BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137666.4 + phase: 0
(1451 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NP595172 polyprotein [Glycine max] 715 0.0
TC234828 223 4e-58
BQ272766 weakly similar to GP|28558781|gb| pol protein {Cucumis ... 192 7e-49
BU549069 191 3e-48
NP395548 reverse transcriptase [Glycine max] 169 8e-42
CF922488 155 9e-38
NP395547 reverse transcriptase [Glycine max] 152 1e-36
TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%) 142 1e-33
CO982196 125 2e-28
BI425021 118 2e-26
NP334778 reverse transcriptase [Glycine max] 109 8e-24
BE802896 105 1e-22
AW570005 100 4e-21
BI317507 98 3e-20
BQ273711 95 3e-19
TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 92 2e-18
BI317638 weakly similar to GP|9294238|dbj| contains similarity t... 84 7e-17
BQ299538 56 1e-16
BM084967 85 2e-16
TC211627 84 3e-16
>NP595172 polyprotein [Glycine max]
Length = 4659
Score = 715 bits (1845), Expect = 0.0
Identities = 471/1448 (32%), Positives = 735/1448 (50%), Gaps = 48/1448 (3%)
Frame = +1
Query: 48 RYDPDGAQTWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVGLLPVLEQDGAVVTW 107
R+D W+ + E+ F + ++ + L ++ W+ +L++ +W
Sbjct: 310 RFDGKNVMDWIFKAEQFFDYYATPDADRLIIASVHLDQDVVPWY----QMLQKTEPFSSW 477
Query: 108 TVFRREFLNRYFPEDVRGKKEIEFLELKQGDMSVTEYAAKFTELAKFYPHYTAETAEFSK 167
F R + P + F +L Q +V EY +FT L +AE
Sbjct: 478 QAFTRALELDFGPSAYDCPRATLF-KLNQS-ATVNEYYMQFTALVNRVDGLSAEA--ILD 645
Query: 168 CIKFENGLRADIKRSIGYQKIRIFSELVSSCRIYEEDTKAHYKVMSEKRNKGQSSRPKPY 227
C F +GL+ +I R + + R ++ V+ +++EE K S + K S+ + +
Sbjct: 646 C--FVSGLQEEISRDVKAMEPRTLTKAVALAKLFEE------KYTSPPKTKTFSNLARNF 801
Query: 228 SAPANKGKQRLNDERPQKGKNAPVDVVCYKCGVKGHKSNACTQDEKK------------- 274
++ N + QK N ++ N Q+ KK
Sbjct: 802 TS--NTSATQKYPPTNQKNDNPKPNLPPLLPTPSTKPFNLRNQNIKKISPAEIQLRREKN 975
Query: 275 -CFRCGQKGHVLAECKRGDIVCFSCGEEGHNGAQ----CTQPKKVRTGGKVFALTGNQTT 329
C+ C +K +C ++ E + T+ + +L + +
Sbjct: 976 LCYFCDEKFSPAHKCPNRQVMLLQLEETDEDQTDEQVMVTEEANMDDDTHHLSLNAMRGS 1155
Query: 330 NEDRHIRGTCFFNSTPLIAIIDTGATHCFIVLECAYKLGLIVSDMKGEMVVETPAKGSVT 389
N IR T + ++D G++ FI A L L V V+ G +
Sbjct: 1156 NGVGTIRFTGQVGGIAVKILVDGGSSDNFIQPRVAQVLKLPVEPAPNLRVLV--GNGQIL 1329
Query: 390 TSL-VCLRCPLSMFGRDFEVDLVCLPLLGMDVIFGMNWL--------EYNRVCINCFNK- 439
++ + + PL + G++ +V + L + G DVI G WL +Y + + F
Sbjct: 1330 SAEGIVQQLPLHIQGQEVKVPVYLLQISGADVILGSTWLATLGPHVADYAALTLKFFQND 1509
Query: 440 ---TVHFSSAEEESGAQFLTTKQLKQLERDGILMFSLMASLSLENQVVIDRLP------- 489
T+ E + AQ ++L+ + + A ++ +V D L
Sbjct: 1510 KFITLQGEGNSEATQAQLHHFRRLQNTKS----IEECFAIQLIQKEVPEDTLKDLPTNID 1677
Query: 490 -----VVNEFHEVFPDEIP-DVPPEREVEFSIDLVPGAKLVSMAPYHMSASELAELKKQL 543
+++ + +VF +P +PP+RE + +I L G+ V + PY ++ +++K +
Sbjct: 1678 PELAILLHTYAQVF--AVPASLPPQREQDHAIPLKQGSGPVKVRPYRYPHTQKDQIEKMI 1851
Query: 544 EDLLDKKFVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQL 603
+++L + ++PS SP+ P+LLVKKKDGS R C DYR LN +T+K+ +P+P +D+L+D+L
Sbjct: 1852 QEMLVQGIIQPSNSPFSLPILLVKKKDGSWRFCTDYRALNAITVKDSFPMPTVDELLDEL 2031
Query: 604 VGAKVFSKIDLRSGYHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRI 663
GA+ FSK+DLRSGYHQI V+ ED +KTAFRT +GHYE+ VMPFG+TNAP F MN+I
Sbjct: 2032 HGAQYFSKLDLRSGYHQILVQPEDREKTAFRTHHGHYEWLVMPFGLTNAPATFQCLMNKI 2211
Query: 664 FHAFLDKFVVVFIDDILIYSKIEEEHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFLG 723
F L KFV+VF DDILIYS ++H KHL+ VLQ LK+ +L+A+LSKC F +EV +LG
Sbjct: 2212 FQFALRKFVLVFFDDILIYSASWKDHLKHLESVLQTLKQHQLFARLSKCSFGDTEVDYLG 2391
Query: 724 HVTSGNGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTYK 783
H SG G++++ +KV AV W TP +V ++R FLGL GYYRRFI+ ++ +A PLT L K
Sbjct: 2392 HKVSGLGVSMENTKVQAVLDWPTPNNVKQLRGFLGLTGYYRRFIKSYANIAGPLTDLLQK 2571
Query: 784 GKSFVWDAQCESSFNELKQRLTTAPILILPKPEEPFVVYCDASKFGLGGVLMQDGKVVAY 843
SF+W+ + E++F +LK+ +T AP+L LP +PF++ DAS G+G VL Q+G +AY
Sbjct: 2572 -DSFLWNNEAEAAFVKLKKAMTEAPVLSLPDFSQPFILETDASGIGVGAVLGQNGHPIAY 2748
Query: 844 ASRQLRVHEKNSPTHDLELAAVVFVLKIWRHYLYGSRFEVFSDHKSLKYLFDQKELNMRQ 903
S++L + + EL A+ L +RHYL G++F + +D +SLK L DQ Q
Sbjct: 2749 FSKKLAPRMQKQSAYTRELLAITEALSKFRHYLLGNKFIIRTDQRSLKSLMDQSLQTPEQ 2928
Query: 904 RRWLELLKDYDFCLNYHPDKAKVVADALSRKTLHMSALMVKEFELLEQFRDLSLVCELSS 963
+ WL YDF + Y P K ADALSR +
Sbjct: 2929 QAWLHKFLGYDFKIEYKPGKDNQAADALSRMFM--------------------------- 3027
Query: 964 QSVQLGMLKINSDFLGSIREAQQVDVKFVDLMVVSNQAEESDFKVDEQGVLRFRGRICIP 1023
L + +S FL +R D LM Q ++ +G+L ++ R+ IP
Sbjct: 3028 ----LAWSEPHSIFLEELRARLISDPHLKQLMETYKQGADASHYTVREGLLYWKDRVVIP 3195
Query: 1024 DNEELKKLILEEGHKSNLSIHLGATKMYQDLKKLFWWSGLKKDVARFVYACLTCQKSKVE 1083
EE+ IL+E H S + H G T+ LK F+W +++DV ++ CL CQ++K
Sbjct: 3196 AEEEIVNKILQEYHSSPIGGHAGITRTLARLKAQFYWPKMQEDVKAYIQKCLICQQAKSN 3375
Query: 1084 HQRPAGLLTPLDVPEWKWDSISMDFVSSLPNTSRGHDSIWVVVDRLTKSAHFIPINISYP 1143
+ PAGLL PL +P+ W+ ++MDF++ LPN S G I VV+DRLTK AHFIP+ Y
Sbjct: 3376 NTLPAGLLQPLPIPQQVWEDVAMDFITGLPN-SFGLSVIMVVIDRLTKYAHFIPLKADYN 3552
Query: 1144 VAQLAEIYIQNIVKLHGVPSSIVSDRDPRFTSRFWRSLQDALGSKLKLSSAYHPQTDGQS 1203
+AE ++ +IVKLHG+P SIVSDRD FTS FW+ L G+ L +SSAYHPQ+DGQS
Sbjct: 3553 SKVVAEAFMSHIVKLHGIPRSIVSDRDRVFTSTFWQHLFKLQGTTLAMSSAYHPQSDGQS 3732
Query: 1204 ERTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPFEALYGRKCKTPLCW 1263
E + LE LR E W LP EF YN +YH S+GM PF ALYGR+ T
Sbjct: 3733 EVLNKCLEMYLRCFTYEHPKGWVKALPWAEFWYNTAYHMSLGMTPFRALYGREPPTLTRQ 3912
Query: 1264 FESGESVVLGPELVHETTEKVKMIREKMKASQSRQKSYHDKRRKDLEFQEGGHVFLRVTP 1323
S + E + + + ++ + +Q K DK+R D+ FQ G V +++ P
Sbjct: 3913 ACSIDDPAEVREQLTDRDALLAKLKINLTRAQQVMKRQADKKRLDVSFQIGDEVLVKLQP 4092
Query: 1324 MTGVGRAL-KSRKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKY---V 1379
L K++KL+ ++ GP+++ ++G VAY++ L P + +H VFHVSQL+ +
Sbjct: 4093 YRQHSAVLRKNQKLSMRYFGPFKVLAKIGDVAYKLEL-PSAARIHPVFHVSQLKPFNGTA 4269
Query: 1380 PDPSHVIPRDDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATGESLTWELE 1439
DP +P ++ + P++I ++ +I + V W + TWE
Sbjct: 4270 QDPYLPLPLTVTEMGPVMQ----PVKILASRIIIRGHNQIEQILVQWENGLQDEATWEDI 4437
Query: 1440 SKMQESYP 1447
++ SYP
Sbjct: 4438 EDIKASYP 4461
>TC234828
Length = 857
Score = 223 bits (569), Expect = 4e-58
Identities = 119/277 (42%), Positives = 167/277 (59%), Gaps = 4/277 (1%)
Frame = +3
Query: 290 RGDIVCFSCGEEGHNGAQCTQPKKVRTGGKVFALTGNQTTNEDRHIRGTCFFNSTPLIAI 349
RG G +N +PK +VFA++G++ D IRG C L +
Sbjct: 54 RGPTNSTRSGNVSNNNISGGRPK---VPSRVFAMSGSEAAASDDLIRGKCLIADKLLDVL 224
Query: 350 IDTGATHCFIVLECAYKLGLIVSDMKGEMVVETPAKGSVTTSLVCLRCPLSMFGRDFEVD 409
D+GATH FI C +LGL +++ +MVV TP VTTS VCL+CP+ + GR F D
Sbjct: 225 YDSGATHSFISHACVERLGLCATELPYDMVVSTPTSEPVTTSRVCLKCPIIVEGRSFMAD 404
Query: 410 LVCLPLLGMDVIFGMNWLEYNRVCINCFNKTVHFSSAEEESGAQFLTTKQLKQ----LER 465
L+CLPL +DVI GM+WL N + ++C K + F G + ++ LK+ E
Sbjct: 405 LICLPLAHLDVILGMDWLSTNHIFLDCKEKMLVF-------GGDVVPSEPLKEDAANEET 563
Query: 466 DGILMFSLMASLSLENQVVIDRLPVVNEFHEVFPDEIPDVPPEREVEFSIDLVPGAKLVS 525
+ + + ++ S+ +E + +PVV+EF EVFPD++ ++PPEREVEF ID+VPGA VS
Sbjct: 564 EDVRTYMVLFSMYVEEDAEVSCIPVVSEFPEVFPDDVCELPPEREVEFIIDVVPGANPVS 743
Query: 526 MAPYHMSASELAELKKQLEDLLDKKFVRPSVSPWGAP 562
+APY MS ELAE+K Q++DLL K+FVRPS SPWGAP
Sbjct: 744 IAPYRMSPVELAEVKAQVQDLLSKQFVRPSASPWGAP 854
>BQ272766 weakly similar to GP|28558781|gb| pol protein {Cucumis melo}, partial
(9%)
Length = 410
Score = 192 bits (489), Expect = 7e-49
Identities = 93/136 (68%), Positives = 112/136 (81%)
Frame = -3
Query: 1300 SYHDKRRKDLEFQEGGHVFLRVTPMTGVGRALKSRKLTPKFIGPYQISERVGTVAYRVGL 1359
SYHDKRRKDLEF+ G HVFLRVTP TGVGRALKS KLTP FIGP+QI ++V VAY++ L
Sbjct: 408 SYHDKRRKDLEFEVGDHVFLRVTP*TGVGRALKS*KLTPHFIGPFQILKKVDFVAYQIAL 229
Query: 1360 PPHLSNLHDVFHVSQLRKYVPDPSHVIPRDDVQVRDNLTVETLPLRIDDRKVKSLRGKEI 1419
PP L++LH+VFHVSQ+ KY+ DPSH++ D VQV++NL ETLPLRI D + K LRGKEI
Sbjct: 228 PPSLTSLHNVFHVSQIHKYINDPSHMVNLDVVQVKENLAHETLPLRIKDMRTKHLRGKEI 49
Query: 1420 PLVRVVWGGATGESLT 1435
LV+V+WGGA+GE T
Sbjct: 48 LLVKVIWGGASGEEAT 1
>BU549069
Length = 615
Score = 191 bits (484), Expect = 3e-48
Identities = 90/132 (68%), Positives = 109/132 (82%)
Frame = -1
Query: 1319 LRVTPMTGVGRALKSRKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKY 1378
L+VTP TGVG+ALKSRKLTP FIG +QI +R VAY++ LPP LSNLH+VFHVSQLR Y
Sbjct: 615 LKVTPRTGVGQALKSRKLTPHFIGHFQILKRAXPVAYQIALPPSLSNLHNVFHVSQLRMY 436
Query: 1379 VPDPSHVIPRDDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATGESLTWEL 1438
+ DPSHV+ DDVQV++NLT ETLPLRI+DR+ K LR KE PLV+V+WGG +GE TWEL
Sbjct: 435 IHDPSHVVKLDDVQVKENLTYETLPLRIEDRRTKHLRRKENPLVKVIWGGTSGEDATWEL 256
Query: 1439 ESKMQESYPELF 1450
ES+M+ +YP LF
Sbjct: 255 ESQMRVAYPSLF 220
>NP395548 reverse transcriptase [Glycine max]
Length = 762
Score = 169 bits (428), Expect = 8e-42
Identities = 96/254 (37%), Positives = 143/254 (55%), Gaps = 19/254 (7%)
Frame = +1
Query: 539 LKKQLEDLLDKKFVRP-SVSPWGAPVLLVKKKDG------------------SMRLCIDY 579
++K++ LL+ + P S S W +PVL+V KK+G S +LCIDY
Sbjct: 1 VRKEVLKLLEVGLIYPISDSAWVSPVLVVSKKEGMTVIRNEKNDLIPTRTVTSWKLCIDY 180
Query: 580 RQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFRTRYGH 639
R+LN+ T K+ +PLP +D ++++L G + +D GY+QI V +D +K AF +G
Sbjct: 181 RKLNEATRKDHFPLPFMDQMLERLAGHAYYCFLDAYFGYNQIVVDPKDQEKMAFTCPFGV 360
Query: 640 YEYKVMPFGVTNAPGVFMEYMNRIFHAFLDKFVVVFIDDILIYSKIEEEHAKHLKIVLQI 699
+ Y+ +PFG+ NAP F M IF ++K + VF+DD ++ E K L++VLQ
Sbjct: 361 FAYRRIPFGLCNAPTTFQMCMLAIFADIVEKSIEVFMDDFSVFVPSLESCLKKLEMVLQR 540
Query: 700 LKERKLYAKLSKCEFWLSEVSFLGHVTSGNGIAVDPSKVDAVSQWETPKSVTEIRSFLGL 759
E L KC F + E LGH S GI VD +K+D + + P +V IRSFLG
Sbjct: 541 CVETNLVLNWEKCHFMVREGIVLGHKISTRGIEVDQTKIDVIEKLPPPSNVKGIRSFLGQ 720
Query: 760 AGYYRRFIEGFSKL 773
A +YRRFI+ F+K+
Sbjct: 721 ARFYRRFIKDFTKV 762
>CF922488
Length = 741
Score = 155 bits (393), Expect = 9e-38
Identities = 85/246 (34%), Positives = 134/246 (53%)
Frame = +3
Query: 566 VKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKD 625
V K+DG + +C+DYR LN + K+++PLP I+ L+D FS +D SGY+QIK+
Sbjct: 3 VLKEDGKV*MCVDYRDLN*ASPKDKFPLPHINVLVDNTTSFSQFSFMDGFSGYNQIKIAP 182
Query: 626 EDMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDKFVVVFIDDILIYSKI 685
EDM+KT F T +G + YK M FG+ N + M +F + K + V++DD+++ S+
Sbjct: 183 EDMEKTTFITLWGTFCYKAMSFGLKNVGATYQRAMVALF*DMMHKEIEVYMDDMIVKSRT 362
Query: 686 EEEHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFLGHVTSGNGIAVDPSKVDAVSQWE 745
EEEH +L+ + + L++ +L +KC F + L + S GI VD +KV + +
Sbjct: 363 EEEHLVNLRKLFRRLRKYRLRLNPAKCMFEVKSRKLLDFIDS*RGIEVDSNKVKVILEMA 542
Query: 746 TPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTYKGKSFVWDAQCESSFNELKQRLT 805
P + +++ FLG Y RFI PL L K + WD C +F +KQ L
Sbjct: 543 KPHTEKQVQGFLGRLNYIVRFIS*LIATCEPLFILLCKNQFVKWDHDC*VAFERIKQCLI 722
Query: 806 TAPILI 811
+L+
Sbjct: 723 NPHVLV 740
>NP395547 reverse transcriptase [Glycine max]
Length = 762
Score = 152 bits (383), Expect = 1e-36
Identities = 90/254 (35%), Positives = 133/254 (51%), Gaps = 19/254 (7%)
Frame = +1
Query: 539 LKKQLEDLLDKKFVRP-SVSPWGAPVLLVKKKDGSM------------------RLCIDY 579
++K++ LL+ + P S S W +PV +V KK G R+CIDY
Sbjct: 1 VRKEVFKLLEAGLIYPISDSSWVSPVQVVPKKGGMTVVKNDRNELIPTRRVTRWRMCIDY 180
Query: 580 RQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFRTRYGH 639
R+LN+ T K+ YPLP +D ++ +L + +D SGY+QI V +D +KTAF +
Sbjct: 181 RKLNEATRKDHYPLPFMDQMLKRLARQSFYRFLDGYSGYNQIAVDPQDQEKTAFTCPFSV 360
Query: 640 YEYKVMPFGVTNAPGVFMEYMNRIFHAFLDKFVVVFIDDILIYSKIEEEHAKHLKIVLQI 699
+ Y+ MPFG+ NA F M IF ++K + VF+DD + +L+ VLQ
Sbjct: 361 FAYRRMPFGLCNASTTFQRCMMAIFDDMVEKCIEVFMDDFSFFGASFGNCLANLEKVLQR 540
Query: 700 LKERKLYAKLSKCEFWLSEVSFLGHVTSGNGIAVDPSKVDAVSQWETPKSVTEIRSFLGL 759
++ L KC F + E LGH S GI V K+D + + P +V I SFLG
Sbjct: 541 CEKSNLVLNWEKCHFMVQEGIVLGHKISKRGIEVVKEKLDVIDKLPPPVNVKGIHSFLGH 720
Query: 760 AGYYRRFIEGFSKL 773
G+YRRFI+ F+K+
Sbjct: 721 VGFYRRFIKDFTKV 762
>TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%)
Length = 589
Score = 142 bits (358), Expect = 1e-33
Identities = 72/163 (44%), Positives = 101/163 (61%)
Frame = +1
Query: 746 TPKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTYKGKSFVWDAQCESSFNELKQRLT 805
T KSV +IRSF GLA +YRRF+ FS +A PL +L K +F W + E +F LK++LT
Sbjct: 100 TLKSVGDIRSFHGLASFYRRFVPNFSTVASPLNELVKKNMAFTWGEKQEQAFALLKEKLT 279
Query: 806 TAPILILPKPEEPFVVYCDASKFGLGGVLMQDGKVVAYASRQLRVHEKNSPTHDLELAAV 865
AP+L LP + F + CDAS G+ VL+Q G +AY S +L N PT+D EL A+
Sbjct: 280 KAPVLALPDFSKTFELECDASGVGVRAVLLQGGHPIAYFSEKLHSATLNYPTYDKELYAL 459
Query: 866 VFVLKIWRHYLYGSRFEVFSDHKSLKYLFDQKELNMRQRRWLE 908
+ + W H+L F + SDH+SLKY+ + +LN R +W+E
Sbjct: 460 IRAPQTWEHFLVCKEFVIHSDHQSLKYIRGKSKLNKRHAKWVE 588
Score = 40.4 bits (93), Expect = 0.006
Identities = 24/76 (31%), Positives = 37/76 (48%)
Frame = +2
Query: 714 FWLSEVSFLGHVTSGNGIAVDPSKVDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKL 773
F + + F G V NG+ +DP K+ A+ +W P V EI LG + + IEG +
Sbjct: 2 FCVDNIFFSGFVVGRNGVQMDPEKIKAIQEWPPP*KVWEI---LGASMG*QASIEGSFLI 172
Query: 774 ALPLTQLTYKGKSFVW 789
+L L L+ +W
Sbjct: 173 SLQLHHLSMSW*RRIW 220
>CO982196
Length = 812
Score = 125 bits (313), Expect = 2e-28
Identities = 67/166 (40%), Positives = 98/166 (58%)
Frame = +1
Query: 1012 GVLRFRGRICIPDNEELKKLILEEGHKSNLSIHLGATKMYQDLKKLFWWSGLKKDVARFV 1071
G L F+ R+ + N L+L+E S L H G + ++ + + +W G+KK +V
Sbjct: 316 GKLYFKDRLVLSKNSTKIPLLLKELQDSPLGGHSGFFRTFKRVANVVFWQGMKKTTRDYV 495
Query: 1072 YACLTCQKSKVEHQRPAGLLTPLDVPEWKWDSISMDFVSSLPNTSRGHDSIWVVVDRLTK 1131
AC C+++K PAGLL L +P W ISMDF+ LP ++G D+I VVVDRLTK
Sbjct: 496 AACEICRRNKTSTLSPAGLL*LLPIPTKVWTDISMDFIGGLPK-AQGKDNILVVVDRLTK 672
Query: 1132 SAHFIPINISYPVAQLAEIYIQNIVKLHGVPSSIVSDRDPRFTSRF 1177
AHF ++ Y ++AE++I+ +V+LHG P+SIVSD F S F
Sbjct: 673 YAHFFALSHPYTAKEVAELFIKELVRLHGFPASIVSDXXRLFMSLF 810
>BI425021
Length = 426
Score = 118 bits (295), Expect = 2e-26
Identities = 59/128 (46%), Positives = 82/128 (63%)
Frame = -1
Query: 1091 LTPLDVPEWKWDSISMDFVSSLPNTSRGHDSIWVVVDRLTKSAHFIPINISYPVAQLAEI 1150
L PL VP+ W+ +SMDF+ LP GH +I+VVV+R +K H + S+ +A +
Sbjct: 426 LCPLPVPQRPWEDLSMDFIVGLP-PYHGHTTIFVVVNRFSKGIHLGTLPTSHTAHMVASL 250
Query: 1151 YIQNIVKLHGVPSSIVSDRDPRFTSRFWRSLQDALGSKLKLSSAYHPQTDGQSERTIQSL 1210
++ ++KLHG P SIVSDRDP F S FW+ L G+ L++SSAYHPQTDGQ+E + +
Sbjct: 249 FLNIVIKLHGFPRSIVSDRDPLFISHFWQDLFRLSGTVLRMSSAYHPQTDGQTEVLNRVI 70
Query: 1211 EDLLRVCV 1218
E LR V
Sbjct: 69 EQYLRAFV 46
>NP334778 reverse transcriptase [Glycine max]
Length = 431
Score = 109 bits (273), Expect = 8e-24
Identities = 55/143 (38%), Positives = 87/143 (60%)
Frame = +3
Query: 574 RLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTAF 633
R+C+DYR LN+ + K+ +PLP ID LM + +FS +D SGY+QIK+ EDM+KT F
Sbjct: 3 RMCVDYRDLNRASPKDNFPLPHIDILMANMASFALFSFMDGFSGYNQIKMAPEDMEKTTF 182
Query: 634 RTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDKFVVVFIDDILIYSKIEEEHAKHL 693
T +G + YKVM FG+ N + M +F + K + ++D+++ S++EEEH +L
Sbjct: 183 ITLWGTFCYKVMSFGLKNFGATYHRAMVALFQDMMHKEIEAYVDEMIAKSRMEEEHLVNL 362
Query: 694 KIVLQILKERKLYAKLSKCEFWL 716
+ + L++ +L KC F L
Sbjct: 363 QNLFGQLRKYRLRLNPRKCVFGL 431
>BE802896
Length = 416
Score = 105 bits (263), Expect = 1e-22
Identities = 60/137 (43%), Positives = 83/137 (59%), Gaps = 4/137 (2%)
Frame = -2
Query: 755 SFLGLAGYYRRFIEGFSKLALPLTQLTYKGKSFVWDAQCESSFNELKQRLTTAPILILPK 814
SFLG AG+YRRFI F K+ALPL+ L K F ++ +C+ +F+ LK+ L T PI+ P
Sbjct: 415 SFLGHAGFYRRFIRDFRKVALPLSNLLQKEVEFDFNDKCK*AFDCLKRALITTPIIQAPD 236
Query: 815 PEEPFVVYCDASKFGLGGVLMQD----GKVVAYASRQLRVHEKNSPTHDLELAAVVFVLK 870
PF + CDAS + LG VL Q +V+ Y+SR L + N T + EL A+VF L+
Sbjct: 235 WTAPFELMCDASNYALGVVLAQKIDKLPRVIYYSSRTLDAAQANYTTTEKELLAIVFALE 56
Query: 871 IWRHYLYGSRFEVFSDH 887
+ YL G+R V+ DH
Sbjct: 55 KFHSYLLGTRIIVYIDH 5
>AW570005
Length = 413
Score = 100 bits (250), Expect = 4e-21
Identities = 54/132 (40%), Positives = 78/132 (58%)
Frame = -2
Query: 747 PKSVTEIRSFLGLAGYYRRFIEGFSKLALPLTQLTYKGKSFVWDAQCESSFNELKQRLTT 806
P++ +R FL L G+YRRFI+G++ +A PL+ L K SFVW + + +F LK +T
Sbjct: 406 PRTARSLRGFLRLTGFYRRFIKGYAAMAAPLSHLLTKD-SFVWSPEADVAFQALKNVVTN 230
Query: 807 APILILPKPEEPFVVYCDASKFGLGGVLMQDGKVVAYASRQLRVHEKNSPTHDLELAAVV 866
+L LP +PF V DAS +G VL Q+G +A+ S++ S T+ ELAA+
Sbjct: 229 TLVLALPDFTKPFTVETDASGSDMGAVLSQEGHPIAFFSKEFCPKLVRSSTYVHELAAIT 50
Query: 867 FVLKIWRHYLYG 878
V+K WR YL G
Sbjct: 49 NVVKKWRQYLLG 14
>BI317507
Length = 359
Score = 97.8 bits (242), Expect = 3e-20
Identities = 52/113 (46%), Positives = 71/113 (62%), Gaps = 1/113 (0%)
Frame = -1
Query: 678 DILIYSKIEEEHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFLGHVTSGNGIAVDPSK 737
+ILIYS + H HL VL +LK+ +L A KC F + + +LGHV S + +A+D +K
Sbjct: 353 NILIYSPDWKSHIMHLTAVLDVLKKERLVANRKKCYFSQTTIEYLGHVISKDCVAMDSNK 174
Query: 738 VDAVSQWETPKSVTEIRSFLGLAGYYRRFIEGFSKLA-LPLTQLTYKGKSFVW 789
V +V +W PK+V + SFL L GYYR+FI+ + KLA PLT LT K F W
Sbjct: 173 VKSVIEWPVPKNVKRVCSFLRLTGYYRKFIKDYGKLAPRPLTDLT-KNDGFKW 18
>BQ273711
Length = 409
Score = 94.7 bits (234), Expect = 3e-19
Identities = 43/103 (41%), Positives = 58/103 (55%)
Frame = -2
Query: 16 VAQAVGQQQAAANGEVRMLETFLRNHPPAFKGRYDPDGAQTWLKEVERIFRVMQCSEVQK 75
V + + Q++ E R L F +NHPP F G YDP+GA+ WL E E+IF M C E K
Sbjct: 309 VLETLVQERDVEPAEYRGLMAFRKNHPPKFSGDYDPEGARLWLAETEKIFEAMGCLEEHK 130
Query: 76 VRFGTHMLAEEADDWWVGLLPVLEQDGAVVTWTVFRREFLNRY 118
V + T ML EA++WW + P G V+ W F+ +FL Y
Sbjct: 129 VLYATFMLQGEAENWWKFVKPSFVAPGGVIPWNAFKDKFLENY 1
>TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
Length = 402
Score = 92.0 bits (227), Expect = 2e-18
Identities = 48/133 (36%), Positives = 76/133 (57%)
Frame = +2
Query: 609 FSKIDLRSGYHQIKVKDEDMQKTAFRTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFL 668
FS +D SGY+QI + ED++KT F T +G + Y+VM FG+ N + M +FH +
Sbjct: 2 FSFMDGFSGYNQI*MAREDVEKTTFVTLWGTFSYRVMAFGLKNTGATYQRAMVALFHDMM 181
Query: 669 DKFVVVFIDDILIYSKIEEEHAKHLKIVLQILKERKLYAKLSKCEFWLSEVSFLGHVTSG 728
K + V++DD++ S+ E EH +L + L++ +L +KC F + LG + S
Sbjct: 182 HKEIEVYVDDMIAKSRTETEHLVNLCKLFGRLQKYQLKLNPTKCTFGVKSGKLLGFIVSQ 361
Query: 729 NGIAVDPSKVDAV 741
GI +DP KV A+
Sbjct: 362 KGIEIDPEKVKAL 400
>BI317638 weakly similar to GP|9294238|dbj| contains similarity to reverse
transcriptase~gene_id:K11J14.5 {Arabidopsis thaliana},
partial (5%)
Length = 420
Score = 84.3 bits (207), Expect(2) = 7e-17
Identities = 45/116 (38%), Positives = 67/116 (56%)
Frame = -2
Query: 1066 DVARFVYACLTCQKSKVEHQRPAGLLTPLDVPEWKWDSISMDFVSSLPNTSRGHDSIWVV 1125
+ A+ + CL CQ +K E +R LL PL VP W+ +S+DF++ L H +I VV
Sbjct: 350 ECAQMLPNCLDCQHTKYETKRIVDLLCPLLVPHRPWEDLSLDFITGLL-PYHVHTAILVV 174
Query: 1126 VDRLTKSAHFIPINISYPVAQLAEIYIQNIVKLHGVPSSIVSDRDPRFTSRFWRSL 1181
VD +K H + S+ +A ++I ++ KLHG+P S+VSD D F S FW+ L
Sbjct: 173 VDHFSKGIHLGMLPSSHTAHTVACLFIDSVAKLHGLPRSLVSDCDLLFVSHFWQEL 6
Score = 22.7 bits (47), Expect(2) = 7e-17
Identities = 9/26 (34%), Positives = 13/26 (49%)
Frame = -1
Query: 1044 HLGATKMYQDLKKLFWWSGLKKDVAR 1069
H G K L K +W G++ DV +
Sbjct: 405 HTGIAKTLA*LSKNIYWFGMRTDVTQ 328
>BQ299538
Length = 426
Score = 55.8 bits (133), Expect(2) = 1e-16
Identities = 30/71 (42%), Positives = 41/71 (57%)
Frame = +3
Query: 1186 GSKLKLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIG 1245
G+ LK+S++YHP DGQ+ LE LR V +Q L E+ YN ++H+S G
Sbjct: 144 GTYLKMSTSYHP*IDGQTVN--HCLETFLRCFVADQPKM*VQWLSWAEYWYNTNFHASTG 317
Query: 1246 MAPFEALYGRK 1256
PFE +YGRK
Sbjct: 318 TTPFEVVYGRK 350
Score = 50.4 bits (119), Expect(2) = 1e-16
Identities = 21/40 (52%), Positives = 28/40 (69%)
Frame = +1
Query: 1142 YPVAQLAEIYIQNIVKLHGVPSSIVSDRDPRFTSRFWRSL 1181
Y LAEI+ + +V LHGVP+S++SD DP F S FW+ L
Sbjct: 13 YSARVLAEIFTKEVVHLHGVPASVLSDEDPIFVSSFWKEL 132
>BM084967
Length = 426
Score = 85.1 bits (209), Expect = 2e-16
Identities = 48/118 (40%), Positives = 66/118 (55%)
Frame = -2
Query: 1011 QGVLRFRGRICIPDNEELKKLILEEGHKSNLSIHLGATKMYQDLKKLFWWSGLKKDVARF 1070
Q ++ G I +P +L E H S H+G TK L + F W G++KDV +F
Sbjct: 356 QDLILKNGCIWLPSGFSFIPTLLLEYHSSPTDAHIGVTKTMARLSENFTWIGIRKDVEQF 177
Query: 1071 VYACLTCQKSKVEHQRPAGLLTPLDVPEWKWDSISMDFVSSLPNTSRGHDSIWVVVDR 1128
V ACL CQ +K E Q+ AGLL PL VP W+ +S +F+ L + RG+ +I VVV R
Sbjct: 176 VAACLDCQYTKYEAQKMAGLLCPLPVPCRPWEDLSFNFIIGL-SEFRGYTAILVVVGR 6
>TC211627
Length = 1034
Score = 84.3 bits (207), Expect = 3e-16
Identities = 64/210 (30%), Positives = 99/210 (46%), Gaps = 2/210 (0%)
Frame = +3
Query: 1239 SYHSSIGMAPFEALYGRKCKTPLCWFESGESVVLGPE-LVHETTEKVKMIREKMKASQSR 1297
S+H S+ +YG K L + +G S V + ++H + +++ Q
Sbjct: 225 SHHLSV-------MYG-KPPPALPLYSAGTSTVEAVDAILHSLATIHHTLTCRLQKYQDS 380
Query: 1298 QKSYHDKRRKDLEFQEGGHVFLRVTPMTGVGRALKSRKLTPKFIGPYQISERVGTVAYRV 1357
K D R+DL F G V++R+ P KL+ +F GPYQI RVG VAYR+
Sbjct: 381 MKRIADSHRRDLTFNIGDWVYVRL*PYRQTSIQSTYTKLSKRFYGPYQIQARVGQVAYRL 560
Query: 1358 GLPPHLSNLHDVFHVSQLR-KYVPDPSHVIPRDDVQVRDNLTVETLPLRIDDRKVKSLRG 1416
LPP S +H +FHVS L+ + P P ++ ++ V+ PL+ D K+
Sbjct: 561 QLPP-TSKIHPIFHVSLLKVHHGPIPPELLALPPFSTTNHPLVQ--PLQFLDWKMDESTT 731
Query: 1417 KEIPLVRVVWGGATGESLTWELESKMQESY 1446
IP V V W E TWE +++++ Y
Sbjct: 732 PPIPQVLVQWTNLAPEDTTWESWTQLKDIY 821
Score = 70.5 bits (171), Expect = 5e-12
Identities = 37/78 (47%), Positives = 44/78 (55%)
Frame = +2
Query: 1173 FTSRFWRSLQDALGSKLKLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGAWDSHLPLI 1232
F S W L G+KL+ S+AYHPQTDGQ+E + LE LR V + W L L
Sbjct: 5 FISGLWHELFHISGTKLRFSTAYHPQTDGQTEVINRILEQYLRAFVHDHPQHWFKFLSLA 184
Query: 1233 EFTYNNSYHSSIGMAPFE 1250
E YN S HS IG +PFE
Sbjct: 185 E*CYNTSVHSGIGFSPFE 238
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.321 0.137 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,880,944
Number of Sequences: 63676
Number of extensions: 933415
Number of successful extensions: 4564
Number of sequences better than 10.0: 101
Number of HSP's better than 10.0 without gapping: 4306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4468
length of query: 1451
length of database: 12,639,632
effective HSP length: 109
effective length of query: 1342
effective length of database: 5,698,948
effective search space: 7647988216
effective search space used: 7647988216
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Medicago: description of AC137666.4