetase  , partial (37%)
          Length = 986

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 55/181 (30%), Positives = 83/181 (45%), Gaps = 8/181 (4%)
 Frame = +2

Query: 514 KSSMKR----DGCIPEILGHG*LAVVSK*LIGRRISLNWHKASTLLQRR*KMYMSNAILG 569
           K+S+KR    +G I  IL  G L    K LIGRRI L++HK + LL +  +++    +L 
Sbjct: 233 KTSLKRF*LMNGSIQGILESGNLMEA*KLLIGRRIYLSFHKENMLLSKTWRIFTVKFLLL 412

Query: 570 HSALYMVIVL-ILLWYLL---SRWILMS*KHGLLPKT*CIMI*HNFAMIQEQRQLFWLRW 625
           +   +M  VL   LW LL   S+ + +  K  + P T  + +      + EQ+       
Sbjct: 413 NLYGFMETVLRPSLWLLLTPVSKHLNIGPKKMVYPWTSILSV-----KMLEQKVT*LKSS 577

Query: 626 MLLDAKLNLEVLNLQKRSFWWLNHLRWKMVC*LRQ*RLRGLKRKNTLAKQYLICIASSQN 685
             L  K + +VL+L K+      HL W +   L+  R RG    NT+      CI    N
Sbjct: 578 QRLRRKRS*KVLSL*KQFTLTQFHLTWNVTLSLQHTRRRGHSCLNTIRMPLTTCIRVEVN 757

Query: 686 P 686
           P
Sbjct: 758 P 760


>TC227478 similar to UP|Q96537 (Q96537) Acyl CoA synthetase  , partial (28%)
          Length = 972

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 54/157 (34%), Positives = 69/157 (43%), Gaps = 1/157 (0%)
 Frame = +1

Query: 490 PAVKFVSGVPLFFKVITKMKLKREKSSMKRDGCIPEILGHG*LAVVSK*LIGRRISLNWH 549
           P  KFV        VIT +K+  +K  +   G I   L +G      K LIGRRISLN  
Sbjct: 1   PVEKFV*EEIPCSPVITSVKILPKKLWLMA-GFIQVTLENGNQMEP*KLLIGRRISLNCP 177

Query: 550 KASTLLQRR*KMYMSNAILGHSALYMVIVLILLWYLLSRWILMS*KHGLLPK-T*CIMI* 608
           K + LL R  K  + NA L H    M   L   W LL  W L      +  K T  +MI 
Sbjct: 178 KENILLWRILKTSICNAHL*HRYGCMETALSHSW*LL--WSLKEKPLRIGQKSTI*LMIL 351

Query: 609 HNFAMIQEQRQLFWLRWMLLDAKLNLEVLNLQKRSFW 645
           + + +I +Q   FW+    L    NLE L+  K   W
Sbjct: 352 NLYVIILKQENTFWMSSTALVRNTNLEDLSC*KPFIW 462


>BI786158 
          Length = 411

 Score = 33.5 bits (75), Expect = 0.32
 Identities = 36/108 (33%), Positives = 51/108 (46%), Gaps = 2/108 (1%)
 Frame = +2

Query: 537 K*LIGRRISLNWHKASTLLQRR*KMYMSNAILGHSALYMVIVLILLWYLLSRWILMS*KH 596
           K LI +RISL+  K + LL R  K    +A L H    M  VL L W+   +W  +  + 
Sbjct: 95  KLLIEKRISLSCLKENMLLWRILKTNTYSAPL*HRFGSMETVLNLSWW---QWWSLKERP 265

Query: 597 GLLPKT*CI--MI*HNFAMIQEQRQLFWLRWMLLDAKLNLEVLNLQKR 642
             + +   I  MI + +  IQ Q   FW+    L    NLEVL+  K+
Sbjct: 266 LRIGQ*SIILQMISNLYVKIQRQENTFWMSSTTLVRNTNLEVLSC*KQ 409


>BE820393 
          Length = 688

 Score = 32.3 bits (72), Expect = 0.72
 Identities = 19/54 (35%), Positives = 27/54 (49%)
 Frame = -3

Query: 606 MI*HNFAMIQEQRQLFWLRWMLLDAKLNLEVLNLQKRSFWWLNHLRWKMVC*LR 659
           MI + +  IQ Q   FW+    L    NLEVL+  K+  W    L W+ + *L+
Sbjct: 644 MISNLYVKIQRQENTFWMSSXXLVRNTNLEVLSC*KQFIWNQFPLTWREI**LQ 483


>TC211051 
          Length = 479

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -1

Query: 167 MTLSVLMLSNILLTMLWCKLYFV-SLKH 193
           +T   L++ N  LTMLWC+ YF+ SL+H
Sbjct: 155 ITNHTLLIQNGSLTMLWCECYFLFSLRH 72


>TC220049 similar to UP|MSH3_ARATH (O65607) DNA mismatch repair protein MSH3
           (AtMsh3), partial (19%)
          Length = 1267

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 613 MIQEQRQLFWLRWMLLDAKLNLEVLNLQKRSFWWLNHL 650
           M+ +QR  +W RW L           ++K++  WLNHL
Sbjct: 801 MVDQQRSYYWTRW*L-----------VKKKNSLWLNHL 881


>BE661597 similar to GP|5262203|emb nodulin-like protein {Arabidopsis
           thaliana}, partial (44%)
          Length = 849

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 619 QLFWLRWMLLDAKLNLEVLNLQKRSFWWLNHLRWKMVC*LR 659
           QL WLRW+   + L+L   ++     W   H RW M   LR
Sbjct: 513 QLPWLRWVFFSSSLSLTCKSVPL*K*WLA*H*RWPMQTLLR 391


>BE661594 similar to GP|5262203|emb nodulin-like protein {Arabidopsis
           thaliana}, partial (41%)
          Length = 786

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -2

Query: 619 QLFWLRWMLLDAKLNLEVLNLQKRSFWWLNHLRWKMVC*LR 659
           QL WLRW+   + L+L   ++     W   H RW M   LR
Sbjct: 509 QLPWLRWVFFSSSLSLTCKSVPL*K*WLA*H*RWPMQTLLR 387


>BG652423 
          Length = 405

 Score = 28.9 bits (63), Expect = 8.0
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 624 RWMLLDAKLNLEVLNLQKRSFWWLNHLRWKMV 655
           +W+L+  +LN   L  +K+S  ++NH+ WK +
Sbjct: 237 QWLLIHTQLNYRFL--KKKSIGFVNHMLWKKI 326


>TC227567 similar to UP|Q9MA20 (Q9MA20) T5E21.13, partial (15%)
          Length = 1168

 Score = 28.9 bits (63), Expect = 8.0
 Identities = 11/30 (36%), Positives = 21/30 (69%)
 Frame = +2

Query: 627 LLDAKLNLEVLNLQKRSFWWLNHLRWKMVC 656
           +L+A++ + +L ++ R+FW L HL   +VC
Sbjct: 689 ILEARIKMMLLIMKPRTFWVLLHLLQDLVC 778


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.358    0.158    0.552 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,552,618
Number of Sequences: 63676
Number of extensions: 491246
Number of successful extensions: 6905
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 3828
Number of HSP's successfully gapped in prelim test: 273
Number of HSP's that attempted gapping in prelim test: 2923
Number of HSP's gapped (non-prelim): 4329
length of query: 692
length of database: 12,639,632
effective HSP length: 104
effective length of query: 588
effective length of database: 6,017,328
effective search space: 3538188864
effective search space used: 3538188864
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 62 (28.5 bits)