Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137821.7 - phase: 0 
         (821 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BM885415 similar to SP|Q8RVQ5|SC10 Exocyst complex component Sec...   252  4e-67
BI471314 similar to SP|Q8RVQ5|SC10 Exocyst complex component Sec...   234  2e-61
CO984067                                                              194  6e-60
TC210096 similar to UP|SC10_ARATH (Q8RVQ5) Exocyst complex compo...   160  2e-39
TC220124 weakly similar to UP|Q9LZU5 (Q9LZU5) Kinesin-related pr...    39  0.007
TC228462 similar to GB|AAQ56779.1|34098793|BT010336 At4g01400 {A...    31  1.9
CO985160                                                               30  5.6
TC225777 weakly similar to UP|Q868B4 (Q868B4) C. elegans GRL-25 ...    29  7.4
TC210875 similar to UP|Q79FV6 (Q79FV6) PE-PGRS FAMILY PROTEIN, p...    29  9.6
TC230142                                                               29  9.6
TC213198 similar to UP|Q9SY57 (Q9SY57) F14N23.3, partial (18%)         29  9.6

>BM885415 similar to SP|Q8RVQ5|SC10 Exocyst complex component Sec10.
           [Mouse-ear cress] {Arabidopsis thaliana}, partial (16%)
          Length = 407

 Score =  252 bits (644), Expect = 4e-67
 Identities = 129/135 (95%), Positives = 134/135 (98%)
 Frame = +1

Query: 586 ESSFRSFMVAVQRSGSSVAIIQQYFSNSISRLLLPVDGAHAAACEEMATAMSSAEAAAYK 645
           ESSFRSFM+AVQRSGSSVAIIQQYF+NSISRLLLPVDGAHAAACEEMATAMSSAEAAAYK
Sbjct: 1   ESSFRSFMIAVQRSGSSVAIIQQYFANSISRLLLPVDGAHAAACEEMATAMSSAEAAAYK 180

Query: 646 GLQQCIETVMAEVERLLSAEQKATDYKSPDDGMAPDHRPTNACTRVVAYLSRVLESAFTA 705
           GLQQCIETVMAEVERLLSAEQKATDY+SPDDGMAPDHR T+ACTRVVAYLSRVLESAFTA
Sbjct: 181 GLQQCIETVMAEVERLLSAEQKATDYRSPDDGMAPDHRATSACTRVVAYLSRVLESAFTA 360

Query: 706 LEGLNKQAFLSELGN 720
           LEGLNKQAFL+ELGN
Sbjct: 361 LEGLNKQAFLTELGN 405


>BI471314 similar to SP|Q8RVQ5|SC10 Exocyst complex component Sec10.
           [Mouse-ear cress] {Arabidopsis thaliana}, partial (16%)
          Length = 422

 Score =  234 bits (596), Expect = 2e-61
 Identities = 125/138 (90%), Positives = 134/138 (96%), Gaps = 1/138 (0%)
 Frame = +2

Query: 462 ELRAESQ-ISDSSGTIGRSKGATVASSQQQISVTVVTEFVRWNEEAITRCNLFSSQPSTL 520
           ELRAESQ ISD+SG+IGRSKGA+V SSQQQISVTVVTEFVRWNEEAI+RCNLF+SQP+TL
Sbjct: 8   ELRAESQQISDASGSIGRSKGASVVSSQQQISVTVVTEFVRWNEEAISRCNLFASQPATL 187

Query: 521 ATLVKAVFTCLLDQVSQYIAEGLERARDGLTEAANLRERFVLGTSVSRRVAAAAASAAEA 580
           AT VKAVFTCLLDQVSQYIA+GLERARD LTEAANLRERFVLGTSV+RRVAAAAASAAEA
Sbjct: 188 ATHVKAVFTCLLDQVSQYIADGLERARDSLTEAANLRERFVLGTSVTRRVAAAAASAAEA 367

Query: 581 AAAAGESSFRSFMVAVQR 598
           AAAAGESSFRSFM+AVQR
Sbjct: 368 AAAAGESSFRSFMIAVQR 421


>CO984067 
          Length = 827

 Score =  194 bits (494), Expect(2) = 6e-60
 Identities = 101/115 (87%), Positives = 108/115 (93%)
 Frame = -1

Query: 285 QFNRGTSAMQHYVATRPMFIDVEVMNADTRLVLGDQAAQSSPNNVARGLSSLYKEITDTV 344
           QFNRGTSAMQHYVATRPMFIDVE+MNADT+LVLGD A Q+SP+NVARGLSSLYKEITDTV
Sbjct: 749 QFNRGTSAMQHYVATRPMFIDVEIMNADTKLVLGDLAGQASPSNVARGLSSLYKEITDTV 570

Query: 345 RKEAATITAVFPSPNEVMSILVQRVLEQRVTALLDKLLVKPSLVNLPSMEEGGLL 399
            KEAATITAVFPSP+EVMSILVQRVLEQ +TALLDKLL K SLVNLPS+EEG LL
Sbjct: 569 HKEAATITAVFPSPSEVMSILVQRVLEQ*ITALLDKLLEKSSLVNLPSVEEGELL 405



 Score = 55.8 bits (133), Expect(2) = 6e-60
 Identities = 25/32 (78%), Positives = 30/32 (93%)
 Frame = -2

Query: 401 YLRMLAVSYEKTQEIARDLRTVGCGDLDVEGL 432
           YLRMLAV+YEKT E+ARDL+ VGCGDLDV+G+
Sbjct: 301 YLRMLAVAYEKT*ELARDLQAVGCGDLDVDGV 206


>TC210096 similar to UP|SC10_ARATH (Q8RVQ5) Exocyst complex component Sec10,
           partial (10%)
          Length = 684

 Score =  160 bits (405), Expect = 2e-39
 Identities = 80/84 (95%), Positives = 84/84 (99%)
 Frame = +3

Query: 738 SGGLRLKRDITEYGEFVRSFNAPSVDEKFELLGILANVFIVAPESLSTLFEGTPSIRKDA 797
           SGGLRLKRDITEYGEF+RSFNAPSVDEKFELLGI+ANVFIVAPESLSTLFEGTPSIRKDA
Sbjct: 12  SGGLRLKRDITEYGEFLRSFNAPSVDEKFELLGIMANVFIVAPESLSTLFEGTPSIRKDA 191

Query: 798 QRFIQLREDYKSAKLASKLSSLWS 821
           QRFIQLR+DYK+AKLASKLSSLWS
Sbjct: 192 QRFIQLRDDYKAAKLASKLSSLWS 263


>TC220124 weakly similar to UP|Q9LZU5 (Q9LZU5) Kinesin-related protein-like,
           partial (26%)
          Length = 864

 Score = 39.3 bits (90), Expect = 0.007
 Identities = 48/233 (20%), Positives = 103/233 (43%), Gaps = 13/233 (5%)
 Frame = +3

Query: 75  ATSPLFPEVEKLLSLFKDSCKELLELRKQIDGRLHNLKKDVSVQDSKHRRTLAELEKGV- 133
           AT  L   V KL +++    K L +L +++         D+  + +KH   L +L KG+ 
Sbjct: 27  ATEDLRQRVGKLKNMYGSGIKALDDLAEELKVNNQLTYDDLKSEVAKHSSALEDLFKGIA 206

Query: 134 -------DGLFASFARLDSRISSVGQTAAKIGDHLQSADAQRETASQTIELIKYLMEFNS 186
                  + L +S  + ++ +++      +   H ++ +  R  +  T+   + +    S
Sbjct: 207 LEADSLLNDLQSSLHKQEANLTAYAHQQRE--SHARAVETTRAVSKITVNFFETIDRHAS 380

Query: 187 SPGDLMELSPLFSDDSRVAEAASIAQKLRSFAEEDIGRHGITAPSAVGNATASRGLEVAV 246
           S  +++E + L  +D ++ E     ++  ++ E+ +    +    A  NA   + +++AV
Sbjct: 381 SLTEIVEEAQLV-NDQKLCELEKKFEECTAYEEKQL-LEKVAEMLASSNARKKQLVQMAV 554

Query: 247 ANLQEYCN----ELENRLLSRFDAASQ-KRELTTMAECAKILSQFNRGTSAMQ 294
            +L+E  N    +L    L+  D+ S  K E     E  K  S ++  TSA++
Sbjct: 555 NDLRESANCRTSKLRQEALTMQDSTSSVKAEWRVHME--KTESNYHEDTSAVE 707


>TC228462 similar to GB|AAQ56779.1|34098793|BT010336 At4g01400 {Arabidopsis
           thaliana;} , partial (45%)
          Length = 1232

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 46/209 (22%), Positives = 81/209 (38%), Gaps = 14/209 (6%)
 Frame = +2

Query: 620 PVDGAHAAAC-EEMATAMSSAEAAAYKGLQQCIETVMAEVERLL------SAEQKATDYK 672
           P D     +C  E+A + ++ + A   G++Q + T+   +  LL      S E    +Y 
Sbjct: 392 PADREKVKSCLTELADSSNAFKQALNAGIEQLVATITPRIRPLLDSVGTISYELSEAEYA 571

Query: 673 SPDDGMAPDHRPTNACTRVVAYLSRVLESAFTALEGLNKQAFLSELGNRLHKVLLNHWQK 732
             +       R   A    VA+L  ++ +        N   F+  + + + K L     +
Sbjct: 572 DNEVNDPWVQRLLYAVESNVAWLQPLMTAN-------NYDTFVHLIIDFIVKRLEVIMMQ 730

Query: 733 YTFNPSGGLRLKRDITEYGEFVRSFNAPSVDEKFELLGILANVFIVAPESLSTLFEGTPS 792
             F+  GGL+L RD              +V +KF  L  +A +  +   S    F G  S
Sbjct: 731 KRFSQLGGLQLDRDARALVSHFSVMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENS 910

Query: 793 -------IRKDAQRFIQLREDYKSAKLAS 814
                     + +R + LR D+KS  +A+
Sbjct: 911 GPMTWRLTPAEVRRVLGLRVDFKSEAIAA 997


>CO985160 
          Length = 777

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 33/114 (28%), Positives = 48/114 (41%), Gaps = 3/114 (2%)
 Frame = +2

Query: 566 VSRRVAAAAASAAEAAAAAGESSFRSFMVAVQRSGSSVAIIQQYFSNSISRLLLPVDGAH 625
           V   VAAA A  AEAAA A   +  +  VA   +   V          +         A 
Sbjct: 392 VEVEVAAAVAGFAEAAAVAAAQAAAAGPVAAAVAAEEVVAAAAAAEEVV---------AA 544

Query: 626 AAACEEMATAMSSAE--AAAYKGLQQCIETVM-AEVERLLSAEQKATDYKSPDD 676
           AAA EE+  A+  AE  AAA    ++ +  V+ AE   +++ E  A    + +D
Sbjct: 545 AAAAEEVVAAVVGAEEVAAAAAAAEEVVAAVVGAEEVAVVACEVAAAVVATAED 706


>TC225777 weakly similar to UP|Q868B4 (Q868B4) C. elegans GRL-25 protein
           (Corresponding sequence ZK643.8), partial (7%)
          Length = 762

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 26/81 (32%), Positives = 39/81 (48%)
 Frame = +2

Query: 563 GTSVSRRVAAAAASAAEAAAAAGESSFRSFMVAVQRSGSSVAIIQQYFSNSISRLLLPVD 622
           G + +   +AAAA+A  AAAAA   +  +   +   + ++   I    S SIS   +P  
Sbjct: 140 GAATTTATSAAAAAATTAAAAAATPAATTATPSTTTTAATATDISANIS-SISSAAVPPS 316

Query: 623 GAHAAACEEMATAMSSAEAAA 643
            A AA     ATA ++A A A
Sbjct: 317 PAFAAV---PATAAAAATATA 370


>TC210875 similar to UP|Q79FV6 (Q79FV6) PE-PGRS FAMILY PROTEIN, partial (3%)
          Length = 649

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +1

Query: 563 GTSVSRRVAAAAASAAEAAAAAGESSFRSFMVAVQRSGSSVAIIQQYFSNSI 614
           G+    R+A + A    AAAAA  +S R    + +RS  S++  +++FS  +
Sbjct: 58  GSETRTRIAGSQARGPPAAAAAANASGRRSWQSFRRSRISISG*RRFFSQKV 213


>TC230142 
          Length = 901

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 16/48 (33%), Positives = 26/48 (53%)
 Frame = +1

Query: 360 EVMSILVQRVLEQRVTALLDKLLVKPSLVNLPSMEEGGLLFYLRMLAV 407
           E   +L Q +L ++VT   + L VKP  + +PS  +GG+   L  + V
Sbjct: 271 ECHKVLQQNMLRKKVTRQQNWLPVKPGAL*VPSSLQGGIFLKLFTMVV 414


>TC213198 similar to UP|Q9SY57 (Q9SY57) F14N23.3, partial (18%)
          Length = 596

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +1

Query: 757 FNAPSVDEKFELLGILANVFIVAPESLSTLFEGTPSIRKDAQRFIQLREDY--KSAKLAS 814
           ++APSV  K + L  L + F+   ESLS   +    + +D + F++   D    S K  S
Sbjct: 241 YHAPSVARKRKRLSKLLSAFVSVAESLSESADTIGIVSRDVKVFLESDSDQIPNSLKQIS 420

Query: 815 KLS 817
           K++
Sbjct: 421 KIA 429


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.315    0.129    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,313,766
Number of Sequences: 63676
Number of extensions: 285624
Number of successful extensions: 1610
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1568
length of query: 821
length of database: 12,639,632
effective HSP length: 105
effective length of query: 716
effective length of database: 5,953,652
effective search space: 4262814832
effective search space used: 4262814832
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)


Medicago: description of AC137821.7