BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137838.2 - phase: 0
(137 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC231756 similar to UP|O60585 (O60585) Ser/Arg-related nuclear m... 191 1e-49
BG882211 42 9e-05
TC212838 31 0.21
TC227847 similar to UP|O22161 (O22161) F-box protein family, AtF... 28 1.8
TC216817 weakly similar to UP|KHLX_HUMAN (Q9Y2M5) Kelch-like pro... 27 3.0
TC230595 similar to UP|Q6NNI1 (Q6NNI1) At3g56210, partial (78%) 27 3.0
BF069988 27 3.0
AI794820 similar to GP|18149176|dbj exo-beta-1 3-glucanase {Aspe... 27 4.0
TC210788 similar to UP|Q944G1 (Q944G1) Phosphomevalonate kinase,... 26 5.2
TC231933 similar to PIR|F86340|F86340 protein F2D10.34 [imported... 26 5.2
TC206199 similar to UP|Q9LK42 (Q9LK42) Emb|CAB10188.1, partial (... 25 8.9
BU764240 25 8.9
CO981478 25 8.9
>TC231756 similar to UP|O60585 (O60585) Ser/Arg-related nuclear matrix
protein, partial (4%)
Length = 864
Score = 191 bits (484), Expect = 1e-49
Identities = 100/137 (72%), Positives = 114/137 (82%), Gaps = 2/137 (1%)
Frame = +1
Query: 1 MEFQRRQGHCLSERKGQKRKLDEELPEDRQISSAPPTADERAALLVEVANQVTVLESTFT 60
ME QRR CL RKG KRKL+EE +D QIS APPT D R ALL ++ QV++L+S F+
Sbjct: 79 MELQRRPDQCLPVRKGLKRKLEEEFDDDPQIS-APPTGDARDALLSDLKEQVSLLDSNFS 255
Query: 61 WNEADRAAAKRATHALADLAKNEEVVNVIVEGGAIPALIKHLQAPPV--TDCVQKPLPFE 118
WNE DRAAAKRATHALADLAKNEEVVNVIVEGGAIPAL+KHLQAPP+ +D + +P+PFE
Sbjct: 256 WNEHDRAAAKRATHALADLAKNEEVVNVIVEGGAIPALVKHLQAPPLAESDRLPRPMPFE 435
Query: 119 HEVEKGSAFALGLLAVK 135
HEVEKGSAFALGLLAVK
Sbjct: 436 HEVEKGSAFALGLLAVK 486
Score = 27.7 bits (60), Expect = 1.8
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 64 ADRAAAKRATHALADLA-KNEEVVNVIVEGGAIPALI 99
AD + A AL LA KN+E N IVE A+P LI
Sbjct: 703 ADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 813
>BG882211
Length = 421
Score = 42.0 bits (97), Expect = 9e-05
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = -1
Query: 52 VTVLESTFTWNEADRAAAKRATHALADLAKN 82
V++L+STF WNE +R A K A HAL +L+KN
Sbjct: 136 VSLLDSTFFWNEPNRPATKHAAHALVNLSKN 44
>TC212838
Length = 460
Score = 30.8 bits (68), Expect = 0.21
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Frame = -2
Query: 1 MEFQRRQGHCLSERKGQKRKLDEELPEDRQ-ISSAPPTADERAALLVEVAN-QVTVLEST 58
+E QRR+ CLS+ K KR ++++P + I+ + PT + +L+ A+ ++ +L
Sbjct: 273 IELQRRREWCLSQSKSDKRIPNKQIPNVLEIITLSMPTRKTQI*ILINKASFEIKILRQE 94
Query: 59 FT 60
+T
Sbjct: 93 YT 88
>TC227847 similar to UP|O22161 (O22161) F-box protein family, AtFBX5,
partial (43%)
Length = 1566
Score = 27.7 bits (60), Expect = 1.8
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +2
Query: 54 VLESTFTWNEADRAAAKRATHALADLAKNEEVVNVIVEGGAIPALI 99
+++ F W+ + +RA ALA+LA +++ + G + AL+
Sbjct: 20 LVDLIFKWSSSGDGVLERAAGALANLAADDKCSTEVALAGGVHALV 157
>TC216817 weakly similar to UP|KHLX_HUMAN (Q9Y2M5) Kelch-like protein X,
partial (5%)
Length = 1071
Score = 26.9 bits (58), Expect = 3.0
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +1
Query: 89 IVEGGAIPALIKHLQAPPVTDCVQKPLPFEHEVEKGSAFALGLLA 133
IV+ GA+ LI+ LQ+P V ++ + SAFALG LA
Sbjct: 238 IVQRGAVQPLIEMLQSPDV------------QLREMSAFALGRLA 336
>TC230595 similar to UP|Q6NNI1 (Q6NNI1) At3g56210, partial (78%)
Length = 603
Score = 26.9 bits (58), Expect = 3.0
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +2
Query: 39 DERAALLVEVANQVTVLESTFTWNEADRAAAKRATHALADLAKNEEVVNVIVEGGAIPAL 98
DER +VE+ +L T D K A HAL L++++E + + GAI +
Sbjct: 314 DERRKKIVEMGGAQELLNMLST--AKDDRTRKEALHALDALSQSDEALASLHHAGAISVI 487
>BF069988
Length = 400
Score = 26.9 bits (58), Expect = 3.0
Identities = 15/42 (35%), Positives = 25/42 (58%), Gaps = 1/42 (2%)
Frame = +3
Query: 67 AAAKRATHALADLAKNEE-VVNVIVEGGAIPALIKHLQAPPV 107
AA A +AL ++ N++ VV IVE A+P +++ L P+
Sbjct: 153 AAQVAAANALVNITTNQDRVVTFIVESHAVPIIVQVLGDSPM 278
>AI794820 similar to GP|18149176|dbj exo-beta-1 3-glucanase {Aspergillus
phoenicis}, partial (1%)
Length = 449
Score = 26.6 bits (57), Expect = 4.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 25 LPEDRQISSAPPTADERAA 43
+P RQ++ APP+AD R+A
Sbjct: 140 VPVPRQVAGAPPSADARSA 196
>TC210788 similar to UP|Q944G1 (Q944G1) Phosphomevalonate kinase, partial
(29%)
Length = 592
Score = 26.2 bits (56), Expect = 5.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 54 VLESTFTWNEADRAAAKRATHALADL 79
V ++TFTWNE +R +LA L
Sbjct: 76 VAQTTFTWNEIERRGLPLTPESLATL 153
>TC231933 similar to PIR|F86340|F86340 protein F2D10.34 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(65%)
Length = 619
Score = 26.2 bits (56), Expect = 5.2
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
Frame = +2
Query: 12 SERKGQKRKLDEELPEDRQISSAPPTADERAALLVEVA--NQVTVLESTFTWNEADRAAA 69
S KG K+K+ LP+ + + + A L E A +++ VL A
Sbjct: 224 SANKGVKKKVLRSLPKVTASAESAVKFADCAICLTEFAAGDEIRVLPQCGHGFHVSCIDA 403
Query: 70 KRATHALADLAKNEEVVNVIVEGGAIPALIKHLQAPPVTD 109
+H+ + VV+ + G IPA APPV D
Sbjct: 404 WLRSHSSCPSCRQILVVSRCDKCGGIPAPASSSSAPPVAD 523
>TC206199 similar to UP|Q9LK42 (Q9LK42) Emb|CAB10188.1, partial (62%)
Length = 911
Score = 25.4 bits (54), Expect = 8.9
Identities = 20/72 (27%), Positives = 30/72 (40%)
Frame = -3
Query: 24 ELPEDRQISSAPPTADERAALLVEVANQVTVLESTFTWNEADRAAAKRATHALADLAKNE 83
E P +R S D L VA ++T + T + A+ A + DLA+
Sbjct: 423 EDPLNRPTSEDILVVDNEINFLPHVAEEITNMLLTQIGCTVEPIGAENAHFHVQDLARGF 244
Query: 84 EVVNVIVEGGAI 95
V + EGGA+
Sbjct: 243 GGVESVDEGGAV 208
>BU764240
Length = 444
Score = 25.4 bits (54), Expect = 8.9
Identities = 10/21 (47%), Positives = 12/21 (56%)
Frame = -3
Query: 103 QAPPVTDCVQKPLPFEHEVEK 123
Q PPVTD + +P E EK
Sbjct: 433 QKPPVTDVLSATIPIESNTEK 371
>CO981478
Length = 818
Score = 25.4 bits (54), Expect = 8.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 101 HLQAPPVTDCVQKPLPFEHEVEKGSAF 127
H PPV + +Q PL EH+ AF
Sbjct: 415 HKNFPPVLEILQSPLDMEHQSGLCEAF 495
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.315 0.131 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,168,110
Number of Sequences: 63676
Number of extensions: 49758
Number of successful extensions: 272
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of query: 137
length of database: 12,639,632
effective HSP length: 87
effective length of query: 50
effective length of database: 7,099,820
effective search space: 354991000
effective search space used: 354991000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)
Medicago: description of AC137838.2