BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137602.16 - phase: 0 /partial
(167 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC212083 similar to UP|Q71BZ1 (Q71BZ1) Type-B response regulator... 125 1e-29
BM086086 100 6e-22
BE660997 similar to PIR|T51247|T512 ARR2 protein [imported] - Ar... 77 4e-15
BG789991 homologue to GP|14189890|dbj response regulator 9 {Zea ... 75 2e-14
TC204188 similar to UP|Q94F45 (Q94F45) AT4g18020/T6K21_200, part... 66 9e-12
CA853100 weakly similar to PIR|C96700|C967 protein F12A21.15 [im... 65 1e-11
TC205663 similar to UP|Q6PT61 (Q6PT61) Induced protein MgI1, par... 65 2e-11
TC216611 62 1e-10
BI941774 similar to GP|9759308|dbj contains similarity to transf... 60 4e-10
TC219596 similar to UP|Q9ZQT9 (Q9ZQT9) WERBP-1 protein, partial ... 60 4e-10
BU764154 60 6e-10
TC205387 similar to UP|Q84QT1 (Q84QT1) Transfactor-like, partial... 59 8e-10
TC205383 similar to UP|Q84QT1 (Q84QT1) Transfactor-like, partial... 59 1e-09
TC205662 similar to GB|AAP21233.1|30102630|BT006425 At3g46640 {A... 59 1e-09
TC216610 57 4e-09
TC232826 similar to UP|Q9ZQT9 (Q9ZQT9) WERBP-1 protein, partial ... 57 4e-09
TC219749 homologue to UP|Q6H510 (Q6H510) Myb family transcriptio... 56 9e-09
AW396912 similar to GP|15810171|gb| AT3g16857/MUH15_1 {Arabidops... 56 9e-09
TC219750 similar to UP|Q9SAK5 (Q9SAK5) T8K14.15 protein, partial... 55 2e-08
TC210225 similar to GB|AAK59989.1|14345995|AY030192 KANADI prote... 54 3e-08
>TC212083 similar to UP|Q71BZ1 (Q71BZ1) Type-B response regulator, partial
(35%)
Length = 708
Score = 125 bits (313), Expect = 1e-29
Identities = 71/165 (43%), Positives = 105/165 (63%), Gaps = 6/165 (3%)
Frame = +1
Query: 1 LVFLKNDDLK-LVMKAIDVGACDYLLKPVQLKEVKMIWQHVIRKKKTSKRSNDDVPNSDS 59
++ + DD K +VMK + GACDYL+KPV+++ +K IWQHV+RK+K + + +++
Sbjct: 97 VIMMSADDGKSVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDAEQSGSAEE 276
Query: 60 GN----GIDSAVTKSSDNKIE-KPSRKRKDGNEDDVEEENEYDHENDGPTMPKKPRFKWS 114
G+ D A SS N+ + S+KR+D EE E + +D T+ KKPR WS
Sbjct: 277 GDRQPKASDEADYSSSANEGSWRNSKKRRD-------EEEEAEDRDDTSTL-KKPRVVWS 432
Query: 115 RDLHHKFVVAVNQFGVEKARPKKILNLMNIENLTKEHVASHLQVF 159
+LH +FV AV+Q G++KA PKKIL LMN+ LT+E+VASHL +
Sbjct: 433 VELHQQFVAAVDQLGIDKAVPKKILELMNVPGLTRENVASHLHKY 567
>BM086086
Length = 428
Score = 99.8 bits (247), Expect = 6e-22
Identities = 48/79 (60%), Positives = 62/79 (77%)
Frame = +3
Query: 81 KRKDGNEDDVEEENEYDHENDGPTMPKKPRFKWSRDLHHKFVVAVNQFGVEKARPKKILN 140
KRKD +ED+ +E+ E D +N+ P+ KKPR WS DLH KFV AVNQ G++KA PKKIL+
Sbjct: 3 KRKDQDEDE-DEDQENDLDNEDPSAQKKPRVVWSVDLHRKFVAAVNQLGIDKAVPKKILD 179
Query: 141 LMNIENLTKEHVASHLQVF 159
LMN+E LT+E+VASHLQ +
Sbjct: 180 LMNVEKLTRENVASHLQKY 236
>BE660997 similar to PIR|T51247|T512 ARR2 protein [imported] - Arabidopsis
thaliana, partial (14%)
Length = 476
Score = 77.0 bits (188), Expect = 4e-15
Identities = 37/65 (56%), Positives = 49/65 (74%)
Frame = +1
Query: 95 EYDHENDGPTMPKKPRFKWSRDLHHKFVVAVNQFGVEKARPKKILNLMNIENLTKEHVAS 154
E D ++D T+ KKPR WS +LH +F+ AVNQ G++KA PKKIL LMN+ LT+E+VAS
Sbjct: 1 EGDEKDDSSTL-KKPRVVWSVELHQQFMAAVNQLGIDKAVPKKILELMNVPGLTRENVAS 177
Query: 155 HLQVF 159
HLQ +
Sbjct: 178 HLQKY 192
>BG789991 homologue to GP|14189890|dbj response regulator 9 {Zea mays},
partial (9%)
Length = 454
Score = 74.7 bits (182), Expect = 2e-14
Identities = 35/53 (66%), Positives = 43/53 (81%)
Frame = +1
Query: 107 KKPRFKWSRDLHHKFVVAVNQFGVEKARPKKILNLMNIENLTKEHVASHLQVF 159
KK R WS +LH KFV AVNQ G++KA PKKIL+LMN+E LT+E+VASHLQ +
Sbjct: 1 KKARVVWSVELHRKFVAAVNQLGLDKAVPKKILDLMNVEGLTRENVASHLQKY 159
>TC204188 similar to UP|Q94F45 (Q94F45) AT4g18020/T6K21_200, partial (18%)
Length = 1483
Score = 65.9 bits (159), Expect = 9e-12
Identities = 43/118 (36%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Frame = +3
Query: 45 KTSKRSNDDVPNSDSGNGIDSAVTKSSDNKIEKPSRKRKDGNEDDVEEENEYDHENDGPT 104
KT R DD N G +SAV+ + P K+ N D N+ ND
Sbjct: 414 KTLIREEDDFANVSKG---ESAVSLN-------PHNKKFLSNADGNTSPNKTGVLNDSCE 563
Query: 105 MP---KKPRFKWSRDLHHKFVVAVNQFGVEKARPKKILNLMNIENLTKEHVASHLQVF 159
+ KK + W+ +LH KFV AV Q G+++A P +IL +M +E LT+ +VASHLQ +
Sbjct: 564 IKANRKKVKVDWTPELHKKFVKAVEQLGIDQAIPSRILEIMKVEGLTRHNVASHLQKY 737
>CA853100 weakly similar to PIR|C96700|C967 protein F12A21.15 [imported] -
Arabidopsis thaliana, partial (10%)
Length = 588
Score = 65.5 bits (158), Expect = 1e-11
Identities = 45/124 (36%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
Frame = +1
Query: 37 WQHVIRKKKTSKRSNDDVPNSDSGNGIDSAVTKSSDNKIEKPSRKRKDGNEDDVEEENEY 96
W HV RK ND N +D + DN K V+ E
Sbjct: 13 WVHVARKAW-----ND--------NKVDIKCGRLEDNDKRKREENDSKATRGGVKRGREP 153
Query: 97 DHENDGPTMPKKPRFKWSRDLHHKFVVAVNQFG-VEKARPKKILNLMNIENLTKEHVASH 155
N G T K+ R W+ +LH+KF+ AV+Q G + A PK+IL LMN+ LT+E VASH
Sbjct: 154 KRVNAG-TSSKRQRIVWTDELHNKFLDAVSQLGDINTAVPKRILELMNVPGLTREQVASH 330
Query: 156 LQVF 159
LQ +
Sbjct: 331 LQKY 342
>TC205663 similar to UP|Q6PT61 (Q6PT61) Induced protein MgI1, partial (60%)
Length = 1519
Score = 65.1 bits (157), Expect = 2e-11
Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Frame = +1
Query: 47 SKRSNDDVPNSDSGNGIDSAVTKSSDNKIEKP-SRKRKD-----GNEDDVEEENEYDHEN 100
S +N+ + D G++ D P SRK++ E D + E E
Sbjct: 394 SSSNNNHNYDGDGDGGVEEEEDDDDDRDGSGPDSRKQRKIDCGAAEEADSAVQTETSAER 573
Query: 101 DGPTMPKKPRFKWSRDLHHKFVVAVNQFGVEKARPKKILNLMNIENLTKEHVASHLQVF 159
T K+PR W+ LH +FV V G++ A PK I+ LMN+E LT+E+VASHLQ +
Sbjct: 574 ---TAVKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKY 741
>TC216611
Length = 634
Score = 62.4 bits (150), Expect = 1e-10
Identities = 28/75 (37%), Positives = 44/75 (58%)
Frame = +1
Query: 85 GNEDDVEEENEYDHENDGPTMPKKPRFKWSRDLHHKFVVAVNQFGVEKARPKKILNLMNI 144
G + + N+ P +K + W+ +LH +FV AV Q GV+KA P +IL +M I
Sbjct: 25 GRKSSSAQSKNNSSSNNNPQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGI 204
Query: 145 ENLTKEHVASHLQVF 159
+ LT+ ++ASHLQ +
Sbjct: 205 DCLTRHNIASHLQKY 249
>BI941774 similar to GP|9759308|dbj contains similarity to
transfactor~gene_id:MPH15.16 {Arabidopsis thaliana},
partial (32%)
Length = 416
Score = 60.5 bits (145), Expect = 4e-10
Identities = 29/61 (47%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Frame = +1
Query: 100 NDGPTMPKKPRFKWSRDLHHKFVVAVNQFG-VEKARPKKILNLMNIENLTKEHVASHLQV 158
++G + K R +W++DLH KFV VN+ G E+A PK IL +MN + LT HV SHLQ
Sbjct: 4 SNGAIVSSKTRIRWTKDLHEKFVECVNRLGGAEQATPKAILKMMNTDGLTIFHVKSHLQK 183
Query: 159 F 159
+
Sbjct: 184 Y 186
>TC219596 similar to UP|Q9ZQT9 (Q9ZQT9) WERBP-1 protein, partial (45%)
Length = 1233
Score = 60.5 bits (145), Expect = 4e-10
Identities = 29/55 (52%), Positives = 37/55 (66%), Gaps = 1/55 (1%)
Frame = +1
Query: 106 PKKPRFKWSRDLHHKFVVAVNQF-GVEKARPKKILNLMNIENLTKEHVASHLQVF 159
P KPR +W+ +LH FV AVNQ G E+A PK +L LM ++ LT HV SHLQ +
Sbjct: 127 PAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVDGLTIYHVKSHLQKY 291
>BU764154
Length = 449
Score = 59.7 bits (143), Expect = 6e-10
Identities = 26/53 (49%), Positives = 38/53 (71%)
Frame = +3
Query: 107 KKPRFKWSRDLHHKFVVAVNQFGVEKARPKKILNLMNIENLTKEHVASHLQVF 159
K+PR W+ LH +FV AV G++ A PK I+ LM+++ LT+E+VASHLQ +
Sbjct: 141 KRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKY 299
>TC205387 similar to UP|Q84QT1 (Q84QT1) Transfactor-like, partial (46%)
Length = 736
Score = 59.3 bits (142), Expect = 8e-10
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Frame = +2
Query: 87 EDDVEEENEYDHENDGP---TMPKKPRFKWSRDLHHKFVVAVNQFG-VEKARPKKILNLM 142
++D++ + + H D T KPR +W+ DLH +FV AV Q G KA PK I+ M
Sbjct: 209 QEDMQGGSNHAHLGDPCLVLTSDPKPRLRWTADLHERFVDAVTQLGGASKATPKAIMRTM 388
Query: 143 NIENLTKEHVASHLQVF 159
N++ LT H+ SHLQ +
Sbjct: 389 NVKGLTLYHLKSHLQKY 439
>TC205383 similar to UP|Q84QT1 (Q84QT1) Transfactor-like, partial (51%)
Length = 1563
Score = 58.9 bits (141), Expect = 1e-09
Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Frame = +2
Query: 104 TMPKKPRFKWSRDLHHKFVVAVNQF-GVEKARPKKILNLMNIENLTKEHVASHLQVF 159
T KPR +W++DLH +FV AV Q G KA PK I+ MN++ LT H+ SHLQ +
Sbjct: 452 TADPKPRLRWTQDLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKY 622
>TC205662 similar to GB|AAP21233.1|30102630|BT006425 At3g46640 {Arabidopsis
thaliana;} , partial (26%)
Length = 1003
Score = 58.5 bits (140), Expect = 1e-09
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 10/86 (11%)
Frame = +1
Query: 84 DGNEDDVEEENEYDHENDGP----------TMPKKPRFKWSRDLHHKFVVAVNQFGVEKA 133
DG+ +D E+ ++ D ++ T K+ + W+ LH +FV V G++ A
Sbjct: 196 DGDVNDKEDNDDTDCKDSRSDSRTETSAKRTTVKRLQLVWTLQLHKRFVDVVAHLGIKNA 375
Query: 134 RPKKILNLMNIENLTKEHVASHLQVF 159
PK I+ LMN+E LT+E+VASHLQ +
Sbjct: 376 VPKTIMQLMNVEGLTRENVASHLQKY 453
>TC216610
Length = 1167
Score = 57.0 bits (136), Expect = 4e-09
Identities = 25/52 (48%), Positives = 37/52 (71%)
Frame = +1
Query: 108 KPRFKWSRDLHHKFVVAVNQFGVEKARPKKILNLMNIENLTKEHVASHLQVF 159
K + W+ +LH +FV AV Q GV+KA P +IL +M I+ LT+ ++ASHLQ +
Sbjct: 1 KVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKY 156
>TC232826 similar to UP|Q9ZQT9 (Q9ZQT9) WERBP-1 protein, partial (16%)
Length = 520
Score = 57.0 bits (136), Expect = 4e-09
Identities = 40/118 (33%), Positives = 61/118 (50%), Gaps = 15/118 (12%)
Frame = +1
Query: 50 SNDDVPNSDSGNGIDSAVTKSSDNKIEKPSRKRKDGNEDDVEEENEYDHE---------- 99
++D+V SD G +D + S D+ + P+ + +++ E + + H
Sbjct: 172 NDDNVKRSDFGEWVDQLM--SIDDSLH-PNWSQLLADDNVAEPKPKASHVPQQQHIASVE 342
Query: 100 ---NDGPTMPK-KPRFKWSRDLHHKFVVAVNQF-GVEKARPKKILNLMNIENLTKEHV 152
N T P+ KPR +W+ +LH FV AVNQ G +KA PK +LNLM +E LT HV
Sbjct: 343 VVGNSASTAPQTKPRMRWTPELHEAFVEAVNQLGGSDKATPKGVLNLMKVEGLTIYHV 516
>TC219749 homologue to UP|Q6H510 (Q6H510) Myb family transcription
factor-like, partial (29%)
Length = 759
Score = 55.8 bits (133), Expect = 9e-09
Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Frame = +1
Query: 104 TMPKKPRFKWSRDLHHKFVVAVNQF-GVEKARPKKILNLMNIENLTKEHVASHLQVF 159
T KPR +W+ +LH +FV AV Q G +KA PK I+ +M ++ LT H+ SHLQ F
Sbjct: 238 TTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 408
>AW396912 similar to GP|15810171|gb| AT3g16857/MUH15_1 {Arabidopsis
thaliana}, partial (14%)
Length = 408
Score = 55.8 bits (133), Expect = 9e-09
Identities = 23/56 (41%), Positives = 38/56 (67%)
Frame = +3
Query: 6 NDDLKLVMKAIDVGACDYLLKPVQLKEVKMIWQHVIRKKKTSKRSNDDVPNSDSGN 61
+D ++VMK + GACDYL+KPV+++ +K IWQHV+R +K R + + + G+
Sbjct: 198 DDGKQVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRMRKNGLRDVEQSGSMEEGD 365
>TC219750 similar to UP|Q9SAK5 (Q9SAK5) T8K14.15 protein, partial (29%)
Length = 390
Score = 55.1 bits (131), Expect = 2e-08
Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Frame = +2
Query: 104 TMPKKPRFKWSRDLHHKFVVAVNQF-GVEKARPKKILNLMNIENLTKEHVASHLQVF 159
T KPR +W+ +LH +FV AV Q G +KA PK I+ +M ++ LT H+ SHLQ F
Sbjct: 107 TTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 277
>TC210225 similar to GB|AAK59989.1|14345995|AY030192 KANADI protein
{Arabidopsis thaliana;} , partial (19%)
Length = 857
Score = 54.3 bits (129), Expect = 3e-08
Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Frame = +1
Query: 107 KKPRFKWSRDLHHKFVVAVNQFGV-EKARPKKILNLMNIENLTKEHVASHLQVF 159
+ PR +W+ LH FV AV G E+A PK +L LMN+++LT HV SHLQ++
Sbjct: 154 RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMY 315
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.315 0.134 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,873,472
Number of Sequences: 63676
Number of extensions: 81756
Number of successful extensions: 647
Number of sequences better than 10.0: 124
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of query: 167
length of database: 12,639,632
effective HSP length: 90
effective length of query: 77
effective length of database: 6,908,792
effective search space: 531976984
effective search space used: 531976984
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Medicago: description of AC137602.16