TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137667.10 + phase: 0 /pseudo
         (43 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC206802 similar to PIR|T47805|T47805 U6 snRNA-associated Sm-lik...    89  5e-19
TC214080 homologue to UP|RUXF_ARATH (Q9SUM2) Probable small nucl...    39  6e-04
TC214123 homologue to UP|RUXF_ARATH (Q9SUM2) Probable small nucl...    39  6e-04
TC214306 homologue to UP|RUXG_ARATH (O82221) Probable small nucl...    29  0.47
TC214117 homologue to UP|RUXG_ARATH (O82221) Probable small nucl...    29  0.47
TC214120 homologue to UP|RUXG_ARATH (O82221) Probable small nucl...    29  0.47
BQ629802                                                               29  0.47
BM177830 PIR|S22826|S228 small nuclear ribonucleoprotein E homol...    25  6.8

>TC206802 similar to PIR|T47805|T47805 U6 snRNA-associated Sm-like protein -
           Arabidopsis thaliana {Arabidopsis thaliana;} , complete
          Length = 705

 Score = 89.0 bits (219), Expect = 5e-19
 Identities = 43/43 (100%), Positives = 43/43 (100%)
 Frame = +3

Query: 1   MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEG 43
           MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEG
Sbjct: 330 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEG 458


>TC214080 homologue to UP|RUXF_ARATH (Q9SUM2) Probable small nuclear
           ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F)
           (SmF), partial (97%)
          Length = 666

 Score = 38.9 bits (89), Expect = 6e-04
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +2

Query: 1   MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 33
           MN+ +  TEEY+ GQ     G+  IR NNVLY+
Sbjct: 284 MNLQLANTEEYIEGQFTGNLGEILIRCNNVLYL 382


>TC214123 homologue to UP|RUXF_ARATH (Q9SUM2) Probable small nuclear
           ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F)
           (SmF), partial (95%)
          Length = 649

 Score = 38.9 bits (89), Expect = 6e-04
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +3

Query: 1   MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 33
           MN+ +  TEEY+ GQ     G+  IR NNVLY+
Sbjct: 258 MNLQLANTEEYIEGQFTGNLGEILIRCNNVLYL 356


>TC214306 homologue to UP|RUXG_ARATH (O82221) Probable small nuclear
           ribonucleoprotein G (snRNP-G) (Sm protein G) (Sm-G)
           (SmG), partial (98%)
          Length = 797

 Score = 29.3 bits (64), Expect = 0.47
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +3

Query: 1   MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 33
           MN+ ++ T E VNG  KN  G   IRGN+V+ +
Sbjct: 393 MNLVVDNTVE-VNGNEKNDIGMVVIRGNSVVTV 488


>TC214117 homologue to UP|RUXG_ARATH (O82221) Probable small nuclear
           ribonucleoprotein G (snRNP-G) (Sm protein G) (Sm-G)
           (SmG), partial (98%)
          Length = 534

 Score = 29.3 bits (64), Expect = 0.47
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +1

Query: 1   MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 33
           MN+ ++ T E VNG  KN  G   IRGN+V+ +
Sbjct: 199 MNLVVDNTVE-VNGNEKNDIGMVVIRGNSVVTV 294


>TC214120 homologue to UP|RUXG_ARATH (O82221) Probable small nuclear
           ribonucleoprotein G (snRNP-G) (Sm protein G) (Sm-G)
           (SmG), partial (98%)
          Length = 583

 Score = 29.3 bits (64), Expect = 0.47
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +2

Query: 1   MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 33
           MN+ ++ T E VNG  KN  G   IRGN+V+ +
Sbjct: 203 MNLVVDNTVE-VNGNEKNDIGMVVIRGNSVVTV 298


>BQ629802 
          Length = 439

 Score = 29.3 bits (64), Expect = 0.47
 Identities = 11/28 (39%), Positives = 16/28 (56%)
 Frame = +1

Query: 1   MNIAMEQTEEYVNGQLKNKYGDAFIRGN 28
           MN+ +  TEEY+ GQ     G+  IR +
Sbjct: 139 MNLQLANTEEYIEGQFTGNLGEILIRND 222


>BM177830 PIR|S22826|S228 small nuclear ribonucleoprotein E homolog -
           alfalfa, partial (43%)
          Length = 420

 Score = 25.4 bits (54), Expect = 6.8
 Identities = 13/31 (41%), Positives = 19/31 (60%)
 Frame = +3

Query: 3   IAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 33
           + ++ T E VNG  KN  G   IRGN+V+ +
Sbjct: 171 VVVDNTVE-VNGNEKNDIGMVVIRGNSVVTV 260


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.312    0.130    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,105,447
Number of Sequences: 63676
Number of extensions: 5639
Number of successful extensions: 32
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of query: 43
length of database: 12,639,632
effective HSP length: 19
effective length of query: 24
effective length of database: 11,429,788
effective search space: 274314912
effective search space used: 274314912
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)