TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137826.3 - phase: 0 /pseudo
         (1546 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NP595172 polyprotein [Glycine max]                                     57  8e-08
NP334778 reverse transcriptase [Glycine max]                           32  2.8
CK606514                                                               30  8.2
BG156610 weakly similar to GP|9828614|gb|A F1N21.3 {Arabidopsis ...    30  8.2

>NP595172 polyprotein [Glycine max]
          Length = 4659

 Score = 56.6 bits (135), Expect = 8e-08
 Identities = 56/217 (25%), Positives = 95/217 (42%), Gaps = 22/217 (10%)
 Frame = +1

Query: 740  DSSMIMCKDYRQLNRVTTRNKYTLPLIDDLFNQLWRASFL*DYSKVCLPLVKN*A*GCTK 799
            D S   C DYR LN +T ++ + +P +D+L ++L  A +   +SK+ L           +
Sbjct: 1930 DGSWRFCTDYRALNAITVKDSFPMPTVDELLDELHGAQY---FSKLDL-----------R 2067

Query: 800  KGIQDPLWAL*VSSDIVWVDKCSFGCHE------------------FD*LCD---QMTLG 838
             G    L    V  +    +K +F  H                   F  L +   Q  L 
Sbjct: 2068 SGYHQIL----VQPEDR--EKTAFRTHHGHYEWLVMPFGLTNAPATFQCLMNKIFQFALR 2229

Query: 839  FILIVCVDDILLFLESK*DKVDHLCIV*DVHGRQKLYA*FLSVSFC*LQLP-IGNVVMNE 897
              ++V  DDIL++  S  D + HL  V     + +L+A     SF   ++  +G+ V   
Sbjct: 2230 KFVLVFFDDILIYSASWKDHLKHLESVLQTLKQHQLFARLSKCSFGDTEVDYLGHKVSGL 2409

Query: 898  RIMVDLQNIEPVMNWV*PSFVIESRGFMGLASYYRGF 934
             + ++   ++ V++W  P+ V + RGF+GL  YYR F
Sbjct: 2410 GVSMENTKVQAVLDWPTPNNVKQLRGFLGLTGYYRRF 2520


>NP334778 reverse transcriptase [Glycine max]
          Length = 431

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +3

Query: 745 MCKDYRQLNRVTTRNKYTLPLIDDLFNQLWRASF 778
           MC DYR LNR + ++ + LP ID L   +  ASF
Sbjct: 6   MCVDYRDLNRASPKDNFPLPHIDILMANM--ASF 101


>CK606514 
          Length = 280

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 15/35 (42%), Positives = 23/35 (64%), Gaps = 2/35 (5%)
 Frame = +3

Query: 27 RSLFKGRERGRVEQA--RGGAPFEKSPREKAPYAP 59
          ++L KG++RG++  A  RGG   +K PRE  P +P
Sbjct: 60 QNLKKGKKRGKIFWAKKRGGGGGKKKPRETPPISP 164


>BG156610 weakly similar to GP|9828614|gb|A F1N21.3 {Arabidopsis thaliana},
           partial (23%)
          Length = 293

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 13/42 (30%), Positives = 19/42 (44%)
 Frame = +1

Query: 405 YNCGDFRHISRYCPKPRILDLMQK*TRAVVPASNDKNSRGHP 446
           +NCG + H  R CP+PR    +      +    N  +S  HP
Sbjct: 55  FNCGSYNHSLRECPRPRDNIAVNNARDKLKSRRNQNSSSRHP 180


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.359    0.161    0.583 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,009,100
Number of Sequences: 63676
Number of extensions: 1125316
Number of successful extensions: 10553
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5581
Number of HSP's successfully gapped in prelim test: 378
Number of HSP's that attempted gapping in prelim test: 4770
Number of HSP's gapped (non-prelim): 6384
length of query: 1546
length of database: 12,639,632
effective HSP length: 110
effective length of query: 1436
effective length of database: 5,635,272
effective search space: 8092250592
effective search space used: 8092250592
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 65 (29.6 bits)