
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137831.14 + phase: 0
(429 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC226228 similar to UP|Q8L9C3 (Q8L9C3) Copia-like retroelement p... 61 1e-09
TC226231 similar to UP|Q8L9C3 (Q8L9C3) Copia-like retroelement p... 60 2e-09
TC226230 similar to UP|Q8L9C3 (Q8L9C3) Copia-like retroelement p... 49 6e-06
BU964405 weakly similar to GP|7110148|gb DNA repair-recombinatio... 34 0.11
TC208076 34 0.14
TC208060 weakly similar to UP|Q840B9 (Q840B9) Endo-b1,4-mannanas... 33 0.32
TC227389 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacety... 32 0.42
TC217713 similar to UP|Q9FI75 (Q9FI75) Similarity to 5'-nucleoti... 30 2.1
TC216950 30 2.7
BU760759 weakly similar to GP|14090380|dbj P0037C04.27 {Oryza sa... 29 4.7
TC204091 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1... 28 6.1
BG155252 28 6.1
TC223611 weakly similar to UP|Q9LJ56 (Q9LJ56) Gb|AAD43149.1, par... 28 7.9
TC234564 28 7.9
>TC226228 similar to UP|Q8L9C3 (Q8L9C3) Copia-like retroelement pol
polyprotein, partial (97%)
Length = 1094
Score = 60.8 bits (146), Expect = 1e-09
Identities = 40/178 (22%), Positives = 93/178 (51%), Gaps = 10/178 (5%)
Frame = +2
Query: 226 TIEKLQQQLDVIDRRCELSRKSAVASLHSG-------NRKLALRYARELKLVTQSREKCS 278
T++KL + L++++++ ++ K A + N++ A++ + +L Q E+
Sbjct: 272 TLDKLNETLEMLEKKEKVLLKKVAAEVEKAKEFTRGKNKRAAIQCLKRKRLYEQQIEQLG 451
Query: 279 SLLNRVEEVHGVVVDAESTKTVSEAMQIGARAIK--ENKISVEDVDICLRDLQESIDSQK 336
+ R+ + ++ A++T +A++ GA A+K + +++DVD + ++ E ++ K
Sbjct: 452 NFQLRIHDQMIMLEGAKATTETVDALRTGAAAMKAMQKATNIDDVDKTMDEINEQTENMK 631
Query: 337 EVEKALE-QTPSYTDINDEDIEEELEELELALEKEAQVDTLEKTTTSEEGNATLEASE 393
+++ AL + D +++++E ELEELE A E + L+ TT+ + A +
Sbjct: 632 QIQDALSAPIGAAADFDEDELEAELEELEGA---ELEEQLLQPATTAPAAPVQVPAGQ 796
>TC226231 similar to UP|Q8L9C3 (Q8L9C3) Copia-like retroelement pol
polyprotein, partial (97%)
Length = 1375
Score = 60.1 bits (144), Expect = 2e-09
Identities = 39/167 (23%), Positives = 94/167 (55%), Gaps = 11/167 (6%)
Frame = +1
Query: 227 IEKLQQQLDVIDRRCELSRKSAVASLHSG-------NRKLALRYARELKLVTQSREKCSS 279
+++L +L++++++ ++ K A A + N++ A++ + +L Q E+ +
Sbjct: 214 LDELNDKLEMLEKKEKVLLKKAAAEVEKAKEFTRAKNKRAAIQCLKRKRLYEQQIEQLGN 393
Query: 280 LLNRVEEVHGVVVDAESTKTVSEAMQIGARAIK--ENKISVEDVDICLRDLQESIDSQKE 337
R+ + ++ A++T +A++ GA A++ + + +++DVD + ++ E ++ K+
Sbjct: 394 FQLRIHDQMIMLEGAKATTETVDALRTGAAAMRAMQKETNIDDVDKTMDEINEQTENMKQ 573
Query: 338 VEKALEQTP--SYTDINDEDIEEELEELELALEKEAQVDTLEKTTTS 382
+++AL TP + D +++++E ELEELE A E + L+ TT+
Sbjct: 574 IQEAL-STPIGAAADFDEDELEAELEELEGA---ELEEQLLQPATTA 702
>TC226230 similar to UP|Q8L9C3 (Q8L9C3) Copia-like retroelement pol
polyprotein, partial (72%)
Length = 834
Score = 48.5 bits (114), Expect = 6e-06
Identities = 34/129 (26%), Positives = 65/129 (50%), Gaps = 3/129 (2%)
Frame = +2
Query: 268 KLVTQSREKCSSLLNRVEEVHGVVVDAESTKTVSEAMQIGARAIK--ENKISVEDVDICL 325
K Q E+ + R+ + ++ A++T A + GA AIK + +++DVD +
Sbjct: 23 KFSQQHLEQLGNFQLRIHDQMILLEGAKATTETRHAYRTGAAAIKAMQKATNIDDVDKTM 202
Query: 326 RDLQESIDSQKEVEKALE-QTPSYTDINDEDIEEELEELELALEKEAQVDTLEKTTTSEE 384
D+ E ++ K+++ AL + D +++++E ELEELE A E + L+ TT+
Sbjct: 203 DDINEQTENMKQIQDALSAPIGAAADFDEDELEAELEELEGA---ELEEQLLQPATTAPA 373
Query: 385 GNATLEASE 393
+ A +
Sbjct: 374 APVQVPAGQ 400
>BU964405 weakly similar to GP|7110148|gb DNA repair-recombination protein
{Arabidopsis thaliana}, partial (11%)
Length = 445
Score = 34.3 bits (77), Expect = 0.11
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 14/105 (13%)
Frame = +1
Query: 307 GARAIKENKISVEDVDICLRDLQESIDSQKEVEKALEQTPSYTDINDEDIEEEL------ 360
G R ++E ++ + + +LQ +D K+ ++ +E+ S + + EE
Sbjct: 64 GVRTLEEIQLELNTLQSTKENLQSELDRLKDEQRYMEKDLSSIQMRWHTVREEKTKATNI 243
Query: 361 --------EELELALEKEAQVDTLEKTTTSEEGNATLEASELLSD 397
EELE E++ QVD EK G + E +LL++
Sbjct: 244 LQGVKRLEEELERLTEEKTQVDLDEKHLADALGPLSKETDKLLAN 378
>TC208076
Length = 670
Score = 33.9 bits (76), Expect = 0.14
Identities = 15/60 (25%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +1
Query: 316 ISVEDVDICLRDLQESIDSQKEVEKALEQTPSY-TDINDEDIEEELEELELALEKEAQVD 374
+ ++D+D ++ + +D E+++ L ++ + DI+++D+ EL+ LEL + E + D
Sbjct: 22 VKIQDIDNLQDEMMDLMDVSNEIQETLGRSYNVPDDIDEDDLMGELDALELDMGNETEAD 201
>TC208060 weakly similar to UP|Q840B9 (Q840B9) Endo-b1,4-mannanase 26B, partial
(5%)
Length = 2230
Score = 32.7 bits (73), Expect = 0.32
Identities = 29/127 (22%), Positives = 61/127 (47%), Gaps = 22/127 (17%)
Frame = +1
Query: 317 SVEDVDICLRDLQESIDSQKEVEKAL-------EQTPSYTDIN-DEDIEE--ELEELELA 366
S+ED+++ + LQE +D ++ + ++ ++ + +IN D + E LE++ +A
Sbjct: 1378 SLEDINLAFKQLQEGVDVEEVINRSTIKDQNVGGESKDHLEINSDLQVVEARSLEDINIA 1557
Query: 367 LEKEAQ------------VDTLEKTTTSEEGNATLEASELLSDTLSNLKLSDRPVGKSRT 414
L + ++ DT K +E+G+A + +E + S+ ++S V KS
Sbjct: 1558 LNQVSEGNKGELPNSLDSKDTSVKVEENEDGSA--KVNEFFNVATSSEEMSRTTVDKSED 1731
Query: 415 THAASEG 421
+S G
Sbjct: 1732 VPNSSSG 1752
>TC227389 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
HD2-P39, partial (63%)
Length = 1144
Score = 32.3 bits (72), Expect = 0.42
Identities = 38/136 (27%), Positives = 59/136 (42%), Gaps = 4/136 (2%)
Frame = +3
Query: 295 ESTKTVSEAMQIG--ARAIKENKISVEDVDICLRDLQESIDSQKEVEKALEQTPSYTDIN 352
ES K V++A + ++ K + ED D D + S +E+E A + S +
Sbjct: 471 ESKKAVAKASGSAKQVKVVEPKKDNEEDSDDDSDD-DDFGSSDEEMEDA--DSDSDDESG 641
Query: 353 DEDIEEELEELELALEKEAQVDTLEKTTTSEEG--NATLEASELLSDTLSNLKLSDRPVG 410
DED +EE ++ L K+ ++ KT S + NAT E K + G
Sbjct: 642 DEDDDEETPPKKVDLGKKRPNESASKTPVSSKKAKNATPE------------KTDGKKGG 785
Query: 411 KSRTTHAASEGHKTAN 426
+ T H A +G KT N
Sbjct: 786 HTATPHPAKKGGKTPN 833
>TC217713 similar to UP|Q9FI75 (Q9FI75) Similarity to 5'-nucleotidase,
partial (36%)
Length = 1174
Score = 30.0 bits (66), Expect = 2.1
Identities = 16/66 (24%), Positives = 39/66 (58%), Gaps = 2/66 (3%)
Frame = +1
Query: 306 IGARAIKENKISVEDVDICLRDL--QESIDSQKEVEKALEQTPSYTDINDEDIEEELEEL 363
IG+R+ +E+ + + + + DL Q + Q+ + QT + T++NDED+ + +++L
Sbjct: 307 IGSRSYRESLVELINQKEIVGDLFNQLRLALQRRSKDRPAQTLAATNLNDEDLTDSMQKL 486
Query: 364 ELALEK 369
+ +++
Sbjct: 487 LIVMQR 504
>TC216950
Length = 873
Score = 29.6 bits (65), Expect = 2.7
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 9/109 (8%)
Frame = +2
Query: 291 VVDAESTKTVSEAMQIGAR-AIKENKISVE---DVDICLRDLQESIDSQKEVEKAL---- 342
+++ E+ K V EA++ ++K ++ VE ++ + L + + +Q E EK
Sbjct: 227 LIEEETAKRVEEAIRKRVEESLKSEEVQVEIERRLEEGRKRLNDEVAAQLEKEKEAALIE 406
Query: 343 -EQTPSYTDINDEDIEEELEELELALEKEAQVDTLEKTTTSEEGNATLE 390
+Q ED+E LEE +E+ + + LE+ EE LE
Sbjct: 407 AKQKEEQARKEKEDLERMLEENRRKVEEAQRREALEQQRREEERYKELE 553
>BU760759 weakly similar to GP|14090380|dbj P0037C04.27 {Oryza sativa
(japonica cultivar-group)}, partial (17%)
Length = 429
Score = 28.9 bits (63), Expect = 4.7
Identities = 17/61 (27%), Positives = 30/61 (48%)
Frame = +3
Query: 275 EKCSSLLNRVEEVHGVVVDAESTKTVSEAMQIGARAIKENKISVEDVDICLRDLQESIDS 334
+K LL +++ V+ V VDA+ K V A+ +K+ K + +IC E + +
Sbjct: 120 QKVKKLLQKIDGVYSVRVDADEGKVVVAGDVDPAKLVKKLKRGGKHAEICQNQKGEMMCN 299
Query: 335 Q 335
Q
Sbjct: 300 Q 302
>TC204091 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
(70%)
Length = 2075
Score = 28.5 bits (62), Expect = 6.1
Identities = 21/77 (27%), Positives = 37/77 (47%), Gaps = 4/77 (5%)
Frame = +2
Query: 330 ESIDSQKEVEKALEQTPSYTDINDEDIEEELEELELALEKEAQVDTLEKTTTSEEGNATL 389
E ++ + E E+ E+ + +ED EEE EE E+E + D +++ ++ +
Sbjct: 128 EEVEEEVEEEEVEEEVEEEEEEEEEDEEEEEEE----EEEEEENDVVKQQQQQQQDEDDI 295
Query: 390 EASELL----SDTLSNL 402
S+LL D L NL
Sbjct: 296 PISKLLEPLGKDQLLNL 346
>BG155252
Length = 341
Score = 28.5 bits (62), Expect = 6.1
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +1
Query: 113 MTNLIIRPATPDIMAEESVVLIPMLKDKAAEVVKHLSESHWNSSCI 158
++++++R +P+ A + ++LIP+ K LS H +CI
Sbjct: 13 VSSIVLRIPSPEDPAAQPIILIPVWSKSNISSFKFLSIKHHKQTCI 150
>TC223611 weakly similar to UP|Q9LJ56 (Q9LJ56) Gb|AAD43149.1, partial (12%)
Length = 463
Score = 28.1 bits (61), Expect = 7.9
Identities = 22/89 (24%), Positives = 38/89 (41%), Gaps = 1/89 (1%)
Frame = +2
Query: 320 DVDICLRDLQESIDSQKEVEKALEQT-PSYTDINDEDIEEELEELELALEKEAQVDTLEK 378
D I L D + I Q ++ E P + ++D+EE+ E+ E+ D+ E+
Sbjct: 179 DFGIDLSDRKAFIREQVDLFLQTEHNQPQQEERQNDDVEEQEEDAPNNPEQSQPSDSKEE 358
Query: 379 TTTSEEGNATLEASELLSDTLSNLKLSDR 407
T EEG + E + N S++
Sbjct: 359 TDEEEEGEEEEDKPEQAKNAKKNKGRSNK 445
>TC234564
Length = 581
Score = 28.1 bits (61), Expect = 7.9
Identities = 21/72 (29%), Positives = 38/72 (52%)
Frame = +1
Query: 325 LRDLQESIDSQKEVEKALEQTPSYTDINDEDIEEELEELELALEKEAQVDTLEKTTTSEE 384
LR L++S+ ++ ++EK I+ IEE+L++ ++LE+E + E T E
Sbjct: 76 LRMLEKSLANEIDLEKNF--------IDSRQIEEKLKQKMVSLEQELILMEEEATDACER 231
Query: 385 GNATLEASELLS 396
ASE+L+
Sbjct: 232 WLEADNASEILT 267
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.315 0.132 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,752,721
Number of Sequences: 63676
Number of extensions: 193397
Number of successful extensions: 1042
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of query: 429
length of database: 12,639,632
effective HSP length: 100
effective length of query: 329
effective length of database: 6,272,032
effective search space: 2063498528
effective search space used: 2063498528
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Medicago: description of AC137831.14