BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137825.14 + phase: 0
(552 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC211834 205 5e-53
TC208154 similar to GB|AAP68273.1|31711834|BT008834 At3g54290 {A... 36 0.039
TC227390 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacety... 33 0.33
TC235163 similar to UP|Q9XYL1 (Q9XYL1) Development protein DG110... 33 0.43
BE659070 homologue to SP|O17449|TBB1 Tubulin beta-1 chain (Beta-... 33 0.43
BU926431 32 0.56
TC208789 similar to UP|Q9SBQ1 (Q9SBQ1) MADS box transcription fa... 31 1.3
TC210776 similar to UP|Q8H6B1 (Q8H6B1) Global transcription fact... 30 3.7
TC223611 weakly similar to UP|Q9LJ56 (Q9LJ56) Gb|AAD43149.1, par... 30 3.7
TC207045 homologue to GB|AAP42741.1|30984556|BT008728 At3g58120 ... 30 3.7
TC218918 UP|Q39892 (Q39892) Nucleosome assembly protein 1, complete 29 4.8
TC227389 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacety... 29 4.8
TC204851 similar to GB|AAM16178.1|20334844|AY094022 AT3g12390/T2... 29 6.2
TC220628 weakly similar to UP|Q6FSJ1 (Q6FSJ1) Similarities with ... 28 8.1
TC231046 28 8.1
BI969720 weakly similar to GP|28208268|dbj squalene synthase {Lo... 28 8.1
>TC211834
Length = 773
Score = 205 bits (521), Expect = 5e-53
Identities = 121/257 (47%), Positives = 159/257 (61%), Gaps = 37/257 (14%)
Frame = +3
Query: 300 EVDSILSVSAQTNQIIQDLLPDYEFDQGFTDAYMEEQSEDSDNESDKDEDDSQC------ 353
EVD IL++SA T QI+ DLLPD E D+ FTDAY E+ E + SD D++DSQ
Sbjct: 3 EVDCILNMSALTKQIVLDLLPDDELDKDFTDAYSEQLEESDYSSSDDDDNDSQLVEDIQF 182
Query: 354 -----------------------SENSLHCSVTPSECLNSDSDK----NCDTINLESKMR 386
EN +T S+ LNS S++ NCDT++L+SK+
Sbjct: 183 RNGTSGSMYSFCKGESIGEFVPFEENVSSSPLTTSDKLNSGSEQHQANNCDTVDLDSKVH 362
Query: 387 NTPYN---NQCQEEITEQFSTPMSRKNCDSSAVSLDKEPDENIVKRHEFHESYTEAAPRD 443
NT N +QCQ E TE F T M+ KN +SS +S D+E DEN+VKR+EF ES + D
Sbjct: 363 NTQCNIFTDQCQRESTEIFHTFMACKNNNSSVISPDRELDENVVKRNEFSESDAKVDATD 542
Query: 444 KSN-FCEEKKPIPTKYSGHKNQYLAAQDACDKTSMLAYNLIGRMLEEFAIAEDLNLDLSK 502
++ FC+EK+P+PTK S KNQYLA QDACDKTSMLAYNLIG +LEEF + E L+L+LSK
Sbjct: 543 TTDLFCKEKEPMPTKCSECKNQYLAIQDACDKTSMLAYNLIGHLLEEFVMIEGLDLNLSK 722
Query: 503 RSYLNCDKQSEDIKETE 519
YL + + ED++E +
Sbjct: 723 SLYLTGNNRIEDVEEEQ 773
>TC208154 similar to GB|AAP68273.1|31711834|BT008834 At3g54290 {Arabidopsis
thaliana;} , partial (46%)
Length = 1519
Score = 36.2 bits (82), Expect = 0.039
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
Frame = +3
Query: 171 PLANAMSVADFSLKLIIGFGSTFLEECYQFSPEVKSLQSDIMQAILSVEKKEVVPLPVLR 230
PL N + S+ ++ + E Y S +KSLQ Q ++EV LP+++
Sbjct: 816 PLMNGIKEVIKSVGVLDSGSPDYHEALYSLSSRLKSLQGQCKQHFA---EEEVELLPLMK 986
Query: 231 ELQLLIEPKATVVNK--SLRKAFVNLLTEFLFECSDMNSTPKSLLQILDVINKCSNKSTH 288
L+L E + + + + + L +FL P ++ LD+I+KC +K
Sbjct: 987 ALELSKEQ*VSALEQCFDVMQGTHGRLLKFLLX----GLPPHDAMKYLDLISKCRDKEKM 1154
Query: 289 DVTLQK 294
+ LQK
Sbjct: 1155ESMLQK 1172
>TC227390 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
HD2-P39, partial (24%)
Length = 808
Score = 33.1 bits (74), Expect = 0.33
Identities = 15/32 (46%), Positives = 20/32 (61%)
Frame = +1
Query: 321 DYEFDQGFTDAYMEEQSEDSDNESDKDEDDSQ 352
D + D G +D ME+ DSD+ESD EDD +
Sbjct: 199 DEDDDFGSSDEEMEDADSDSDDESDDKEDDDE 294
>TC235163 similar to UP|Q9XYL1 (Q9XYL1) Development protein DG1106
(Fragment), partial (5%)
Length = 927
Score = 32.7 bits (73), Expect = 0.43
Identities = 49/233 (21%), Positives = 94/233 (40%), Gaps = 32/233 (13%)
Frame = +3
Query: 241 TVVNKSLRKAFVNLLTEFLFECSDMNSTPKSLLQILDVINKCSNKSTHDVTLQKEHIEEE 300
+V+ S R +FVN + +F+ + +MN T + D+ N S + + D+ E
Sbjct: 63 SVILGSSRSSFVNTICKFVRDVDEMNETVMIPSLLTDLNNNSSTQPSTDL--------PE 218
Query: 301 VDSILSVSAQTNQIIQDL-LPDYEFDQ----GFTDA--------YMEEQSEDSDNESDKD 347
+ ++ N++ +L + +E DQ FT A + +S+N ++ +
Sbjct: 219 CFDLQTLHQLLNRLKDELTIARFEDDQSKSCNFTSANNILSINNCNNNINNNSNNTNNNN 398
Query: 348 EDDSQCSENSLHCSVT-------------------PSECLNSDSDKNCDTINLESKMRNT 388
+++Q + NS + S T S C SDSD ++N S+
Sbjct: 399 RNNNQINVNS-NVSTTGGTPLRIAEGDLSGLSKKLSSSCKCSDSDDGFSSLNSYSR---- 563
Query: 389 PYNNQCQEEITEQFSTPMSRKNCDSSAVSLDKEPDENIVKRHEFHESYTEAAP 441
N E + S+ + C SS+ + P+++ E S E++P
Sbjct: 564 ---NSDDESTSSSPSSDSDSECCSSSSSTSSSTPNQS----RENEPSIAESSP 701
>BE659070 homologue to SP|O17449|TBB1 Tubulin beta-1 chain (Beta-1 tubulin).
[Tobacco hawkmoth Tobacco hornworm] {Manduca sexta},
partial (30%)
Length = 705
Score = 32.7 bits (73), Expect = 0.43
Identities = 13/42 (30%), Positives = 23/42 (53%)
Frame = -2
Query: 332 YMEEQSEDSDNESDKDEDDSQCSENSLHCSVTPSECLNSDSD 373
Y + Q +D +++ DED + ++ +HCS PS + S D
Sbjct: 359 YQQYQEATADEDAEFDEDQEEVEQD*IHCSFYPSSAICSAHD 234
>BU926431
Length = 457
Score = 32.3 bits (72), Expect = 0.56
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 321 DYEFDQGFTDAYMEEQSEDSDNESDKDEDDSQCSEN 356
D + D+ FTD EE+S++ + E+ +DE+ EN
Sbjct: 297 DTDHDEEFTDEEKEEESDEKEKENSRDEEKDGSVEN 404
>TC208789 similar to UP|Q9SBQ1 (Q9SBQ1) MADS box transcription factor,
partial (72%)
Length = 995
Score = 31.2 bits (69), Expect = 1.3
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +3
Query: 373 DKNCDTINLESKMRNTPYNNQ-CQEEITEQFSTPMSRKNCDSSAVSLDKEPDENIVKRHE 431
D + I +K + Y+NQ C E I E++ + V D+ P+EN V HE
Sbjct: 336 DADVALIVFSTKGKLLDYSNQPCTERILERYER---YSYAERQLVGDDQPPNENWVIEHE 506
Query: 432 FHESYTEAAPRDKSNFCEE 450
++ E R++ NF E
Sbjct: 507 KLKARVEVLQRNQRNFMGE 563
>TC210776 similar to UP|Q8H6B1 (Q8H6B1) Global transcription factor group C
102, partial (12%)
Length = 411
Score = 29.6 bits (65), Expect = 3.7
Identities = 17/70 (24%), Positives = 35/70 (49%)
Frame = +1
Query: 317 DLLPDYEFDQGFTDAYMEEQSEDSDNESDKDEDDSQCSENSLHCSVTPSECLNSDSDKNC 376
D+ P+ + + +D+ +SED D++ + E+DS+ E E N+D +K
Sbjct: 142 DVEPESDSEDEASDSESLVESEDDDDDDEDSEEDSE-EEKGKTWEELEREASNADREKGN 318
Query: 377 DTINLESKMR 386
++ + E + R
Sbjct: 319 ESDSEEDRKR 348
>TC223611 weakly similar to UP|Q9LJ56 (Q9LJ56) Gb|AAD43149.1, partial (12%)
Length = 463
Score = 29.6 bits (65), Expect = 3.7
Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 1/144 (0%)
Frame = +2
Query: 232 LQLLIEPKATVVNKSLRKAFVNLLTEFLFECSDMNSTPKSLLQILDVINKCSNKSTHDVT 291
L LL+ P + + L EFL SD+N+T + ++ + D++
Sbjct: 56 LPLLLSPMVS------ESELIGRLREFL-RSSDLNTTTTATVR-----RQLEADFGIDLS 199
Query: 292 LQKEHIEEEVDSILSVSAQTNQIIQDLLPDYEFDQGFTDAYME-EQSEDSDNESDKDEDD 350
+K I E+VD L + + NQ Q+ + + ++ DA EQS+ SD++ + DE++
Sbjct: 200 DRKAFIREQVD--LFLQTEHNQPQQEERQNDDVEEQEEDAPNNPEQSQPSDSKEETDEEE 373
Query: 351 SQCSENSLHCSVTPSECLNSDSDK 374
E P + N+ +K
Sbjct: 374 EGEEEED-----KPEQAKNAKKNK 430
>TC207045 homologue to GB|AAP42741.1|30984556|BT008728 At3g58120 {Arabidopsis
thaliana;} , partial (33%)
Length = 1568
Score = 29.6 bits (65), Expect = 3.7
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 334 EEQSEDSDNESDKDEDDSQCSENSLHCSVTPSECLNSDSDKNCDTIN 380
EE + NES++DED+SQC + ++ N+D N N
Sbjct: 14 EEGKKQVKNESEEDEDESQCKQEI-------TQLPNNDDSNNTSNAN 133
>TC218918 UP|Q39892 (Q39892) Nucleosome assembly protein 1, complete
Length = 1507
Score = 29.3 bits (64), Expect = 4.8
Identities = 22/80 (27%), Positives = 37/80 (45%), Gaps = 4/80 (5%)
Frame = +1
Query: 277 DVINKCSNKSTHDV----TLQKEHIEEEVDSILSVSAQTNQIIQDLLPDYEFDQGFTDAY 332
D+ + N+ D TL+ + I V +AQ ++ +DL D + +
Sbjct: 868 DLAEELQNQMEQDYDIGSTLRDKIIPHAVSWFTGEAAQGDEF-EDLEDDEDEE------- 1023
Query: 333 MEEQSEDSDNESDKDEDDSQ 352
E++ ED D E D+DEDD +
Sbjct: 1024-EDEDEDEDEEDDEDEDDEE 1080
>TC227389 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
HD2-P39, partial (63%)
Length = 1144
Score = 29.3 bits (64), Expect = 4.8
Identities = 12/28 (42%), Positives = 18/28 (63%)
Frame = +3
Query: 325 DQGFTDAYMEEQSEDSDNESDKDEDDSQ 352
D G +D ME+ DSD+ES ++DD +
Sbjct: 579 DFGSSDEEMEDADSDSDDESGDEDDDEE 662
>TC204851 similar to GB|AAM16178.1|20334844|AY094022 AT3g12390/T2E22_130
{Arabidopsis thaliana;} , partial (86%)
Length = 868
Score = 28.9 bits (63), Expect = 6.2
Identities = 23/98 (23%), Positives = 43/98 (43%)
Frame = +2
Query: 289 DVTLQKEHIEEEVDSILSVSAQTNQIIQDLLPDYEFDQGFTDAYMEEQSEDSDNESDKDE 348
D LQ + + S+ +++ QT + +LL + Q D +E + DN+ ++D+
Sbjct: 20 DPLLQNPVCDTKSKSLFTMTTQTQE---ELLAQHLEQQKIHD---DEPVAEDDNDEEEDD 181
Query: 349 DDSQCSENSLHCSVTPSECLNSDSDKNCDTINLESKMR 386
DD + E+ H ++ L D+ E K R
Sbjct: 182 DDDEDDEDDDH-----ADGLEGDASGRSKQTRSEKKSR 280
>TC220628 weakly similar to UP|Q6FSJ1 (Q6FSJ1) Similarities with sp|P47179
Saccharomyces cerevisiae YJR151c, partial (9%)
Length = 830
Score = 28.5 bits (62), Expect = 8.1
Identities = 13/40 (32%), Positives = 22/40 (54%), Gaps = 2/40 (5%)
Frame = +2
Query: 321 DYEFDQGFTDAYMEEQSEDSDNESD--KDEDDSQCSENSL 358
DYE++QG Y EQ E+ +N+ + +E+D N +
Sbjct: 509 DYEYEQGEEGYYEYEQGEEGENQEEDYMEEEDGDDFANKI 628
>TC231046
Length = 959
Score = 28.5 bits (62), Expect = 8.1
Identities = 26/125 (20%), Positives = 50/125 (39%), Gaps = 12/125 (9%)
Frame = +1
Query: 343 ESDKDEDDSQCSENSLHCSVTPSECLNSDSDKNC-----DTINLESKMRN-TPYNNQCQE 396
E++K +++ +E + + SE N + +T+ LES + NNQ E
Sbjct: 112 EAEKPSEETHINEPAKEIMIVESEAENPSKETLVNEPAKETVKLESDAEKPSEENNQSSE 291
Query: 397 EITEQFSTPMSRKNCDSSAVSLDK------EPDENIVKRHEFHESYTEAAPRDKSNFCEE 450
+ E+F M + ++ ++ K EP E E ++ +E + E
Sbjct: 292 SLKEEFVEAMEAPSEETQSIEPIKLKEEPIEPSEEGKPSGESEKNASETKTLIVESINSE 471
Query: 451 KKPIP 455
P+P
Sbjct: 472 VAPVP 486
>BI969720 weakly similar to GP|28208268|dbj squalene synthase {Lotus
japonicus}, partial (14%)
Length = 677
Score = 28.5 bits (62), Expect = 8.1
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 128 IKAPMPQLQPFKNGWGRN 145
IK P Q +P KNGWG N
Sbjct: 168 IKKPKSQREPSKNGWGAN 221
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.314 0.131 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,265,656
Number of Sequences: 63676
Number of extensions: 288614
Number of successful extensions: 1277
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of query: 552
length of database: 12,639,632
effective HSP length: 102
effective length of query: 450
effective length of database: 6,144,680
effective search space: 2765106000
effective search space used: 2765106000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)
Medicago: description of AC137825.14