BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137825.12 - phase: 0 /pseudo
(451 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC218736 similar to UP|CV4L_HUMAN (Q9NU19) TBC1 domain family pr... 547 e-156
TC210641 weakly similar to UP|Q6PUR3 (Q6PUR3) C22orf4-like prote... 189 5e-65
AW156525 125 9e-37
TC218735 144 1e-34
BI470585 135 3e-32
BI699898 129 3e-30
CA783379 119 3e-27
AI856210 84 2e-24
TC219476 81 8e-16
TC224940 similar to UP|Q6ZFZ1 (Q6ZFZ1) GTPase activating protein... 72 5e-13
BE057658 67 2e-11
TC218247 similar to UP|Q9FFV0 (Q9FFV0) Similarity to GTPase acti... 60 2e-09
TC224893 59 3e-09
TC224866 similar to UP|Q6ZFZ1 (Q6ZFZ1) GTPase activating protein... 56 4e-08
BI968908 54 1e-07
BF425319 53 2e-07
TC218793 weakly similar to UP|Q7KVQ0 (Q7KVQ0) CG4038-PA, partial... 47 2e-05
TC218792 homologue to UP|O44991 (O44991) Lipid depleted protein ... 47 2e-05
TC213452 similar to UP|Q6Z973 (Q6Z973) GTPase activator protein-... 41 0.001
TC221527 similar to UP|O81347 (O81347) Plant adhesion molecule 1... 40 0.002
>TC218736 similar to UP|CV4L_HUMAN (Q9NU19) TBC1 domain family protein
C6orf197, partial (23%)
Length = 1212
Score = 547 bits (1409), Expect = e-156
Identities = 271/331 (81%), Positives = 293/331 (87%)
Frame = +2
Query: 9 HERNNNNNNTVTTLDSRFSQTLRNVQGLLKGRSMPGKVLMSRRSEPSDNLNSKVSSTFYK 68
++R + N TTLDSRF+QTLRNVQGLLKGRS+PGK+L+SRR +P DN NSK+SS YK
Sbjct: 68 NKRQEDLRNIATTLDSRFNQTLRNVQGLLKGRSIPGKILLSRRVDPPDNSNSKISSPNYK 247
Query: 69 RSFSHNDAGTSDQISGAVEEEVQSTSKSVSAANVSKLKSSTSLGENLSEDIRKYTIGARA 128
RSFSHNDAGTSD SGAVEEE QS SK +S AN +KLK STSLG + E+ K T+GARA
Sbjct: 248 RSFSHNDAGTSDNTSGAVEEEFQSKSKPISIANANKLKVSTSLGGSPPEEFHKSTMGARA 427
Query: 129 TDSARVTKFNKVLSGTVVILDNLRELAWSGVPDYMRPKVWRLLLGYEPPNSDRKEGVLGR 188
TDSAR+ KF KVLSGTVVILD LRELAWSGVPD MRPKVWRLLLGY PPNSDR+EGVL R
Sbjct: 428 TDSARIMKFTKVLSGTVVILDKLRELAWSGVPDNMRPKVWRLLLGYAPPNSDRREGVLRR 607
Query: 189 KRGEYLDCISQYYDIPDSERSDDEVNMLRQIAVDCPRTVPDVTFFQQQQVQKSLERILYA 248
KR EYLDCISQYYDIPD+ERSDDEVNML QI +DCPRTVPDV FFQQQQVQKSLERILYA
Sbjct: 608 KRLEYLDCISQYYDIPDTERSDDEVNMLHQIGIDCPRTVPDVPFFQQQQVQKSLERILYA 787
Query: 249 WAIRHPASGYVQGINDLVTPFLVVFISEHLEGGIDDWSMSDLSSDKISNVEADCYWCLSK 308
WAIRHPASGYVQGINDLVTPFLVVF+SEH EG I++WSMSDLSSD ISN+EADCYWCLSK
Sbjct: 788 WAIRHPASGYVQGINDLVTPFLVVFLSEHFEGDINNWSMSDLSSDIISNIEADCYWCLSK 967
Query: 309 LLDGMQDHYTFAQPGIQRLVFKLKELVRRID 339
LLDGMQDHYTFAQPGIQRLVFKLKELVRRID
Sbjct: 968 LLDGMQDHYTFAQPGIQRLVFKLKELVRRID 1060
>TC210641 weakly similar to UP|Q6PUR3 (Q6PUR3) C22orf4-like protein, partial
(14%)
Length = 707
Score = 189 bits (479), Expect(2) = 5e-65
Identities = 89/98 (90%), Positives = 94/98 (95%)
Frame = +1
Query: 305 CLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPISQHIEDQGLEFLQFAFRWFNCL 364
CLSKLLD MQDHYTFAQPGIQRLVFKLKELVRRID+P+S H+E+QGLEFLQFAFRWFNCL
Sbjct: 1 CLSKLLDSMQDHYTFAQPGIQRLVFKLKELVRRIDDPVSNHMEEQGLEFLQFAFRWFNCL 180
Query: 365 LIREIPFDLITRLWDTYLAEGDALPDFLVYIFASFLLT 402
LIREIPF L+TRLWDTYLAEGDALPDFLVYI ASFLLT
Sbjct: 181 LIREIPFHLVTRLWDTYLAEGDALPDFLVYISASFLLT 294
Score = 77.8 bits (190), Expect(2) = 5e-65
Identities = 37/48 (77%), Positives = 40/48 (83%)
Frame = +2
Query: 403 TNSRGWNSRSW*CSFNTFQLRTGLTRTSRWCFPGHLCGTACSTTLQAI 450
T SR S+SW*CSFNTFQLRTGLTR+SRW F HLCGTACSTTL+ I
Sbjct: 302 TISRSLISKSW*CSFNTFQLRTGLTRSSRWYFLVHLCGTACSTTLRVI 445
>AW156525
Length = 338
Score = 125 bits (313), Expect(2) = 9e-37
Identities = 62/88 (70%), Positives = 70/88 (79%)
Frame = +3
Query: 245 ILYAWAIRHPASGYVQGINDLVTPFLVVFISEHLEGGIDDWSMSDLSSDKISNVEADCYW 304
IL WAIRH ASGYV GINDLVTPFLVVF+S++ GGID+WSMSDLSS +ISNV ADCYW
Sbjct: 6 ILNTWAIRHAASGYVHGINDLVTPFLVVFLSQY**GGIDNWSMSDLSSHEISNV*ADCYW 185
Query: 305 CLSKLLDGMQDHYTFAQPGIQRLVFKLK 332
LSKLLD +QDHYT AQ + F L+
Sbjct: 186 GLSKLLDSLQDHYTCAQHSTPKACF*LE 269
Score = 47.0 bits (110), Expect(2) = 9e-37
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = +1
Query: 324 IQRLVFKLKELVRRIDEPISQHIEDQGLEFL 354
++RL F KELV RID+P+S H+E+QGLEFL
Sbjct: 244 LRRLAFNSKELVMRIDDPVSNHMEEQGLEFL 336
>TC218735
Length = 366
Score = 144 bits (362), Expect = 1e-34
Identities = 78/121 (64%), Positives = 89/121 (73%), Gaps = 2/121 (1%)
Frame = +3
Query: 89 EVQSTSKSVSAANVSKLKSSTSLGENLSEDIRKYTIGARATDSARVTKFNKVLSGTVVIL 148
EV STSK N +KLK S S E+ SE++RK ++GARATDSARV KF KVLS T+V L
Sbjct: 3 EVHSTSKPFGIPNENKLKISASNVESSSEELRKSSMGARATDSARVMKFTKVLSETMVKL 182
Query: 149 DNLRELAWSGVPDYMRPKVWRLLLGYEPPNSDRKEGVLGRKRGEYLD-CISQYYD-IPDS 206
+ LRE +W GVPDYMRP VWRLLLGY PPNSDR+EGVL RKR EYLD C D PD+
Sbjct: 183 EKLREFSWRGVPDYMRPTVWRLLLGYAPPNSDRREGVLKRKRLEYLDWCFFSIMDNFPDT 362
Query: 207 E 207
E
Sbjct: 363 E 365
>BI470585
Length = 422
Score = 135 bits (341), Expect = 3e-32
Identities = 69/85 (81%), Positives = 73/85 (85%)
Frame = +3
Query: 104 KLKSSTSLGENLSEDIRKYTIGARATDSARVTKFNKVLSGTVVILDNLRELAWSGVPDYM 163
KLK STSLG + E+ RK T+GARATDSARV KF KVLSGTVVILD LRELAWSGVPD M
Sbjct: 168 KLKVSTSLGGSPPEEFRKSTMGARATDSARVMKFTKVLSGTVVILDKLRELAWSGVPDNM 347
Query: 164 RPKVWRLLLGYEPPNSDRKEGVLGR 188
RPKVWRLLLGY PPNSDR+EGVL R
Sbjct: 348 RPKVWRLLLGYAPPNSDRREGVLRR 422
Score = 93.2 bits (230), Expect = 2e-19
Identities = 50/75 (66%), Positives = 57/75 (75%), Gaps = 1/75 (1%)
Frame = +1
Query: 38 KGRSMPGKVLMSRRSEPSDNLNSKVSSTFYKRSFSHNDAGTSDQISGAVEEEVQSTS-KS 96
KGRS+PGK+L+SRR +P DN NSK SS YKRSFSHNDAGTSD SGAVEEE QSTS K
Sbjct: 1 KGRSIPGKILLSRRVDPPDNSNSKASSPNYKRSFSHNDAGTSDHTSGAVEEEFQSTS*KC 180
Query: 97 VSAANVSKLKSSTSL 111
++LK+S SL
Sbjct: 181 RPPLEGARLKNSVSL 225
>BI699898
Length = 421
Score = 129 bits (324), Expect = 3e-30
Identities = 59/70 (84%), Positives = 63/70 (89%)
Frame = +3
Query: 249 WAIRHPASGYVQGINDLVTPFLVVFISEHLEGGIDDWSMSDLSSDKISNVEADCYWCLSK 308
WAIRHPASGYVQGINDLVT FLVVF E+ EG ID+WSMSDLSSD ISN+E DCYWCLSK
Sbjct: 210 WAIRHPASGYVQGINDLVTLFLVVF*LEYFEGDIDNWSMSDLSSDVISNIEVDCYWCLSK 389
Query: 309 LLDGMQDHYT 318
L+DGMQDHYT
Sbjct: 390 LIDGMQDHYT 419
>CA783379
Length = 455
Score = 119 bits (298), Expect = 3e-27
Identities = 55/64 (85%), Positives = 60/64 (92%)
Frame = +3
Query: 186 LGRKRGEYLDCISQYYDIPDSERSDDEVNMLRQIAVDCPRTVPDVTFFQQQQVQKSLERI 245
L RK EYLDC+SQYYDIPD+ERSDDE+NMLRQIAVDCPRTVP+V+FFQQQQVQKSLERI
Sbjct: 3 LKRKPLEYLDCVSQYYDIPDTERSDDEINMLRQIAVDCPRTVPEVSFFQQQQVQKSLERI 182
Query: 246 LYAW 249
LY W
Sbjct: 183 LYTW 194
>AI856210
Length = 464
Score = 84.0 bits (206), Expect(2) = 2e-24
Identities = 38/49 (77%), Positives = 43/49 (87%)
Frame = +1
Query: 333 ELVRRIDEPISQHIEDQGLEFLQFAFRWFNCLLIREIPFDLITRLWDTY 381
EL+RRIDEP+S HIEDQ LEFLQFAF WFN L+I EIPF L+TRLWDT+
Sbjct: 1 ELIRRIDEPVSWHIEDQRLEFLQFAFCWFNYLVIHEIPFLLVTRLWDTF 147
Score = 46.6 bits (109), Expect(2) = 2e-24
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = +2
Query: 380 TYLAEGDALPDFLVYIFASFLLTTN 404
T+LAEGDAL DFLVYIFASFLLT N
Sbjct: 140 THLAEGDALADFLVYIFASFLLTVN 214
>TC219476
Length = 899
Score = 81.3 bits (199), Expect = 8e-16
Identities = 40/59 (67%), Positives = 45/59 (75%), Gaps = 1/59 (1%)
Frame = +3
Query: 393 VYIFASFLL-TTNSRGWNSRSW*CSFNTFQLRTGLTRTSRWCFPGHLCGTACSTTLQAI 450
+Y+ ASF TNSR S++W*C FNTFQ RTGLTR+ RWCFP HLCGT CSTTL AI
Sbjct: 450 IYLPASF*RGQTNSRNLISKNW*CFFNTFQQRTGLTRSLRWCFPEHLCGTPCSTTLLAI 626
Score = 70.9 bits (172), Expect = 1e-12
Identities = 33/38 (86%), Positives = 35/38 (91%)
Frame = +2
Query: 369 IPFDLITRLWDTYLAEGDALPDFLVYIFASFLLTTNSR 406
IPF LITRLWDTYLAEGDALPDFLVYIFASFLLT + +
Sbjct: 374 IPFHLITRLWDTYLAEGDALPDFLVYIFASFLLTWSDK 487
Score = 66.2 bits (160), Expect = 3e-11
Identities = 28/35 (80%), Positives = 33/35 (94%)
Frame = +1
Query: 340 EPISQHIEDQGLEFLQFAFRWFNCLLIREIPFDLI 374
EP+S+HIEDQGLEFLQFAFRWFNCLLIRE+ D++
Sbjct: 136 EPVSRHIEDQGLEFLQFAFRWFNCLLIREVCKDIL 240
>TC224940 similar to UP|Q6ZFZ1 (Q6ZFZ1) GTPase activating protein-like,
partial (66%)
Length = 1783
Score = 72.0 bits (175), Expect = 5e-13
Identities = 62/244 (25%), Positives = 108/244 (43%), Gaps = 7/244 (2%)
Frame = +2
Query: 143 GTVVILDNLRELAWSGVPDY-MRPKVWRLLLGYEPPNSD--RKEGVLGRKRGEYLDCISQ 199
G V + LR+ + G D+ ++ +VW LLLGY P S +E + K+ EY + +Q
Sbjct: 734 GRVTDSEALRKRVFYGGLDHKLQNEVWGLLLGYYPYESTYAEREFLKSVKKLEYENIKNQ 913
Query: 200 YYDIPDSERSDDEVNMLRQ--IAVDCPRTVPDVTFFQQQQVQKS--LERILYAWAIRHPA 255
+ I ++ R+ I D RT + F++ L IL ++ +
Sbjct: 914 WQSISSAQAKRFTKFRERKGLIEKDVVRTDRSLAFYEGDDNPNVNVLRDILLTYSFYNFD 1093
Query: 256 SGYVQGINDLVTPFLVVFISEHLEGGIDDWSMSDLSSDKISNVEADCYWCLSKLLDGMQD 315
GY QG++DL++P L V +DD E++ +WC L++ +
Sbjct: 1094LGYCQGMSDLLSPILFV---------MDD--------------ESEAFWCFVALMERLGP 1204
Query: 316 HYTFAQPGIQRLVFKLKELVRRIDEPISQHIEDQGLEFLQFAFRWFNCLLIREIPFDLIT 375
++ Q G+ +F L +LV +D P+ + + + F FRW RE ++
Sbjct: 1205NFNRDQNGMHSQLFALSKLVELLDSPLHNYFKQRDCLNYFFCFRWILIQFKREFEYEKTM 1384
Query: 376 RLWD 379
RLW+
Sbjct: 1385RLWE 1396
>BE057658
Length = 375
Score = 66.6 bits (161), Expect = 2e-11
Identities = 39/90 (43%), Positives = 41/90 (45%), Gaps = 48/90 (53%)
Frame = +3
Query: 340 EPISQHIEDQGLEFLQFAFRWFNCLLIRE------------------------------- 368
EP+S+HIEDQGLEFLQFAFRWFNCLLIRE
Sbjct: 105 EPVSRHIEDQGLEFLQFAFRWFNCLLIREVCNDILFSYKGGSFLNI*LIT*QNGNIGLR* 284
Query: 369 -----------------IPFDLITRLWDTY 381
IPF LITRLWDTY
Sbjct: 285 IGMIXCFFTNDV*LYN*IPFHLITRLWDTY 374
>TC218247 similar to UP|Q9FFV0 (Q9FFV0) Similarity to GTPase activating
protein, partial (77%)
Length = 1418
Score = 60.1 bits (144), Expect = 2e-09
Identities = 53/183 (28%), Positives = 83/183 (44%), Gaps = 4/183 (2%)
Frame = +2
Query: 216 LRQIAVDCPRTVPDVTFFQQQQVQKSLERILYAWAIRHPASGYVQGINDLVTPFLVVFIS 275
L QI +D RT + F+++Q+ L IL +A GY QG+ DL +P +++
Sbjct: 332 LHQIGLDVVRTDRTLVFYEKQENLSKLWDILAVYAWIDKDVGYGQGMCDLCSPMIIL--- 502
Query: 276 EHLEGGIDDWSMSDLSSDKISNVEADCYWCLSKLLDGMQDHY--TFAQPGIQRLVFKLKE 333
+DD EAD +WC +L+ ++ ++ T + G+ + L
Sbjct: 503 ------LDD--------------EADAFWCFERLMRRLRGNFRCTESSVGVAAQLSNLAS 622
Query: 334 LVRRIDEPISQHIEDQGLEFLQFAFRWFNCLLIREIPFDLITRLWDTYLA-EGDALPD-F 391
+ + ID + +H+E G FAFR L RE F LW+ A E D PD F
Sbjct: 623 VTQVIDPKLHKHLEHLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYD--PDLF 796
Query: 392 LVY 394
L+Y
Sbjct: 797 LMY 805
>TC224893
Length = 705
Score = 59.3 bits (142), Expect = 3e-09
Identities = 36/124 (29%), Positives = 62/124 (49%), Gaps = 5/124 (4%)
Frame = +1
Query: 288 SDLSSDKISNVEADCYWCLSKLLDGMQDHYTF----AQPGIQRLVFKLKELVRRIDEPIS 343
+D + + EAD +C +LL G +D++ + GI+ + +L +L+R DE +
Sbjct: 10 NDPDEENAAFAEADAVFCFVELLSGFRDNFVQQLDNSVVGIRATITRLSQLLREHDEELW 189
Query: 344 QHIEDQGLEFLQF-AFRWFNCLLIREIPFDLITRLWDTYLAEGDALPDFLVYIFASFLLT 402
+H+E QF AFRW LL +E F +WDT L++ D + L+ + + L+
Sbjct: 190 RHLEVTSKVNPQFYAFRWITLLLTQEFNFADSLHIWDTLLSDPDGPQETLLRVCCAMLVL 369
Query: 403 TNSR 406
R
Sbjct: 370 VRKR 381
>TC224866 similar to UP|Q6ZFZ1 (Q6ZFZ1) GTPase activating protein-like,
partial (31%)
Length = 838
Score = 55.8 bits (133), Expect = 4e-08
Identities = 33/138 (23%), Positives = 60/138 (42%)
Frame = +3
Query: 242 LERILYAWAIRHPASGYVQGINDLVTPFLVVFISEHLEGGIDDWSMSDLSSDKISNVEAD 301
L IL ++ + GY QG++DL++P L V +E ++
Sbjct: 57 LRDILLTYSFYNFDLGYCQGMSDLLSPILFVMDNE-----------------------SE 167
Query: 302 CYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPISQHIEDQGLEFLQFAFRWF 361
+WC L++ + ++ Q G+ +F L +LV +D P+ + + + F FRW
Sbjct: 168 AFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDSPLHNYFKQRDCLNYFFCFRWI 347
Query: 362 NCLLIREIPFDLITRLWD 379
RE ++ RLW+
Sbjct: 348 LIQFKREFEYEKTMRLWE 401
>BI968908
Length = 394
Score = 54.3 bits (129), Expect = 1e-07
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Frame = -2
Query: 299 EADCYWCLSKLLDGMQD----HYTFAQPGIQRLVFKLKELVRRIDEPISQHIEDQGLEFL 354
EAD ++C +LL G +D H + GI+ + +L +L+R DE + +H+E
Sbjct: 390 EADAFFCFVELLSGFRDNFVHHLANSVVGIRXTITRLSQLLRDHDEELWRHLEVTSKVNP 211
Query: 355 QF-AFRWFNCLLIREIPFDLITRLWDTYLAE 384
QF AFRW LL +E F WDT L +
Sbjct: 210 QFYAFRWITLLLTQEFNFAATLXXWDTLLTD 118
>BF425319
Length = 412
Score = 53.1 bits (126), Expect = 2e-07
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Frame = +1
Query: 299 EADCYWCLSKLLDGMQDHYTFAQP----GIQRLVFKLKELVRRIDEPISQHIEDQGLEFL 354
EAD ++C +LL QD++ GI+ + +L +L++ DE + +H+E
Sbjct: 7 EADTFFCFVELLSRFQDNFCQQLDNSIVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNP 186
Query: 355 QF-AFRWFNCLLIREIPFDLITRLWDTYLAEGDALPDFLVYIFASFLLTTNSR 406
QF AFRW LL +E F I +WD L++ + + L+ I + L+ R
Sbjct: 187 QFYAFRWIILLLTQEFNFADILHIWDVILSDPEGPQETLLRICCAMLILVRRR 345
>TC218793 weakly similar to UP|Q7KVQ0 (Q7KVQ0) CG4038-PA, partial (12%)
Length = 632
Score = 47.0 bits (110), Expect = 2e-05
Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = +3
Query: 128 ATDSARVTKFNKVLSGTVVILDNLRELAWSGVPDY--MRPKVWRLLLGYEPPNSDRKEGV 185
A D +R + LS VV + LR LA G+PD +R VW+LLLGY PP+
Sbjct: 393 AHDVSRQAQLLAELSKKVVDMSELRSLACQGIPDAAGIRSTVWKLLLGYLPPDRGLWSAE 572
Query: 186 LGRKRGEY 193
L +KR +Y
Sbjct: 573 LAKKRFQY 596
>TC218792 homologue to UP|O44991 (O44991) Lipid depleted protein 6, partial
(4%)
Length = 756
Score = 46.6 bits (109), Expect = 2e-05
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +3
Query: 128 ATDSARVTKFNKVLSGTVVILDNLRELAWSGVPDY--MRPKVWRLLLGYEPPNSDRKEGV 185
A D +R + LS VV + LR LA G+PD +R W+LLLGY PP+
Sbjct: 318 AHDVSRQAQLLAELSKKVVDMSELRSLACQGIPDAAGIRSTAWKLLLGYLPPDRGLWSAE 497
Query: 186 LGRKRGEY 193
L +KR +Y
Sbjct: 498 LAKKRSQY 521
>TC213452 similar to UP|Q6Z973 (Q6Z973) GTPase activator protein-like,
partial (42%)
Length = 733
Score = 40.8 bits (94), Expect = 0.001
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Frame = +2
Query: 301 DCYWCLSKLLDGM--QDHYTFAQPG--IQRLVFKLKELVRRIDEPISQHIEDQGLEFLQF 356
D +W L+ LL+ + D YT G +++ VFK +L+ + I+ H+E +
Sbjct: 5 DAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFK--DLLVKKCPRIATHLEALEFDVSLV 178
Query: 357 AFRWFNCLLIREIPFDLITRLWDTYLAEG 385
WF CL + +P + R+WD EG
Sbjct: 179 TTEWFLCLFSKSLPSETTLRVWDVIFYEG 265
>TC221527 similar to UP|O81347 (O81347) Plant adhesion molecule 1 (PAM1),
partial (41%)
Length = 638
Score = 40.4 bits (93), Expect = 0.002
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = +1
Query: 313 MQDHYTFAQPGIQRLVFKLKELVRRIDEPISQHIEDQGLEFLQFAFRWFNCLLIREIPFD 372
M+ Y P +Q+ +F+ + VR + +H + + +A +WF + PF
Sbjct: 40 MEGLYLAGLPLVQQYLFQFECSVREHLPKLGEHFSYEMINPSMYASQWFITVFSYSFPFH 219
Query: 373 LITRLWDTYLAEG 385
L R+WD +L EG
Sbjct: 220 LALRIWDVFLYEG 258
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.135 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,116,363
Number of Sequences: 63676
Number of extensions: 277273
Number of successful extensions: 1928
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 1642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1781
length of query: 451
length of database: 12,639,632
effective HSP length: 100
effective length of query: 351
effective length of database: 6,272,032
effective search space: 2201483232
effective search space used: 2201483232
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Medicago: description of AC137825.12