BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137603.5 + phase: 0
(370 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC220590 weakly similar to UP|Q9VB86 (Q9VB86) CG5812-PA (LP07342... 259 1e-69
BF595495 231 4e-61
TC213925 weakly similar to UP|PEXC_HUMAN (O00623) Peroxisome ass... 196 1e-50
TC230046 similar to UP|Q9LU79 (Q9LU79) Gb|AAF21150.1, partial (28%) 32 1e-04
TC234593 similar to UP|Q9LPZ8 (Q9LPZ8) T23J18.3, partial (12%) 30 0.002
BQ094105 homologue to GP|13591696|gb| histone acetyltransferase ... 30 0.002
TC218937 similar to UP|PEXA_ARATH (Q9SYU4) Peroxisome assembly p... 40 0.002
TC229016 similar to UP|HES1_MOUSE (P35428) Transcription factor ... 39 0.005
TC211156 31 0.007
TC234897 weakly similar to UP|TIR3_YEAST (P40552) Cell wall prot... 30 0.009
TC231911 37 0.014
CO982502 37 0.014
TC234931 similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich glyco... 33 0.015
AW568004 weakly similar to GP|20196847|gb| expressed protein {Ar... 37 0.019
TC206053 similar to UP|OM40_ARATH (Q9LHE5) Probable mitochondria... 36 0.024
TC219999 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (5%) 36 0.032
TC232940 homologue to UP|Q7XVJ5 (Q7XVJ5) OJ000126_13.10 protein,... 36 0.032
TC215670 similar to UP|Q9FMU9 (Q9FMU9) Similarity to ATFP3, part... 35 0.054
TC216264 similar to UP|Q9MA01 (Q9MA01) F20B17.20, partial (10%) 35 0.054
TC204084 UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-binding protein, co... 35 0.071
>TC220590 weakly similar to UP|Q9VB86 (Q9VB86) CG5812-PA (LP07342p), partial
(8%)
Length = 558
Score = 259 bits (663), Expect = 1e-69
Identities = 119/139 (85%), Positives = 127/139 (90%)
Frame = +3
Query: 232 ERERLRGPQWIKTLQGALLSCTYTVLDYAQTGLIAAVFFFKMMEWWYQSAEERMSAPTVY 291
ERE LRG QW TLQGA SC YTVLDYAQTGLIAAVFFFKMMEWWYQSAEERMSA TVY
Sbjct: 3 EREXLRGXQWXXTLQGAXXSCXYTVLDYAQTGLIAAVFFFKMMEWWYQSAEERMSAXTVY 182
Query: 292 PPPPPPPPPKVAKEGVQLPSDRTICPLCLQKRVNPSVMTVSGFVFCYACIFKFLTQYKRC 351
PPPPPPPPPKVAKEG+ LP DRTICPLC QKRVNPSV++VSGFVFCYACIFK++TQYKRC
Sbjct: 183 PPPPPPPPPKVAKEGIPLPPDRTICPLCSQKRVNPSVVSVSGFVFCYACIFKYITQYKRC 362
Query: 352 PATMVPATVDQIRRLFHDV 370
P T++P+TVDQIRRLFHDV
Sbjct: 363 PITLMPSTVDQIRRLFHDV 419
>BF595495
Length = 416
Score = 231 bits (589), Expect = 4e-61
Identities = 111/131 (84%), Positives = 119/131 (90%)
Frame = +1
Query: 150 TFNARASVTTLITKRFQKIVGLCYPLLHAGTEGFQFAYQLLYLLDATGYYSLALHALGIH 209
T +A AS++ I R Q+IVG CYP LHA TEG QFAYQLLYLLDATGYYSLALHALGIH
Sbjct: 22 TSDAAASISMRIANRVQRIVGFCYPWLHASTEGLQFAYQLLYLLDATGYYSLALHALGIH 201
Query: 210 VCRATGQELMDASSRISKIRSRERERLRGPQWIKTLQGALLSCTYTVLDYAQTGLIAAVF 269
VCRATGQELMD SSRISK+R+RERERLRGPQW+KTLQGALLSC+YTVLDYAQTGLIAAVF
Sbjct: 202 VCRATGQELMDTSSRISKMRNRERERLRGPQWLKTLQGALLSCSYTVLDYAQTGLIAAVF 381
Query: 270 FFKMMEWWYQS 280
FFKMMEWWYQS
Sbjct: 382 FFKMMEWWYQS 414
>TC213925 weakly similar to UP|PEXC_HUMAN (O00623) Peroxisome assembly
protein 12 (Peroxin-12) (Peroxisome assembly factor-3)
(PAF-3), partial (9%)
Length = 445
Score = 196 bits (499), Expect = 1e-50
Identities = 102/125 (81%), Positives = 116/125 (92%), Gaps = 3/125 (2%)
Frame = +2
Query: 1 MLFQVGGQGSRPTFFEMAAAEQLPRSLRAALTYSIGVLALRTPFLHKLLDYEHESFSLLM 60
MLFQVGGQGSRPTFFEMAAA+QLP SLRAALTYSIGVLALR PFLHKLLD+E ESF+LLM
Sbjct: 71 MLFQVGGQGSRPTFFEMAAAQQLPASLRAALTYSIGVLALRRPFLHKLLDFEDESFALLM 250
Query: 61 LVLEAHSLRTTDASFSESLYGLRRRPANIKLNDND---SSSSSSQLRRRQKLLSLLFLVV 117
LVLE+H+LRTTDASFSESLYGLRRRPANI L ++D +++SSS LRRRQ++LS++FLVV
Sbjct: 251 LVLESHTLRTTDASFSESLYGLRRRPANIALKNDDATTTTTSSSALRRRQRVLSVVFLVV 430
Query: 118 LPYLK 122
LPYLK
Sbjct: 431 LPYLK 445
>TC230046 similar to UP|Q9LU79 (Q9LU79) Gb|AAF21150.1, partial (28%)
Length = 1798
Score = 32.3 bits (72), Expect(2) = 1e-04
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 278 YQSAEERMSAPTVYPPPPPPPPP 300
Y + ++ T PPPPPPPPP
Sbjct: 1125 YDDNADELTNNTTVPPPPPPPPP 1193
Score = 31.2 bits (69), Expect = 0.78
Identities = 10/17 (58%), Positives = 13/17 (75%)
Frame = +3
Query: 292 PPPPPPPPPKVAKEGVQ 308
PPPPPPPPP+ A+ +
Sbjct: 804 PPPPPPPPPESARHNTR 854
Score = 30.4 bits (67), Expect(2) = 1e-04
Identities = 11/21 (52%), Positives = 12/21 (56%)
Frame = +3
Query: 292 PPPPPPPPPKVAKEGVQLPSD 312
PPPPPPPPP K P +
Sbjct: 1266 PPPPPPPPPSKRKSQTPPPPE 1328
Score = 29.6 bits (65), Expect = 2.3
Identities = 14/22 (63%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Frame = +3
Query: 282 EERMSAPTVY---PPPPPPPPP 300
E R S P V PPPPPPPPP
Sbjct: 756 EIRPSPPPVKSTSPPPPPPPPP 821
Score = 28.9 bits (63), Expect = 3.9
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +3
Query: 292 PPPPPPPPP 300
PPPPPPPPP
Sbjct: 801 PPPPPPPPP 827
>TC234593 similar to UP|Q9LPZ8 (Q9LPZ8) T23J18.3, partial (12%)
Length = 532
Score = 30.0 bits (66), Expect = 1.7
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +2
Query: 287 APTVYPPPPPPPPP 300
A T PPPPPPPPP
Sbjct: 134 AITTPPPPPPPPPP 175
Score = 29.6 bits (65), Expect(2) = 0.002
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 292 PPPPPPPPPKVAKEGVQLPSDRTICP 317
PPPPPPPPP A + + T P
Sbjct: 152 PPPPPPPPPAHAAKSAWPSTSPTRAP 229
Score = 29.3 bits (64), Expect = 3.0
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +2
Query: 292 PPPPPPPPPKVA 303
PPPPPPPPP A
Sbjct: 146 PPPPPPPPPPPA 181
Score = 29.3 bits (64), Expect(2) = 0.002
Identities = 13/29 (44%), Positives = 14/29 (47%), Gaps = 5/29 (17%)
Frame = +2
Query: 277 WYQSAEERMSAPTVYPP-----PPPPPPP 300
W + R S T PP PPPPPPP
Sbjct: 80 WIPTRSSRRSKSTTPPPRAITTPPPPPPP 166
>BQ094105 homologue to GP|13591696|gb| histone acetyltransferase GCN5
{Arabidopsis thaliana}, partial (12%)
Length = 341
Score = 30.4 bits (67), Expect(2) = 0.002
Identities = 14/30 (46%), Positives = 16/30 (52%), Gaps = 4/30 (13%)
Frame = +1
Query: 292 PPPPPPPPPKVAKEG----VQLPSDRTICP 317
PPPPPPPPP + +LPS R P
Sbjct: 154 PPPPPPPPPSTSASSRLRTTRLPSLRPPSP 243
Score = 28.5 bits (62), Expect(2) = 0.002
Identities = 12/28 (42%), Positives = 16/28 (56%), Gaps = 4/28 (14%)
Frame = +1
Query: 277 WYQSAEE----RMSAPTVYPPPPPPPPP 300
W +AE+ +P + P PPPPPPP
Sbjct: 91 WSPTAEDPSVPAAPSPLLPPTPPPPPPP 174
>TC218937 similar to UP|PEXA_ARATH (Q9SYU4) Peroxisome assembly protein 10
(Peroxin-10) (AthPEX10) (Pex10p) (PER8), partial (73%)
Length = 1217
Score = 39.7 bits (91), Expect = 0.002
Identities = 18/53 (33%), Positives = 27/53 (49%)
Frame = +1
Query: 316 CPLCLQKRVNPSVMTVSGFVFCYACIFKFLTQYKRCPATMVPATVDQIRRLFH 368
C LCL R +P+ T G VFC+ CI ++ + CP P T + ++H
Sbjct: 958 CTLCLSNRQHPTA-TSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCVYH 1113
>TC229016 similar to UP|HES1_MOUSE (P35428) Transcription factor HES-1 (Hairy
and enhancer of split 1), partial (6%)
Length = 769
Score = 38.5 bits (88), Expect = 0.005
Identities = 22/74 (29%), Positives = 33/74 (43%)
Frame = +1
Query: 294 PPPPPPPKVAKEGVQLPSDRTICPLCLQKRVNPSVMTVSGFVFCYACIFKFLTQYKRCPA 353
P PP P+ KE V CP+C+ V + T G +FC CI ++ +CP
Sbjct: 367 PEPPKEPEAPKEPV------FNCPICMSPLVE-EMSTRCGHIFCKNCIRAAISAQAKCPT 525
Query: 354 TMVPATVDQIRRLF 367
T + + R+F
Sbjct: 526 CRKKVTKNSLIRVF 567
>TC211156
Length = 649
Score = 31.2 bits (69), Expect = 0.78
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1
Query: 289 TVYPPPPPPPPP 300
T+ PPPPPPPPP
Sbjct: 274 TITPPPPPPPPP 309
Score = 28.9 bits (63), Expect(2) = 0.007
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +1
Query: 278 YQSAEERMSAPTVYPPPPPPPPP 300
Y A P PPPPPPPP
Sbjct: 238 YAPAGPSYQPPRTITPPPPPPPP 306
Score = 28.1 bits (61), Expect(2) = 0.007
Identities = 12/26 (46%), Positives = 13/26 (49%)
Frame = +1
Query: 292 PPPPPPPPPKVAKEGVQLPSDRTICP 317
PPPPPPPP V PS + P
Sbjct: 286 PPPPPPPPSNVNYAPNFFPSSGGMAP 363
>TC234897 weakly similar to UP|TIR3_YEAST (P40552) Cell wall protein TIR3
precursor, partial (12%)
Length = 698
Score = 30.4 bits (67), Expect(2) = 0.009
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 281 AEERMSAPTVYPPPPPPPPP 300
A + S P+ PPPPPPPP
Sbjct: 22 ASSKCSEPSSASPPPPPPPP 81
Score = 26.2 bits (56), Expect(2) = 0.009
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +1
Query: 294 PPPPPPPKVAKEGVQLPS 311
PPPPPPP + PS
Sbjct: 58 PPPPPPPPSRRPSTSAPS 111
>TC231911
Length = 672
Score = 37.0 bits (84), Expect = 0.014
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 9/50 (18%)
Frame = +1
Query: 316 CPLCLQKRVNPSVMTVSGFVFCYACIFKFL---------TQYKRCPATMV 356
CP+CL+ + P + T G +FC+ CI ++L +KRCP V
Sbjct: 280 CPICLEYPMCPQI-TTCGHIFCFPCILQYLLMGEEDHKGDSWKRCPLCFV 426
>CO982502
Length = 677
Score = 37.0 bits (84), Expect = 0.014
Identities = 17/53 (32%), Positives = 26/53 (48%)
Frame = -1
Query: 316 CPLCLQKRVNPSVMTVSGFVFCYACIFKFLTQYKRCPATMVPATVDQIRRLFH 368
C LCL +P+ T G VFC+ CI ++ + CP P T + ++H
Sbjct: 236 CTLCLSNPQHPTA-TSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCVYH 81
>TC234931 similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich glycoprotein
DZ-HRGP precursor, partial (9%)
Length = 485
Score = 32.7 bits (73), Expect(2) = 0.015
Identities = 11/16 (68%), Positives = 14/16 (86%)
Frame = +3
Query: 285 MSAPTVYPPPPPPPPP 300
+S+P + PPPPPPPPP
Sbjct: 252 VSSPPLPPPPPPPPPP 299
Score = 28.9 bits (63), Expect = 3.9
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +3
Query: 292 PPPPPPPPP 300
PPPPPPPPP
Sbjct: 441 PPPPPPPPP 467
Score = 28.9 bits (63), Expect = 3.9
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +3
Query: 292 PPPPPPPPP 300
PPPPPPPPP
Sbjct: 444 PPPPPPPPP 470
Score = 27.7 bits (60), Expect = 8.6
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +3
Query: 292 PPPPPPPPPKV 302
PPPPPPPP K+
Sbjct: 447 PPPPPPPPHKM 479
Score = 23.1 bits (48), Expect(2) = 0.015
Identities = 8/22 (36%), Positives = 11/22 (49%)
Frame = +2
Query: 295 PPPPPPKVAKEGVQLPSDRTIC 316
PPPPPP+ A + + C
Sbjct: 419 PPPPPPQTASAAATTTTAQDEC 484
>AW568004 weakly similar to GP|20196847|gb| expressed protein {Arabidopsis
thaliana}, partial (17%)
Length = 436
Score = 36.6 bits (83), Expect = 0.019
Identities = 14/23 (60%), Positives = 16/23 (68%)
Frame = +2
Query: 285 MSAPTVYPPPPPPPPPKVAKEGV 307
+S+PT PPPPPPPPP E V
Sbjct: 41 LSSPTTSPPPPPPPPPPPPSEQV 109
Score = 28.5 bits (62), Expect = 5.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 286 SAPTVYPPPPPPPPPKVAKEG 306
S P PPPPPPP +V +G
Sbjct: 59 SPPPPPPPPPPPPSEQVLPDG 121
>TC206053 similar to UP|OM40_ARATH (Q9LHE5) Probable mitochondrial import
receptor subunit TOM40 homolog (Translocase of outer
membrane 40 kDa subunit homolog), partial (25%)
Length = 568
Score = 36.2 bits (82), Expect = 0.024
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 286 SAPTVYPPPPPPPPPKVAKEGVQLPSDRTICPLCLQKRVNPSVMTVSGFVF 336
S T+ PPPPPPPPP A ++ CP+ ++ ++M++ +F
Sbjct: 176 SMATLIPPPPPPPPPPAAAADPKVDYLNLPCPIPFEELHREAMMSLKPDLF 328
>TC219999 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (5%)
Length = 641
Score = 35.8 bits (81), Expect = 0.032
Identities = 15/32 (46%), Positives = 18/32 (55%)
Frame = -3
Query: 286 SAPTVYPPPPPPPPPKVAKEGVQLPSDRTICP 317
S+P+ YPPPPPPPPP + P CP
Sbjct: 255 SSPS-YPPPPPPPPPHPSPPPSSTPPPTATCP 163
>TC232940 homologue to UP|Q7XVJ5 (Q7XVJ5) OJ000126_13.10 protein, partial
(13%)
Length = 796
Score = 35.8 bits (81), Expect = 0.032
Identities = 14/23 (60%), Positives = 15/23 (64%)
Frame = +1
Query: 286 SAPTVYPPPPPPPPPKVAKEGVQ 308
SAPT PPPPPPPPP K +
Sbjct: 136 SAPTPSPPPPPPPPPPPPKNSTK 204
>TC215670 similar to UP|Q9FMU9 (Q9FMU9) Similarity to ATFP3, partial (34%)
Length = 809
Score = 35.0 bits (79), Expect = 0.054
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 279 QSAEERMSAPTVYPPPPPPPPPKV 302
+S EE +A PPPPPPPPP++
Sbjct: 218 ESKEEVAAAAAAPPPPPPPPPPEI 289
Score = 34.7 bits (78), Expect = 0.071
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 279 QSAEERMSAPTVYPPPPPPPPP 300
Q ++E ++A PPPPPPPPP
Sbjct: 215 QESKEEVAAAAAAPPPPPPPPP 280
>TC216264 similar to UP|Q9MA01 (Q9MA01) F20B17.20, partial (10%)
Length = 1332
Score = 35.0 bits (79), Expect = 0.054
Identities = 20/48 (41%), Positives = 24/48 (49%), Gaps = 7/48 (14%)
Frame = -3
Query: 280 SAEERMSAPTV--YPPPPPPPPPKVAKEGVQLPSD-----RTICPLCL 320
SA ++PT PPPPPPPPP A + PS + PLCL
Sbjct: 403 SARSSSTSPTTPPSPPPPPPPPPPTAILFLSKPSQPWSLLSLLLPLCL 260
>TC204084 UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-binding protein, complete
Length = 1937
Score = 34.7 bits (78), Expect = 0.071
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -3
Query: 288 PTVYPPPPPPPPPKVAKEGVQLPSDRTICPLCLQKRVNPSVMTVSGFVFC 337
P +YPPPPPPPPP ++ L C P + ++ F+ C
Sbjct: 1527 PRLYPPPPPPPPPPPPRD*ASLTVILRPSKFC------PFIAPIASFMDC 1396
Score = 28.9 bits (63), Expect = 3.9
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3
Query: 291 YPPPPPPPP 299
YPPPPPPPP
Sbjct: 1578 YPPPPPPPP 1552
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.324 0.137 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,451,232
Number of Sequences: 63676
Number of extensions: 345229
Number of successful extensions: 19493
Number of sequences better than 10.0: 440
Number of HSP's better than 10.0 without gapping: 6316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12608
length of query: 370
length of database: 12,639,632
effective HSP length: 99
effective length of query: 271
effective length of database: 6,335,708
effective search space: 1716976868
effective search space used: 1716976868
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Medicago: description of AC137603.5