BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137829.8 - phase: 0
(123 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CD399787 similar to GP|24461860|gb CTV.20 {Poncirus trifoliata},... 171 8e-44
TC209975 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (9%) 28 0.81
TC233690 weakly similar to UP|Q6K393 (Q6K393) Ankyrin 3, epithel... 27 1.8
TC206099 similar to UP|O82161 (O82161) Phi-1 protein, partial (85%) 27 2.4
TC208261 similar to UP|Q818I6 (Q818I6) Phosphate transport syste... 27 3.1
TC227567 similar to UP|Q9MA20 (Q9MA20) T5E21.13, partial (15%) 26 4.0
TC225721 homologue to UP|Q7S1C8 (Q7S1C8) Predicted protein, part... 26 4.0
TC225719 26 4.0
TC212888 26 5.2
TC226370 similar to UP|Q9M0H8 (Q9M0H8) Predicted proline-rich pr... 26 5.2
TC226250 similar to UP|Q9SS90 (Q9SS90) F4P13.19 protein, partial... 25 6.8
TC204648 homologue to UP|Q9M5J4 (Q9M5J4) Beta galactosidase, com... 25 6.8
TC231660 similar to UP|Q8S3C8 (Q8S3C8) Dynamin-like protein C, p... 25 6.8
>CD399787 similar to GP|24461860|gb CTV.20 {Poncirus trifoliata}, partial
(2%)
Length = 600
Score = 171 bits (433), Expect = 8e-44
Identities = 85/107 (79%), Positives = 93/107 (86%)
Frame = -2
Query: 14 PNMDTSDWRGQLQPESRQRIVNKIMDTLKRHLPVSGQEGLHELRKIAQKFEDKIYTAATS 73
P MDTSDWR QL +SRQRIVNKIM TLK+HL VSG +GLHELRKIAQ+FEDKI+TAATS
Sbjct: 593 PTMDTSDWRAQLPIDSRQRIVNKIMKTLKKHLAVSGPDGLHELRKIAQRFEDKIFTAATS 414
Query: 74 QSDYLRKISLKMLTMETKSQGTIANNIPPNQVGPSNQPPYPGLHLRA 120
Q DYLRKISLKMLTMETKSQ T+ANN+PPNQVGPSN+PP HL A
Sbjct: 413 QPDYLRKISLKMLTMETKSQNTLANNMPPNQVGPSNKPPDQD*HLIA 273
>TC209975 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (9%)
Length = 537
Score = 28.5 bits (62), Expect = 0.81
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +1
Query: 101 PPNQVGPSNQPPYP 114
PPN + P++QPPYP
Sbjct: 262 PPNTLSPTSQPPYP 303
>TC233690 weakly similar to UP|Q6K393 (Q6K393) Ankyrin 3, epithelial isoform
a-like, partial (13%)
Length = 1024
Score = 27.3 bits (59), Expect = 1.8
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 77 YLRKISLKMLTMETKSQGTIANNIPPNQVGPSNQPPYPGLHLRALA 122
+ R + + L +Q + PP V + P PG+HLR LA
Sbjct: 332 HCRSLRRRQLRRRRHAQDRLHRPPPPPGVPQPSPPRLPGIHLRRLA 469
>TC206099 similar to UP|O82161 (O82161) Phi-1 protein, partial (85%)
Length = 1174
Score = 26.9 bits (58), Expect = 2.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 92 SQGTIANNIPPNQVGPSNQPPYP 114
S GT+A+++P P + PP+P
Sbjct: 268 SYGTVASSLPSEPSSPISSPPFP 336
>TC208261 similar to UP|Q818I6 (Q818I6) Phosphate transport system permease
protein pstA, partial (5%)
Length = 721
Score = 26.6 bits (57), Expect = 3.1
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +3
Query: 44 HLPVSGQEGLHELRKIAQKFEDKIYTAATSQSDYLRKISLKMLTMETKSQ----GTIAN- 98
H P + + L+ + A+K+ + S++ YL +S ++ ++ T+ N
Sbjct: 153 HSPATRFDSLYCMESSAEKYA--AFKQKVSRTVYLDNMSPQVTESVIRTALDQFATVKNV 326
Query: 99 NIPPNQVGPSNQP 111
PN +GPSNQP
Sbjct: 327 KFIPNYIGPSNQP 365
>TC227567 similar to UP|Q9MA20 (Q9MA20) T5E21.13, partial (15%)
Length = 1168
Score = 26.2 bits (56), Expect = 4.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 90 TKSQGTIANNIPPNQVGPSNQPPYPGL 116
++ Q +NN N +GP+ PP PG+
Sbjct: 697 SEDQNDASNNEAKNLLGPAAPPPRPGM 777
>TC225721 homologue to UP|Q7S1C8 (Q7S1C8) Predicted protein, partial (13%)
Length = 1010
Score = 26.2 bits (56), Expect = 4.0
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -1
Query: 84 KMLTMETKSQGTIANNIPPNQVGPSNQPPYPGLHLRA 120
K+ M + I N + NQ P PPYP L A
Sbjct: 779 KITIMTNQPTNHIMNCMSLNQANPPPPPPYPSLSFSA 669
>TC225719
Length = 1083
Score = 26.2 bits (56), Expect = 4.0
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -2
Query: 84 KMLTMETKSQGTIANNIPPNQVGPSNQPPYPGLHLRA 120
K+ M + I N + NQ P PPYP L A
Sbjct: 881 KITIMTNQPTNHIMNCMSLNQANPPPPPPYPSLSFSA 771
>TC212888
Length = 709
Score = 25.8 bits (55), Expect = 5.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 2 VTNNWRPNQGAEPNMDTSDWRGQLQPES 29
+TN+ ++ P M WRG+LQP+S
Sbjct: 414 LTNDVHRHRQVVPMMSKMMWRGRLQPKS 497
>TC226370 similar to UP|Q9M0H8 (Q9M0H8) Predicted proline-rich protein,
partial (43%)
Length = 1810
Score = 25.8 bits (55), Expect = 5.2
Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Frame = +2
Query: 22 RGQLQPESRQRIVNKIMDTLKRHLPV--SGQEGLHELRKIAQKFEDKIYTAATSQSDYLR 79
R ++ ESR + + K + + R + + QE +++A+ + ++++S S
Sbjct: 350 RDHVEQESRLKSLEKHVQEVHRSVQILRDKQELAETQKELAKLQLAQKESSSSSHSQSNE 529
Query: 80 KISLKMLTMETKSQGTIANNIP-----PNQVGPSNQPPYPGLHLRALA 122
+ S + + ANN P+Q+ P QPP P + +A A
Sbjct: 530 ERSSPTTDPKKTDNASDANNQQLALALPHQIAPQPQPPAPQVQAQAQA 673
>TC226250 similar to UP|Q9SS90 (Q9SS90) F4P13.19 protein, partial (68%)
Length = 1752
Score = 25.4 bits (54), Expect = 6.8
Identities = 9/26 (34%), Positives = 11/26 (41%)
Frame = +1
Query: 4 NNWRPNQGAEPNMDTSDWRGQLQPES 29
NNWR N + S W P+S
Sbjct: 121 NNWRQNSSVRSSSSASSWGSYPDPQS 198
>TC204648 homologue to UP|Q9M5J4 (Q9M5J4) Beta galactosidase, complete
Length = 2817
Score = 25.4 bits (54), Expect = 6.8
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +3
Query: 5 NWRPNQGAEPNMDTSDWRG 23
N++PN+ +P M T +W G
Sbjct: 777 NFKPNKNTKPKMWTENWTG 833
>TC231660 similar to UP|Q8S3C8 (Q8S3C8) Dynamin-like protein C, partial (29%)
Length = 762
Score = 25.4 bits (54), Expect = 6.8
Identities = 21/84 (25%), Positives = 35/84 (41%)
Frame = +1
Query: 36 KIMDTLKRHLPVSGQEGLHELRKIAQKFEDKIYTAATSQSDYLRKISLKMLTMETKSQGT 95
K TL + + E L + R+ ++K ++ +S Y L+ + E +
Sbjct: 382 KRFPTLSNDIATAANEALEKFREESRKTALQL---VDMESSYTTVEFLRNIHSEPEKNPN 552
Query: 96 IANNIPPNQVGPSNQPPYPGLHLR 119
N PN+ GP+N Y HLR
Sbjct: 553 GPPN--PNRNGPANMDSYTDDHLR 618
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.314 0.130 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,874,543
Number of Sequences: 63676
Number of extensions: 49749
Number of successful extensions: 234
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of query: 123
length of database: 12,639,632
effective HSP length: 85
effective length of query: 38
effective length of database: 7,227,172
effective search space: 274632536
effective search space used: 274632536
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)
Medicago: description of AC137829.8