Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137831.14 + phase: 0 
         (429 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC226228 similar to UP|Q8L9C3 (Q8L9C3) Copia-like retroelement p...    61  1e-09
TC226231 similar to UP|Q8L9C3 (Q8L9C3) Copia-like retroelement p...    60  2e-09
TC226230 similar to UP|Q8L9C3 (Q8L9C3) Copia-like retroelement p...    49  6e-06
BU964405 weakly similar to GP|7110148|gb DNA repair-recombinatio...    34  0.11
TC208076                                                               34  0.14
TC208060 weakly similar to UP|Q840B9 (Q840B9) Endo-b1,4-mannanas...    33  0.32
TC227389 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacety...    32  0.42
TC217713 similar to UP|Q9FI75 (Q9FI75) Similarity to 5'-nucleoti...    30  2.1
TC216950                                                               30  2.7
BU760759 weakly similar to GP|14090380|dbj P0037C04.27 {Oryza sa...    29  4.7
TC204091 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1...    28  6.1
BG155252                                                               28  6.1
TC223611 weakly similar to UP|Q9LJ56 (Q9LJ56) Gb|AAD43149.1, par...    28  7.9
TC234564                                                               28  7.9

>TC226228 similar to UP|Q8L9C3 (Q8L9C3) Copia-like retroelement pol
           polyprotein, partial (97%)
          Length = 1094

 Score = 60.8 bits (146), Expect = 1e-09
 Identities = 40/178 (22%), Positives = 93/178 (51%), Gaps = 10/178 (5%)
 Frame = +2

Query: 226 TIEKLQQQLDVIDRRCELSRKSAVASLHSG-------NRKLALRYARELKLVTQSREKCS 278
           T++KL + L++++++ ++  K   A +          N++ A++  +  +L  Q  E+  
Sbjct: 272 TLDKLNETLEMLEKKEKVLLKKVAAEVEKAKEFTRGKNKRAAIQCLKRKRLYEQQIEQLG 451

Query: 279 SLLNRVEEVHGVVVDAESTKTVSEAMQIGARAIK--ENKISVEDVDICLRDLQESIDSQK 336
           +   R+ +   ++  A++T    +A++ GA A+K  +   +++DVD  + ++ E  ++ K
Sbjct: 452 NFQLRIHDQMIMLEGAKATTETVDALRTGAAAMKAMQKATNIDDVDKTMDEINEQTENMK 631

Query: 337 EVEKALE-QTPSYTDINDEDIEEELEELELALEKEAQVDTLEKTTTSEEGNATLEASE 393
           +++ AL     +  D +++++E ELEELE A   E +   L+  TT+      + A +
Sbjct: 632 QIQDALSAPIGAAADFDEDELEAELEELEGA---ELEEQLLQPATTAPAAPVQVPAGQ 796


>TC226231 similar to UP|Q8L9C3 (Q8L9C3) Copia-like retroelement pol
           polyprotein, partial (97%)
          Length = 1375

 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 39/167 (23%), Positives = 94/167 (55%), Gaps = 11/167 (6%)
 Frame = +1

Query: 227 IEKLQQQLDVIDRRCELSRKSAVASLHSG-------NRKLALRYARELKLVTQSREKCSS 279
           +++L  +L++++++ ++  K A A +          N++ A++  +  +L  Q  E+  +
Sbjct: 214 LDELNDKLEMLEKKEKVLLKKAAAEVEKAKEFTRAKNKRAAIQCLKRKRLYEQQIEQLGN 393

Query: 280 LLNRVEEVHGVVVDAESTKTVSEAMQIGARAIK--ENKISVEDVDICLRDLQESIDSQKE 337
              R+ +   ++  A++T    +A++ GA A++  + + +++DVD  + ++ E  ++ K+
Sbjct: 394 FQLRIHDQMIMLEGAKATTETVDALRTGAAAMRAMQKETNIDDVDKTMDEINEQTENMKQ 573

Query: 338 VEKALEQTP--SYTDINDEDIEEELEELELALEKEAQVDTLEKTTTS 382
           +++AL  TP  +  D +++++E ELEELE A   E +   L+  TT+
Sbjct: 574 IQEAL-STPIGAAADFDEDELEAELEELEGA---ELEEQLLQPATTA 702


>TC226230 similar to UP|Q8L9C3 (Q8L9C3) Copia-like retroelement pol
           polyprotein, partial (72%)
          Length = 834

 Score = 48.5 bits (114), Expect = 6e-06
 Identities = 34/129 (26%), Positives = 65/129 (50%), Gaps = 3/129 (2%)
 Frame = +2

Query: 268 KLVTQSREKCSSLLNRVEEVHGVVVDAESTKTVSEAMQIGARAIK--ENKISVEDVDICL 325
           K   Q  E+  +   R+ +   ++  A++T     A + GA AIK  +   +++DVD  +
Sbjct: 23  KFSQQHLEQLGNFQLRIHDQMILLEGAKATTETRHAYRTGAAAIKAMQKATNIDDVDKTM 202

Query: 326 RDLQESIDSQKEVEKALE-QTPSYTDINDEDIEEELEELELALEKEAQVDTLEKTTTSEE 384
            D+ E  ++ K+++ AL     +  D +++++E ELEELE A   E +   L+  TT+  
Sbjct: 203 DDINEQTENMKQIQDALSAPIGAAADFDEDELEAELEELEGA---ELEEQLLQPATTAPA 373

Query: 385 GNATLEASE 393
               + A +
Sbjct: 374 APVQVPAGQ 400


>BU964405 weakly similar to GP|7110148|gb DNA repair-recombination protein
           {Arabidopsis thaliana}, partial (11%)
          Length = 445

 Score = 34.3 bits (77), Expect = 0.11
 Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 14/105 (13%)
 Frame = +1

Query: 307 GARAIKENKISVEDVDICLRDLQESIDSQKEVEKALEQTPSYTDINDEDIEEEL------ 360
           G R ++E ++ +  +     +LQ  +D  K+ ++ +E+  S   +    + EE       
Sbjct: 64  GVRTLEEIQLELNTLQSTKENLQSELDRLKDEQRYMEKDLSSIQMRWHTVREEKTKATNI 243

Query: 361 --------EELELALEKEAQVDTLEKTTTSEEGNATLEASELLSD 397
                   EELE   E++ QVD  EK      G  + E  +LL++
Sbjct: 244 LQGVKRLEEELERLTEEKTQVDLDEKHLADALGPLSKETDKLLAN 378


>TC208076 
          Length = 670

 Score = 33.9 bits (76), Expect = 0.14
 Identities = 15/60 (25%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
 Frame = +1

Query: 316 ISVEDVDICLRDLQESIDSQKEVEKALEQTPSY-TDINDEDIEEELEELELALEKEAQVD 374
           + ++D+D    ++ + +D   E+++ L ++ +   DI+++D+  EL+ LEL +  E + D
Sbjct: 22  VKIQDIDNLQDEMMDLMDVSNEIQETLGRSYNVPDDIDEDDLMGELDALELDMGNETEAD 201


>TC208060 weakly similar to UP|Q840B9 (Q840B9) Endo-b1,4-mannanase 26B, partial
            (5%)
          Length = 2230

 Score = 32.7 bits (73), Expect = 0.32
 Identities = 29/127 (22%), Positives = 61/127 (47%), Gaps = 22/127 (17%)
 Frame = +1

Query: 317  SVEDVDICLRDLQESIDSQKEVEKAL-------EQTPSYTDIN-DEDIEE--ELEELELA 366
            S+ED+++  + LQE +D ++ + ++         ++  + +IN D  + E   LE++ +A
Sbjct: 1378 SLEDINLAFKQLQEGVDVEEVINRSTIKDQNVGGESKDHLEINSDLQVVEARSLEDINIA 1557

Query: 367  LEKEAQ------------VDTLEKTTTSEEGNATLEASELLSDTLSNLKLSDRPVGKSRT 414
            L + ++             DT  K   +E+G+A  + +E  +   S+ ++S   V KS  
Sbjct: 1558 LNQVSEGNKGELPNSLDSKDTSVKVEENEDGSA--KVNEFFNVATSSEEMSRTTVDKSED 1731

Query: 415  THAASEG 421
               +S G
Sbjct: 1732 VPNSSSG 1752


>TC227389 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
           HD2-P39, partial (63%)
          Length = 1144

 Score = 32.3 bits (72), Expect = 0.42
 Identities = 38/136 (27%), Positives = 59/136 (42%), Gaps = 4/136 (2%)
 Frame = +3

Query: 295 ESTKTVSEAMQIG--ARAIKENKISVEDVDICLRDLQESIDSQKEVEKALEQTPSYTDIN 352
           ES K V++A       + ++  K + ED D    D  +   S +E+E A   + S  +  
Sbjct: 471 ESKKAVAKASGSAKQVKVVEPKKDNEEDSDDDSDD-DDFGSSDEEMEDA--DSDSDDESG 641

Query: 353 DEDIEEELEELELALEKEAQVDTLEKTTTSEEG--NATLEASELLSDTLSNLKLSDRPVG 410
           DED +EE    ++ L K+   ++  KT  S +   NAT E            K   +  G
Sbjct: 642 DEDDDEETPPKKVDLGKKRPNESASKTPVSSKKAKNATPE------------KTDGKKGG 785

Query: 411 KSRTTHAASEGHKTAN 426
            + T H A +G KT N
Sbjct: 786 HTATPHPAKKGGKTPN 833


>TC217713 similar to UP|Q9FI75 (Q9FI75) Similarity to 5'-nucleotidase,
           partial (36%)
          Length = 1174

 Score = 30.0 bits (66), Expect = 2.1
 Identities = 16/66 (24%), Positives = 39/66 (58%), Gaps = 2/66 (3%)
 Frame = +1

Query: 306 IGARAIKENKISVEDVDICLRDL--QESIDSQKEVEKALEQTPSYTDINDEDIEEELEEL 363
           IG+R+ +E+ + + +    + DL  Q  +  Q+  +    QT + T++NDED+ + +++L
Sbjct: 307 IGSRSYRESLVELINQKEIVGDLFNQLRLALQRRSKDRPAQTLAATNLNDEDLTDSMQKL 486

Query: 364 ELALEK 369
            + +++
Sbjct: 487 LIVMQR 504


>TC216950 
          Length = 873

 Score = 29.6 bits (65), Expect = 2.7
 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 9/109 (8%)
 Frame = +2

Query: 291 VVDAESTKTVSEAMQIGAR-AIKENKISVE---DVDICLRDLQESIDSQKEVEKAL---- 342
           +++ E+ K V EA++     ++K  ++ VE    ++   + L + + +Q E EK      
Sbjct: 227 LIEEETAKRVEEAIRKRVEESLKSEEVQVEIERRLEEGRKRLNDEVAAQLEKEKEAALIE 406

Query: 343 -EQTPSYTDINDEDIEEELEELELALEKEAQVDTLEKTTTSEEGNATLE 390
            +Q         ED+E  LEE    +E+  + + LE+    EE    LE
Sbjct: 407 AKQKEEQARKEKEDLERMLEENRRKVEEAQRREALEQQRREEERYKELE 553


>BU760759 weakly similar to GP|14090380|dbj P0037C04.27 {Oryza sativa
           (japonica cultivar-group)}, partial (17%)
          Length = 429

 Score = 28.9 bits (63), Expect = 4.7
 Identities = 17/61 (27%), Positives = 30/61 (48%)
 Frame = +3

Query: 275 EKCSSLLNRVEEVHGVVVDAESTKTVSEAMQIGARAIKENKISVEDVDICLRDLQESIDS 334
           +K   LL +++ V+ V VDA+  K V       A+ +K+ K   +  +IC     E + +
Sbjct: 120 QKVKKLLQKIDGVYSVRVDADEGKVVVAGDVDPAKLVKKLKRGGKHAEICQNQKGEMMCN 299

Query: 335 Q 335
           Q
Sbjct: 300 Q 302


>TC204091 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
           (70%)
          Length = 2075

 Score = 28.5 bits (62), Expect = 6.1
 Identities = 21/77 (27%), Positives = 37/77 (47%), Gaps = 4/77 (5%)
 Frame = +2

Query: 330 ESIDSQKEVEKALEQTPSYTDINDEDIEEELEELELALEKEAQVDTLEKTTTSEEGNATL 389
           E ++ + E E+  E+     +  +ED EEE EE     E+E + D +++    ++    +
Sbjct: 128 EEVEEEVEEEEVEEEVEEEEEEEEEDEEEEEEE----EEEEEENDVVKQQQQQQQDEDDI 295

Query: 390 EASELL----SDTLSNL 402
             S+LL     D L NL
Sbjct: 296 PISKLLEPLGKDQLLNL 346


>BG155252 
          Length = 341

 Score = 28.5 bits (62), Expect = 6.1
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +1

Query: 113 MTNLIIRPATPDIMAEESVVLIPMLKDKAAEVVKHLSESHWNSSCI 158
           ++++++R  +P+  A + ++LIP+         K LS  H   +CI
Sbjct: 13  VSSIVLRIPSPEDPAAQPIILIPVWSKSNISSFKFLSIKHHKQTCI 150


>TC223611 weakly similar to UP|Q9LJ56 (Q9LJ56) Gb|AAD43149.1, partial (12%)
          Length = 463

 Score = 28.1 bits (61), Expect = 7.9
 Identities = 22/89 (24%), Positives = 38/89 (41%), Gaps = 1/89 (1%)
 Frame = +2

Query: 320 DVDICLRDLQESIDSQKEVEKALEQT-PSYTDINDEDIEEELEELELALEKEAQVDTLEK 378
           D  I L D +  I  Q ++    E   P   +  ++D+EE+ E+     E+    D+ E+
Sbjct: 179 DFGIDLSDRKAFIREQVDLFLQTEHNQPQQEERQNDDVEEQEEDAPNNPEQSQPSDSKEE 358

Query: 379 TTTSEEGNATLEASELLSDTLSNLKLSDR 407
           T   EEG    +  E   +   N   S++
Sbjct: 359 TDEEEEGEEEEDKPEQAKNAKKNKGRSNK 445


>TC234564 
          Length = 581

 Score = 28.1 bits (61), Expect = 7.9
 Identities = 21/72 (29%), Positives = 38/72 (52%)
 Frame = +1

Query: 325 LRDLQESIDSQKEVEKALEQTPSYTDINDEDIEEELEELELALEKEAQVDTLEKTTTSEE 384
           LR L++S+ ++ ++EK          I+   IEE+L++  ++LE+E  +   E T   E 
Sbjct: 76  LRMLEKSLANEIDLEKNF--------IDSRQIEEKLKQKMVSLEQELILMEEEATDACER 231

Query: 385 GNATLEASELLS 396
                 ASE+L+
Sbjct: 232 WLEADNASEILT 267


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.315    0.132    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,752,721
Number of Sequences: 63676
Number of extensions: 193397
Number of successful extensions: 1042
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of query: 429
length of database: 12,639,632
effective HSP length: 100
effective length of query: 329
effective length of database: 6,272,032
effective search space: 2063498528
effective search space used: 2063498528
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)


Medicago: description of AC137831.14