TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137669.5 + phase: 0 
         (58 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC228862 weakly similar to UP|Q94BX2 (Q94BX2) AT3g50910/F18B3_19...    86  4e-18
TC229537 homologue to UP|Q8LD11 (Q8LD11) 26S proteasome non-ATPa...    30  0.33
TC216058 similar to UP|MCAT_ARATH (Q93XM7) Mitochondrial carniti...    26  3.7
TC228618 similar to UP|Q9SKW6 (Q9SKW6) F5J5.4, partial (29%)           25  6.3
TC211870                                                               25  6.3
TC210061 similar to UP|Q6NQN0 (Q6NQN0) At1g53760, partial (53%)        25  8.2
TC231326                                                               25  8.2
TC228619 similar to GB|AAO24579.1|27808598|BT003147 At1g36050 {A...    25  8.2

>TC228862 weakly similar to UP|Q94BX2 (Q94BX2) AT3g50910/F18B3_190, partial
           (35%)
          Length = 1187

 Score = 85.9 bits (211), Expect = 4e-18
 Identities = 39/57 (68%), Positives = 47/57 (82%)
 Frame = +2

Query: 1   MARRERQRKSKKQKWIWGSLTTVIALGTAAVAWSYLPAGGESYSAEDHPVPKHDDAA 57
           MARRERQR+S++Q+WIWGS+TT IA+GTAA+AWSYLP G  S SA    V +HDDAA
Sbjct: 530 MARRERQRRSRRQRWIWGSITTAIAVGTAAIAWSYLPVGRGSTSAVHDQVSEHDDAA 700


>TC229537 homologue to UP|Q8LD11 (Q8LD11) 26S proteasome non-ATPase
           regulatory subunit, partial (45%)
          Length = 515

 Score = 29.6 bits (65), Expect = 0.33
 Identities = 8/28 (28%), Positives = 18/28 (63%)
 Frame = +1

Query: 9   KSKKQKWIWGSLTTVIALGTAAVAWSYL 36
           K + ++W+WG +T ++ LG   + W+ +
Sbjct: 376 KLEGRRWLWGGITRILDLGVGFLEWTLI 459


>TC216058 similar to UP|MCAT_ARATH (Q93XM7) Mitochondrial
           carnitine/acylcarnitine carrier-like protein (A BOUT DE
           SOUFFLE) (Carnitine/acylcarnitine translocase-like
           protein) (CAC-like protein), partial (97%)
          Length = 1441

 Score = 26.2 bits (56), Expect = 3.7
 Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 4   RERQRKSKKQKWIW-GSLTTVIALGTAAVAWSY 35
           RER+R+S K+ W W G+    + +    + W++
Sbjct: 112 RERERESHKKVWDWNGTKRNKVCVAQTWICWNH 14


>TC228618 similar to UP|Q9SKW6 (Q9SKW6) F5J5.4, partial (29%)
          Length = 730

 Score = 25.4 bits (54), Expect = 6.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 15  WIWGSLTTVIALGTAAVAWSYLPAG 39
           WI   LT+V  +GT  + + Y+P G
Sbjct: 133 WIVCPLTSVYTVGTTLIKYWYIPLG 59


>TC211870 
          Length = 717

 Score = 25.4 bits (54), Expect = 6.3
 Identities = 9/21 (42%), Positives = 15/21 (70%)
 Frame = -1

Query: 2   ARRERQRKSKKQKWIWGSLTT 22
           A+RER+++ K  +WI  + TT
Sbjct: 171 AKREREKRKKNVEWIGAAATT 109


>TC210061 similar to UP|Q6NQN0 (Q6NQN0) At1g53760, partial (53%)
          Length = 827

 Score = 25.0 bits (53), Expect = 8.2
 Identities = 7/28 (25%), Positives = 16/28 (57%)
 Frame = -3

Query: 4  RERQRKSKKQKWIWGSLTTVIALGTAAV 31
          R+  ++ +  +W W S ++ + LGT  +
Sbjct: 93 RKHGKRRESDRWFWRSTSSCLVLGTQTI 10


>TC231326 
          Length = 510

 Score = 25.0 bits (53), Expect = 8.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 4  RERQRKSKKQKWIWGSLTTVIALGTAAVAW 33
          RER ++S + K +W S+  +     +A AW
Sbjct: 47 RERGKESIEVKMVWNSMVVLRVARASAEAW 136


>TC228619 similar to GB|AAO24579.1|27808598|BT003147 At1g36050 {Arabidopsis
           thaliana;} , partial (70%)
          Length = 1191

 Score = 25.0 bits (53), Expect = 8.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 15  WIWGSLTTVIALGTAAVAWSYLPAG 39
           WI   LT+V  +GT  + + Y+P G
Sbjct: 559 WIVCPLTSVYTVGTTLIKY*YIPLG 485


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.313    0.126    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,775,026
Number of Sequences: 63676
Number of extensions: 26603
Number of successful extensions: 182
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of query: 58
length of database: 12,639,632
effective HSP length: 34
effective length of query: 24
effective length of database: 10,474,648
effective search space: 251391552
effective search space used: 251391552
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)