TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137553.4 - phase: 0 /pseudo
         (921 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NP595172 polyprotein [Glycine max]                                     56  8e-08
TC234828                                                               46  9e-05
BU549069                                                               41  0.003
NP395548 reverse transcriptase [Glycine max]                           37  0.052
BQ272766 weakly similar to GP|28558781|gb| pol protein {Cucumis ...    31  2.2
AW278964 weakly similar to SP|O82702|VAG1 Vacuolar ATP synthase ...    30  6.3
CF922488                                                               25  9.1

>NP595172 polyprotein [Glycine max]
          Length = 4659

 Score = 55.8 bits (133), Expect = 8e-08
 Identities = 23/54 (42%), Positives = 38/54 (69%)
 Frame = +1

Query: 8    ELKKQLEDLVEMKFFRPSVSPWGAPVLLVKKKDGSMRLRIDYRQLNKVTIKNRY 61
            +++K +++++     +PS SP+  P+LLVKKKDGS R   DYR LN +T+K+ +
Sbjct: 1834 QIEKMIQEMLVQGIIQPSNSPFSLPILLVKKKDGSWRFCTDYRALNAITVKDSF 1995


>TC234828 
          Length = 857

 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 20/32 (62%), Positives = 25/32 (77%)
 Frame = +3

Query: 1   MSVSELAELKKQLEDLVEMKFFRPSVSPWGAP 32
           MS  ELAE+K Q++DL+  +F RPS SPWGAP
Sbjct: 759 MSPVELAEVKAQVQDLLSKQFVRPSASPWGAP 854


>BU549069 
          Length = 615

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 23/66 (34%), Positives = 38/66 (56%)
 Frame = -3

Query: 790 ESHSCD*CWTCFEVKEVDSEIYWSVSDIGKSWNGGVSSWITTASFEFARYITCVATSKVC 849
           ESHS D  W+  E+ +  + +Y S  +  KS + G+ + IT  +F  ++ ++CV+T  V 
Sbjct: 613 ESHSKDWGWSSTEIPKTHTSLYRSFPNS*KSXSCGIPNCITPITF*SSQCLSCVSTPYVY 434

Query: 850 TGSISC 855
             SISC
Sbjct: 433 P*SISC 416


>NP395548 reverse transcriptase [Glycine max]
          Length = 762

 Score = 36.6 bits (83), Expect = 0.052
 Identities = 25/74 (33%), Positives = 39/74 (51%), Gaps = 19/74 (25%)
 Frame = +1

Query: 9  LKKQLEDLVEMKFFRP-SVSPWGAPVLLVKKKDG------------------SMRLRIDY 49
          ++K++  L+E+    P S S W +PVL+V KK+G                  S +L IDY
Sbjct: 1  VRKEVLKLLEVGLIYPISDSAWVSPVLVVSKKEGMTVIRNEKNDLIPTRTVTSWKLCIDY 180

Query: 50 RQLNKVTIKNRYLL 63
          R+LN+ T K+ + L
Sbjct: 181RKLNEATRKDHFPL 222


>BQ272766 weakly similar to GP|28558781|gb| pol protein {Cucumis melo},
           partial (9%)
          Length = 410

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = -2

Query: 788 VFESHSCD*CWTCFEVKEVDSEIYWSVSDIGKSWNGGVSSWITTASFEFARYITC 842
           + +SH  D  W+ FE+ +  +  Y S  +  KS   G+S+ IT  S+  ++ ++C
Sbjct: 355 ILKSHPIDWGWSSFEILKTHTSFYRSFPNSQKS*FCGISNCITPISY*PSQCLSC 191


>AW278964 weakly similar to SP|O82702|VAG1 Vacuolar ATP synthase subunit G 1
           (EC 3.6.3.14) (V-ATPase G subunit 1), complete
          Length = 328

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
 Frame = -2

Query: 788 VFESHSCD*CWTCFEVKEVDSEIYWSVSDIGKSWNGGVSS------WITTASFEFARYIT 841
           +F S SC  C+T      V  + ++ +S    +W   +SS      W   A F F    T
Sbjct: 246 IFSSVSCSSCFT*APESPVMCDPFF*ISASSSAWY*AISSSACSWAWFNIAYFSFFAAFT 67

Query: 842 CVATSKVCTGSISC 855
               S  C+ +ISC
Sbjct: 66  IRCAS--CSAAISC 31


>CF922488 
          Length = 741

 Score = 25.4 bits (54), Expect(2) = 9.1
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 36 VKKKDGSMRLRIDYRQLNKVTIKNRYLLRELMI 68
          V K+DG + + +DYR LN  + K+++ L  + +
Sbjct: 3  VLKEDGKV*MCVDYRDLN*ASPKDKFPLPHINV 101



 Score = 21.9 bits (45), Expect(2) = 9.1
 Identities = 14/31 (45%), Positives = 18/31 (57%)
 Frame = +1

Query: 86  KVITRLK*KMKICRRQLSERGMVTMNIMLCR 116
           +VITR +*  +I +RQLS        I LCR
Sbjct: 154 QVITR*R*HQRIWKRQLSLLYGEPSAIRLCR 246


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.366    0.163    0.618 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,294,269
Number of Sequences: 63676
Number of extensions: 544499
Number of successful extensions: 7223
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2776
Number of HSP's successfully gapped in prelim test: 214
Number of HSP's that attempted gapping in prelim test: 4355
Number of HSP's gapped (non-prelim): 3192
length of query: 921
length of database: 12,639,632
effective HSP length: 106
effective length of query: 815
effective length of database: 5,889,976
effective search space: 4800330440
effective search space used: 4800330440
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 63 (28.9 bits)