BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137823.12 + phase: 0 /pseudo
(59 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC203319 UP|Q84V87 (Q84V87) Chalcone synthase, partial (41%) 110 1e-25
TC214443 UP|CHS1_SOYBN (P24826) Chalcone synthase 1 (Naringenin... 106 2e-24
TC214207 UP|CHS6_SOYBN (P30080) Chalcone synthase 6 (Naringenin... 105 5e-24
TC214195 UP|CHS3_SOYBN (P19168) Chalcone synthase 3 (Naringenin... 104 8e-24
TC203259 UP|CHS7_SOYBN (P30081) Chalcone synthase 7 (Naringenin... 104 8e-24
TC214314 homologue to UP|CHS1_SOYBN (P24826) Chalcone synthase 1... 104 1e-23
BI971617 95 8e-21
TC216931 weakly similar to UP|O22519 (O22519) Chalcone synthase,... 64 2e-11
CA937853 similar to GP|18874081|gb| benzophenone synthase {Hyper... 64 2e-11
TC210490 similar to UP|CHSY_CALCH (P48385) Chalcone synthase (N... 62 8e-11
AW759307 27 2.8
TC232393 similar to UP|Q9SY57 (Q9SY57) F14N23.3, partial (26%) 26 4.8
>TC203319 UP|Q84V87 (Q84V87) Chalcone synthase, partial (41%)
Length = 753
Score = 110 bits (275), Expect = 1e-25
Identities = 52/59 (88%), Positives = 57/59 (96%)
Frame = +1
Query: 1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRM 59
MVSV+EIR+AQRAEGPATILAIGTANP NCV+QSTYPD+YF+ITNSEH TELKEKFQRM
Sbjct: 277 MVSVAEIRQAQRAEGPATILAIGTANPPNCVDQSTYPDYYFRITNSEHMTELKEKFQRM 453
>TC214443 UP|CHS1_SOYBN (P24826) Chalcone synthase 1 (Naringenin-chalcone
synthase 1) , complete
Length = 1606
Score = 106 bits (265), Expect = 2e-24
Identities = 49/59 (83%), Positives = 55/59 (93%)
Frame = +3
Query: 1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRM 59
MVSV EIRKAQRAEGPAT++AIGTA P NCV+QSTYPD+YF+ITNSEH TELKEKF+RM
Sbjct: 75 MVSVEEIRKAQRAEGPATVMAIGTATPPNCVDQSTYPDYYFRITNSEHMTELKEKFKRM 251
>TC214207 UP|CHS6_SOYBN (P30080) Chalcone synthase 6 (Naringenin-chalcone
synthase 6) , complete
Length = 1488
Score = 105 bits (262), Expect = 5e-24
Identities = 48/59 (81%), Positives = 55/59 (92%)
Frame = +3
Query: 1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRM 59
MVSV EIRKAQRAEGPAT++AIGTA P NCV+QSTYPD+YF+ITNS+H TELKEKF+RM
Sbjct: 117 MVSVEEIRKAQRAEGPATVMAIGTATPPNCVDQSTYPDYYFRITNSDHMTELKEKFKRM 293
>TC214195 UP|CHS3_SOYBN (P19168) Chalcone synthase 3 (Naringenin-chalcone
synthase 3) , partial (31%)
Length = 447
Score = 104 bits (260), Expect = 8e-24
Identities = 48/59 (81%), Positives = 54/59 (91%)
Frame = +2
Query: 1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRM 59
MVSV EIR AQRAEGPAT++AIGTA P NCV+QSTYPD+YF+ITNSEH TELKEKF+RM
Sbjct: 86 MVSVEEIRNAQRAEGPATVMAIGTATPPNCVDQSTYPDYYFRITNSEHMTELKEKFKRM 262
>TC203259 UP|CHS7_SOYBN (P30081) Chalcone synthase 7 (Naringenin-chalcone
synthase 7) , complete
Length = 1356
Score = 104 bits (260), Expect = 8e-24
Identities = 50/59 (84%), Positives = 56/59 (94%)
Frame = +3
Query: 1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRM 59
MVSV+EIR+AQRAEGPATILAIGTANP N V+QSTYPD+YF+ITNS+H TELKEKFQRM
Sbjct: 96 MVSVAEIRQAQRAEGPATILAIGTANPPNRVDQSTYPDYYFRITNSDHMTELKEKFQRM 272
>TC214314 homologue to UP|CHS1_SOYBN (P24826) Chalcone synthase 1
(Naringenin-chalcone synthase 1) , partial (29%)
Length = 713
Score = 104 bits (259), Expect = 1e-23
Identities = 48/59 (81%), Positives = 54/59 (91%)
Frame = +2
Query: 1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRM 59
MVSV IRKAQRAEGPAT++AIGTA P NCV+QSTYPD+YF+ITNSEH TELKEKF+RM
Sbjct: 359 MVSVEAIRKAQRAEGPATVMAIGTATPPNCVDQSTYPDYYFRITNSEHMTELKEKFKRM 535
>BI971617
Length = 318
Score = 94.7 bits (234), Expect = 8e-21
Identities = 44/59 (74%), Positives = 52/59 (87%)
Frame = +2
Query: 1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRM 59
MVSV EIR+AQRAEGPAT++AIGTA P NCV+QSTYPD+YF+ITNSEH T+L F+RM
Sbjct: 35 MVSVEEIRQAQRAEGPATVMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLFFIFKRM 211
>TC216931 weakly similar to UP|O22519 (O22519) Chalcone synthase, partial
(68%)
Length = 1405
Score = 63.5 bits (153), Expect = 2e-11
Identities = 27/43 (62%), Positives = 35/43 (80%)
Frame = +2
Query: 17 ATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRM 59
AT+LAIGTANP N + Q YPDFYF++TNS+H LK+KF+R+
Sbjct: 89 ATVLAIGTANPPNFILQEDYPDFYFRVTNSDHLHRLKQKFKRI 217
>CA937853 similar to GP|18874081|gb| benzophenone synthase {Hypericum
androsaemum}, partial (12%)
Length = 370
Score = 63.5 bits (153), Expect = 2e-11
Identities = 27/43 (62%), Positives = 35/43 (80%)
Frame = +2
Query: 17 ATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRM 59
AT+LAIGTANP N + Q YPDFYF++TNS+H LK+KF+R+
Sbjct: 92 ATVLAIGTANPPNFILQEDYPDFYFRVTNSDHLHRLKQKFKRI 220
>TC210490 similar to UP|CHSY_CALCH (P48385) Chalcone synthase
(Naringenin-chalcone synthase) , partial (70%)
Length = 837
Score = 61.6 bits (148), Expect = 8e-11
Identities = 25/35 (71%), Positives = 31/35 (88%)
Frame = +1
Query: 25 ANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRM 59
A P+NCV Q+ YPD+YF+ITNSEH T+LKEKF+RM
Sbjct: 1 ATPSNCVSQADYPDYYFRITNSEHMTDLKEKFKRM 105
>AW759307
Length = 387
Score = 26.6 bits (57), Expect = 2.8
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 30 CVEQSTYPDFYFKI 43
CV++STYPD Y K+
Sbjct: 155 CVDKSTYPDSYIKL 114
>TC232393 similar to UP|Q9SY57 (Q9SY57) F14N23.3, partial (26%)
Length = 975
Score = 25.8 bits (55), Expect = 4.8
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = +2
Query: 34 STYPDFYFKITNSEHKTELKE 54
+TY DF+ +TN +H+T +++
Sbjct: 68 NTYDDFFAGLTNPKHETNVRD 130
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.314 0.127 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,991,139
Number of Sequences: 63676
Number of extensions: 14839
Number of successful extensions: 85
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of query: 59
length of database: 12,639,632
effective HSP length: 35
effective length of query: 24
effective length of database: 10,410,972
effective search space: 249863328
effective search space used: 249863328
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)
Medicago: description of AC137823.12